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2018-09-20Spike Order support (#39)0.6.0Mario Mulansky
* reorganized directionality module * further refactoring of directionality * completed python directionality backend * added SPIKE-Sync based filtering new function filter_by_spike_sync removes spikes that have a multi-variate Spike Sync value below some threshold not yet fully tested, python backend missing. * spike sync filtering, cython sim ann Added function for filtering out events based on a threshold for the spike sync values. Usefull for focusing on synchronous events during directionality analysis. Also added cython version of simulated annealing for performance. * added coincidence single profile to python backend missing function in python backend added, identified and fixed a bug in the implementation as well * updated test case to new spike sync behavior * python3 fixes * another python3 fix * reorganized directionality module * further refactoring of directionality * completed python directionality backend * added SPIKE-Sync based filtering new function filter_by_spike_sync removes spikes that have a multi-variate Spike Sync value below some threshold not yet fully tested, python backend missing. * spike sync filtering, cython sim ann Added function for filtering out events based on a threshold for the spike sync values. Usefull for focusing on synchronous events during directionality analysis. Also added cython version of simulated annealing for performance. * added coincidence single profile to python backend missing function in python backend added, identified and fixed a bug in the implementation as well * updated test case to new spike sync behavior * python3 fixes * another python3 fix * Fix absolute imports in directionality measures * remove commented code * Add directionality to docs, bump version * Clean up directionality module, add doxy. * Remove debug print from tests * Fix bug in calling Python backend * Fix incorrect integrals in PieceWiseConstFunc (#36) * Add (some currently failing) tests for PieceWiseConstFunc.integral * Fix implementation of PieceWiseConstFunc.integral Just by adding a special condition for when we are only taking an integral "between" two edges of a PieceWiseConstFunc All tests now pass. Fixes #33. * Add PieceWiseConstFunc.integral tests for ValueError * Add testing bounds of integral * Raise ValueError in function implementation * Fix incorrect integrals in PieceWiseLinFunc (#38) Integrals of piece-wise linear functions were incorrect if the requested interval lies completely between two support points. This has been fixed, and a unit test exercising this behavior was added. Fixes #38 * Add Spike Order example and Tutorial section Adds an example computing spike order profile and the optimal spike train order. Also adds a section on spike train order to the tutorial.
2017-10-04Version bumpMario Mulansky
2017-10-04Fix library status stringMario Mulansky
2017-10-04Fix typo in emailMario Mulansky
2017-10-04defer numpy import to allow install_requires to do its job (fixes #24)Dan Meliza
2017-10-04Bump versionMario Mulansky
2016-03-09new version: 0.5.1Mario Mulansky
2015-12-14removed directionality from __init__ and setup.pyMario Mulansky
2015-12-14update version strings and Changelog0.4.0Mario Mulansky
2015-12-14stop using package_dataIgor Gnatenko
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com>
2015-12-14add metadata and testing under py3Igor Gnatenko
Signed-off-by: Igor Gnatenko <i.gnatenko.brain@gmail.com>
2015-08-12new spike delay asymmetry measuresMario Mulansky
added first version of spike delay asymmetry functions. still incomplete and untested.
2015-05-18set version 0.3Mario Mulansky
2015-05-08introduce backend for distance functionMario Mulansky
isi- and spike distances over complete intervals are now computed without obtaining the profile first. This gives more than x2 performance improvements.
2015-05-08renamed cython_distance module -> cython_profilesMario Mulansky
2015-02-03moved cython functions to subdirectoryMario Mulansky
2014-11-04v0.1.3Mario Mulansky
2014-11-04fixed setup for travis test runs0.1.3Mario Mulansky
2014-11-04packaging info to distribute on PyPI0.1.2Mario Mulansky
2014-10-16catch ImportError in setup.pyMario Mulansky
2014-10-16travis fixMario Mulansky
2014-10-14more isi docsMario Mulansky
2014-10-14more docsMario Mulansky
2014-10-01switched from pyximport to distutilsMario Mulansky
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