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2018-09-20Spike Order support (#39)0.6.0Mario Mulansky
* reorganized directionality module * further refactoring of directionality * completed python directionality backend * added SPIKE-Sync based filtering new function filter_by_spike_sync removes spikes that have a multi-variate Spike Sync value below some threshold not yet fully tested, python backend missing. * spike sync filtering, cython sim ann Added function for filtering out events based on a threshold for the spike sync values. Usefull for focusing on synchronous events during directionality analysis. Also added cython version of simulated annealing for performance. * added coincidence single profile to python backend missing function in python backend added, identified and fixed a bug in the implementation as well * updated test case to new spike sync behavior * python3 fixes * another python3 fix * reorganized directionality module * further refactoring of directionality * completed python directionality backend * added SPIKE-Sync based filtering new function filter_by_spike_sync removes spikes that have a multi-variate Spike Sync value below some threshold not yet fully tested, python backend missing. * spike sync filtering, cython sim ann Added function for filtering out events based on a threshold for the spike sync values. Usefull for focusing on synchronous events during directionality analysis. Also added cython version of simulated annealing for performance. * added coincidence single profile to python backend missing function in python backend added, identified and fixed a bug in the implementation as well * updated test case to new spike sync behavior * python3 fixes * another python3 fix * Fix absolute imports in directionality measures * remove commented code * Add directionality to docs, bump version * Clean up directionality module, add doxy. * Remove debug print from tests * Fix bug in calling Python backend * Fix incorrect integrals in PieceWiseConstFunc (#36) * Add (some currently failing) tests for PieceWiseConstFunc.integral * Fix implementation of PieceWiseConstFunc.integral Just by adding a special condition for when we are only taking an integral "between" two edges of a PieceWiseConstFunc All tests now pass. Fixes #33. * Add PieceWiseConstFunc.integral tests for ValueError * Add testing bounds of integral * Raise ValueError in function implementation * Fix incorrect integrals in PieceWiseLinFunc (#38) Integrals of piece-wise linear functions were incorrect if the requested interval lies completely between two support points. This has been fixed, and a unit test exercising this behavior was added. Fixes #38 * Add Spike Order example and Tutorial section Adds an example computing spike order profile and the optimal spike train order. Also adds a section on spike train order to the tutorial.
2016-10-30fixed typoMario Mulansky
2016-10-30updated referencesMario Mulansky
2016-10-27Added SoftwareX reference and Spike-Order noteMario Mulansky
2016-03-09deprecated old multivariate functionsMario Mulansky
with the new interface, the previous functions for computing multivariate profiles and distances are obsolete. This is now noted in the docs.
2015-05-18Merge branch 'master' into developMario Mulansky
Conflicts: setup.py
2015-05-11+tutorial, reference, contributors orderMario Mulansky
2015-05-04removed class reference from ReadmeMario Mulansky
2015-05-04restructured docsMario Mulansky
moved tutorial from Readme to separate section. Readme now contains only two basic examples
2015-05-04added pypi badgeMario Mulansky
2015-04-27updated docsMario Mulansky
2015-04-21updated contributorsMario Mulansky
2015-03-22typosMario Mulansky
2015-02-03update docs to the structural changesMario Mulansky
2015-01-20added spike sync desc to docsMario Mulansky
2014-11-04packaging info to distribute on PyPI0.1.2Mario Mulansky
2014-11-04change "sort" parameter to "is_sorted"Mario Mulansky
2014-10-24links to SPIKY and paper pdfsMario Mulansky
2014-10-24added contributions noteMario Mulansky
2014-10-24Thomas' feedbackMario Mulansky
2014-10-23note in docs about multiple averaging intervalsMario Mulansky
2014-10-23+averaging example, removed empty averaging sec from docsMario Mulansky
2014-10-23docs: added interval averaging explanationsMario Mulansky
2014-10-21doc: distance matrix, improved exampleMario Mulansky
2014-10-20fixed typoMario Mulansky
2014-10-20+multivariate example, docs for spike profileMario Mulansky
2014-10-20fix rst errorMario Mulansky
2014-10-20changed readme from markdown to rstMario Mulansky
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