removed benchmark files

23 files changed, 0 insertions, 827 deletions

diff --git a/benchmarks/Dockerfile b/benchmarks/Dockerfile
deleted file mode 100644
index e349648..0000000
--- a/benchmarks/Dockerfile
+++ /dev/null
@@ -1,321 +0,0 @@
-# FROM ubuntu:latest
-
-#FROM ubuntu:18.10 as benchmark-setup
-# RUN echo "deb http://archive.ubuntu.com/ubuntu/ cosmic main restricted universe" > /etc/apt/sources.list
-
-FROM ubuntu:19.04 as benchmark-setup
-
-RUN apt-get update && \
-    apt-get install -y \
-    apt-utils \
-    cmake \
-    curl \
-    g++ \
-    git \
-    gudhi-utils \
-    hdf5-tools \
-    libcgal-dev \
-    libboost-dev \
-    libboost-filesystem-dev \
-    libboost-test-dev \
-    libgmp3-dev \
-    libmpfr-dev \
-    libtbb-dev \
-    libopenmpi-dev \
-    make \
-    python-minimal \
-    python-pip \
-    time \
-    unzip \
- && rm -rf /var/lib/apt/lists/*
-
-WORKDIR /external
-
-RUN curl -LO https://julialang-s3.julialang.org/bin/linux/x64/1.1/julia-1.1.0-linux-x86_64.tar.gz \
-	&& tar xf julia-1.1.0-linux-x86_64.tar.gz
-ENV PATH="${PATH}:/external/julia-1.1.0/bin"
-
-RUN julia --eval 'using Pkg; Pkg.add("Plotly"); Pkg.add("Eirene");  using Eirene;'
-
-
-WORKDIR /benchmark
-COPY sphere_3_192_points.dat .
-COPY sphere_3_192.complex .
-COPY o3_1024.txt .
-COPY o3_1024_1.8.dipha .
-COPY o3_4096.txt .
-# COPY o3_4096_1.4.dipha .
-COPY clifford_torus_50000.points.txt .
-# COPY dragon_2000.dipha .
-
-
-
-RUN curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_distmat/fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt \
-&& curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_distmat/dipha/fractal_9_5_2_random.bin \
-\
-&& curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_point_cloud/dragon_vrip.ply.txt_2000_.txt \
-\
-# && curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_distmat/human_gene_distmat.txt \
-\
-&& curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_point_cloud/random_point_cloud_50_16_.txt \
-&& curl -LO https://github.com/n-otter/PH-roadmap/raw/master/data_sets/roadmap_datasets_distmat/dipha/random_50_16.bin
-
-RUN (echo "OFF\n2000 0 0" && cat dragon_vrip.ply.txt_2000_.txt) >dragon_vrip.ply.txt_2000_.off \
-&& (echo "OFF\n50 0 0" && cat random_point_cloud_50_16_.txt) >random_point_cloud_50_16_.off \
-&& (echo "OFF\n1024 0 0" && cat sphere_3_192_points.dat) > sphere_3_192.off \
-&& (echo "OFF\n1024 0 0" && cat o3_1024.txt) >o3_1024.off \
-&& (echo "OFF\n4096 0 0" && cat o3_4096.txt) >o3_4096.off \
-&& (echo "nOFF\n4 50000 0 0" && cat clifford_torus_50000.points.txt) >clifford_torus_50000.points.off
-
-
-FROM benchmark-setup as benchmark-ripser
-
-WORKDIR /ripser
-RUN git clone https://github.com/Ripser/ripser.git \
-&& cd ripser \
-&& git checkout dev \
-&& make
-
-ENV PATH="${PATH}:/ripser/ripser"
-
-WORKDIR /benchmark
-RUN time -v -o sphere_3_192.ripser.txt    ripser sphere_3_192_points.dat --format point-cloud --dim 2
-RUN time -v -o o3_1024.ripser.txt    ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2
-RUN time -v -o o3_4096.ripser.txt    ripser o3_4096.txt --format point-cloud --dim 3 --threshold 1.4 --ratio 2
-RUN time -v -o clifford_torus_50000.ripser.txt    ripser clifford_torus_50000.points.txt --format point-cloud --dim 2 --threshold .15 --ratio 2
-
-RUN time -v -o random.ripser.txt    ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7
-RUN time -v -o fractal-r.ripser.txt    ripser fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt --dim 2
