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# PySpike
PySpike is a Python library for numerical analysis of spike train similarity.
Its core functionality is the implementation of the bivariate [ISI and SPIKE distance](http://www.scholarpedia.org/article/Measures_of_spike_train_synchrony).
Additionally, it allows to compute multi-variate spike train distances, averaging and general spike train processing.
All source codes are published under the liberal [MIT License](http://opensource.org/licenses/MIT).
## Requirements and Installation
To use PySpike you need Python installed with the following additional packages:
- numpy
- scipy
- matplotlib
- cython
In particular, make sure that [cython](http://www.cython.org) is configured properly and able to locate a C compiler.
To install PySpike, simply download the source, i.e. via git, and run the setup.py script:
git clone ...
cd PySpike
python setup.py build_ext --inplace
## Loading spike trains
## Computing bi-variate distances
## Computing multi-variate distances
## Plotting
## Averaging
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