1 files changed, 116 insertions, 0 deletions
diff --git a/setup.py b/setup.py
new file mode 100644
index 0000000..b5b01a6
--- /dev/null
+++ b/setup.py
@@ -0,0 +1,116 @@
+""" setup.py
+
+to compile cython files:
+python setup.py build_ext --inplace
+
+
+Copyright 2014-2017, Mario Mulansky <mario.mulansky@gmx.net>
+
+Distributed under the BSD License
+
+"""
+from setuptools import setup, find_packages
+from distutils.extension import Extension
+import os.path
+
+try:
+    from Cython.Distutils import build_ext
+except ImportError:
+    use_cython = False
+else:
+    use_cython = True
+
+
+class numpy_include(object):
+    """Defers import of numpy until install_requires is through"""
+    def __str__(self):
+        import numpy
+        return numpy.get_include()
+
+
+if os.path.isfile("pyspike/cython/cython_add.c") and \
+   os.path.isfile("pyspike/cython/cython_profiles.c") and \
+   os.path.isfile("pyspike/cython/cython_distances.c") and \
+   os.path.isfile("pyspike/cython/cython_directionality.c") and \
+   os.path.isfile("pyspike/cython/cython_simulated_annealing.c"):
+    use_c = True
+else:
+    use_c = False
+
+cmdclass = {}
+ext_modules = []
+
+if use_cython:  # Cython is available, compile .pyx -> .c
+    ext_modules += [
+        Extension("pyspike.cython.cython_add",
+                  ["pyspike/cython/cython_add.pyx"]),
+        Extension("pyspike.cython.cython_profiles",
+                  ["pyspike/cython/cython_profiles.pyx"]),
+        Extension("pyspike.cython.cython_distances",
+                  ["pyspike/cython/cython_distances.pyx"]),
+        Extension("pyspike.cython.cython_directionality",
+                  ["pyspike/cython/cython_directionality.pyx"]),
+        Extension("pyspike.cython.cython_simulated_annealing",
+                  ["pyspike/cython/cython_simulated_annealing.pyx"])
+    ]
+    cmdclass.update({'build_ext': build_ext})
+elif use_c:  # c files are there, compile to binaries
+    ext_modules += [
+        Extension("pyspike.cython.cython_add",
+                  ["pyspike/cython/cython_add.c"]),
+        Extension("pyspike.cython.cython_profiles",
+                  ["pyspike/cython/cython_profiles.c"]),
+        Extension("pyspike.cython.cython_distances",
+                  ["pyspike/cython/cython_distances.c"]),
+        Extension("pyspike.cython.cython_directionality",
+                  ["pyspike/cython/cython_directionality.c"]),
+        Extension("pyspike.cython.cython_simulated_annealing",
+                  ["pyspike/cython/cython_simulated_annealing.c"])
+    ]
+# neither cython nor c files available -> automatic fall-back to python backend
+
+setup(
+    name='pyspike',
+    packages=find_packages(exclude=['doc']),
+    version='0.6.0',
+    cmdclass=cmdclass,
+    ext_modules=ext_modules,
+    include_dirs=[numpy_include()],
+    description='A Python library for the numerical analysis of spike\
+train similarity',
+    author='Mario Mulansky',
+    author_email='mario.mulansky@gmx.net',
+    license='BSD',
+    url='https://github.com/mariomulansky/PySpike',
+    install_requires=['numpy'],
+    keywords=['data analysis', 'spike', 'neuroscience'],  # arbitrary keywords
+    classifiers=[
+        # How mature is this project? Common values are
+        #   3 - Alpha
+        #   4 - Beta
+        #   5 - Production/Stable
+        'Development Status :: 4 - Beta',
+
+        # Indicate who your project is intended for
+        'Intended Audience :: Science/Research',
+        'Topic :: Scientific/Engineering',
+        'Topic :: Scientific/Engineering :: Information Analysis',
+
+        'License :: OSI Approved :: BSD License',
+
+        'Programming Language :: Python :: 2',
+        'Programming Language :: Python :: 2.7',
+        'Programming Language :: Python :: 3',
+        'Programming Language :: Python :: 3.3',
+        'Programming Language :: Python :: 3.4',
+        'Programming Language :: Python :: 3.5',
+        'Programming Language :: Python :: 3.6'
+    ],
+    package_data={
+        'pyspike': ['cython/cython_add.c', 'cython/cython_profiles.c',
+                    'cython/cython_distances.c',
+                    'cython/cython_directionality.c',
+                    'cython/cython_simulated_annealing.c'],
+        'test': ['Spike_testdata.txt']
+    }
+)