-RUN time -v -o dragon-2.ripser.txt    ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1
-# RUN time -v -o genome.ripser.txt    ripser human_gene_distmat.txt --dim 1
-
-
-FROM benchmark-ripser as benchmark-ripser-no-emergent
-
-WORKDIR /ripser/ripser
-RUN git pull && git checkout benchmarks/disable-emergent-pairs \
-&& make
-
-WORKDIR /benchmark
-RUN time -v -o sphere_3_192.ripser-no-emergent.txt    ripser sphere_3_192_points.dat --format point-cloud --dim 2
-RUN time -v -o random.ripser-no-emergent.txt    ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7
-RUN time -v -o fractal-r.ripser-no-emergent.txt    ripser fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt --dim 2
-RUN time -v -o dragon-2.ripser-no-emergent.txt    ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1
-# RUN time -v -o genome.ripser-no-emergent.txt    ripser human_gene_distmat.txt --dim 1
-RUN time -v -o o3_1024.ripser-no-emergent.txt    ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2
-RUN time -v -o o3_4096.ripser-no-emergent.txt    ripser o3_4096.txt --format point-cloud --dim 3 --threshold 1.4 --ratio 2
-RUN time -v -o clifford_torus_50000.ripser-no-emergent.txt    ripser clifford_torus_50000.points.txt --format point-cloud --dim 2 --threshold .15 --ratio 2
-
-
-FROM benchmark-ripser as benchmark-ripser-store-reduced
-
-WORKDIR /ripser/ripser
-RUN git pull && git checkout benchmarks/store-reduced-matrix \
-&& make
-
-WORKDIR /benchmark
-RUN time -v -o sphere_3_192.ripser-store-reduced.txt    ripser sphere_3_192_points.dat --format point-cloud --dim 2
-RUN time -v -o random.ripser-store-reduced.txt    ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7
-# RUN time -v -o fractal-r.ripser-store-reduced.txt    ripser fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt --dim 2
-# RUN time -v -o dragon-2.ripser-store-reduced.txt    ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1
-# RUN time -v -o genome.ripser-store-reduced.txt    ripser human_gene_distmat.txt --dim 1
-RUN time -v -o o3_1024.ripser-store-reduced.txt    ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2
-# RUN time -v -o o3_4096.ripser-store-reduced.txt    ripser o3_4096.txt --format point-cloud --dim 3 --threshold 1.4 --ratio 2
-# RUN time -v -o clifford_torus_50000.ripser-store-reduced.txt    ripser clifford_torus_50000.points.txt --format point-cloud --dim 2 --threshold .15 --ratio 2
-
-
-FROM benchmark-ripser as benchmark-ripser-use-reduced
-
-WORKDIR /ripser/ripser
-RUN git pull && git checkout benchmarks/use-reduced-matrix \
-&& make
-
-WORKDIR /benchmark
-RUN time -v -o sphere_3_192.ripser-use-reduced.txt    ripser sphere_3_192_points.dat --format point-cloud --dim 2
-RUN time -v -o random.ripser-use-reduced.txt    ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7
-# RUN time -v -o fractal-r.ripser-use-reduced.txt    ripser fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt --dim 2
-# RUN time -v -o dragon-2.ripser-use-reduced.txt    ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1
-# RUN time -v -o genome.ripser-use-reduced.txt    ripser human_gene_distmat.txt --dim 1
-RUN time -v -o o3_1024.ripser-use-reduced.txt    ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2
-# RUN time -v -o o3_4096.ripser-use-reduced.txt    ripser o3_4096.txt --format point-cloud --dim 3 --threshold 1.4 --ratio 2
-# RUN time -v -o clifford_torus_50000.ripser-use-reduced.txt    ripser clifford_torus_50000.points.txt --format point-cloud --dim 2 --threshold .15 --ratio 2
-
-
-FROM benchmark-setup as benchmark-gudhi
-
-# WORKDIR /gudhi
-# 
-# RUN curl -LO "https://gforge.inria.fr/frs/download.php/file/37696/2018-09-04-14-25-00_GUDHI_2.3.0.tar.gz" \
-# && tar xf 2018-09-04-14-25-00_GUDHI_2.3.0.tar.gz \
-# && cd 2018-09-04-14-25-00_GUDHI_2.3.0 \
-# && mkdir build \
-# && cd build \
-# && cmake -DCMAKE_BUILD_TYPE="Release" .. \
-# && make rips_distance_matrix_persistence 
-# 
-# ENV PATH="${PATH}:/gudhi/2018-09-04-14-25-00_GUDHI_2.3.0/build/utilities/Rips_complex"
-#
-# WORKDIR /benchmark
-# RUN time -v -o sphere_3_192.gudhi.txt     rips_distance_matrix_persistence -d3 -p2 sphere_3_192.distance_matrix
-
-WORKDIR /benchmark
-RUN time -v -o sphere_3_192.gudhi.txt     gudhi-rips-persistence -d3 -p2 sphere_3_192.off >sphere_3_192.gudhi.out.txt
-# RUN time -v -o fractal-r.gudhi.txt     gudhi-rips-distance-matrix-persistence -d3 -p2 fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt >fractal-r.gudhi.out.txt
-RUN time -v -o o3_1024.gudhi.txt     gudhi-rips-persistence -d4 -p2 -r 1.8 o3_1024.off >o3_1024.gudhi.out.txt
-RUN time -v -o o3_4096.gudhi.txt     gudhi-rips-persistence -d4 -p2 -r 1.4 o3_4096.off >o3_4096.gudhi.out.txt
-RUN time -v -o clifford_torus_50000.gudhi.txt     gudhi-rips-persistence -d3 -p2 -r 0.15 clifford_torus_50000.points.off >clifford_torus_50000.gudhi.out.txt
-
-
-FROM benchmark-setup as benchmark-dipha
-
-WORKDIR /dipha
-
-RUN git clone https://github.com/DIPHA/dipha.git \
-&& cd dipha \
-&& mkdir build \
-&& cd build \
-&& cmake .. \
-&& make
-
-ENV PATH="${PATH}:/dipha/dipha/build"
-
-WORKDIR /benchmark
-RUN time -v -o sphere_3_192.dipha.txt     dipha --dual --benchmark --upper_dim 3 sphere_3_192.complex sphere_3_192.dipha.diagram
-RUN time -v -o o3_1024.dipha.txt     dipha --dual --benchmark --upper_dim 4 o3_1024_1.8.dipha o3_1024_1.8.dipha.diagram
-# RUN time -v -o o3_4096.dipha.txt     dipha --dual --benchmark --upper_dim 4 o3_4096_1.4.dipha o3_4096_1.4.dipha.diagram
-# RUN time -v -o dragon-2.dipha.txt     dipha --dual --benchmark --upper_dim 2 dragon_2000.dipha dragon_2000.dipha.diagram
-
-
-
-# FROM benchmark-dipha as benchmark-dipha-multicore
-
-RUN time -v -o sphere_3_192.dipha-multicore.txt     mpiexec --allow-run-as-root --mca btl_vader_single_copy_mechanism none \
-dipha --dual --benchmark --upper_dim 3 sphere_3_192.complex sphere_3_192.dipha-multicore.diagram
-
-RUN time -v -o o3_1024.dipha-multicore.txt     mpiexec --allow-run-as-root --mca btl_vader_single_copy_mechanism none \
-dipha --dual --benchmark --upper_dim 4 o3_1024_1.8.dipha o3_1024_1.8.dipha-multicore.diagram
-
-
-### FROM benchmark-setup as benchmark-eirene037
-### 
-### WORKDIR /eirene
-### 
-### RUN curl -LO https://julialang-s3.julialang.org/bin/linux/x64/0.6/julia-0.6.4-linux-x86_64.tar.gz \
-### && tar xf julia-0.6.4-linux-x86_64.tar.gz
-### 
-### RUN curl -LO "http://gregoryhenselman.org/eirene/ewExternalFiles/Eirene0_3_7.zip" \
-### && unzip Eirene0_3_7.zip \
-### && cd Eirene0_3_7
-### 
-### # ENV PATH="${PATH}:/eirene/julia-9d11f62bcb/bin"
-### 
-### # RUN julia --eval 'Pkg.clone("https://github.com/Eetion/Eirene.jl.git"); using Eirene'
-### # RUN julia --eval ' \
-### #	Pkg.clone("https://github.com/bnels/PlotlyJS.jl.git"); \
-### #	Pkg.checkout("PlotlyJS","fix-jsstring"); \
-### #	Pkg.add("Eirene");'
-### RUN /eirene/julia-9d11f62bcb/bin/julia --eval ' \
-### 	Pkg.clone("https://github.com/bnels/PlotlyJS.jl.git"); \
-### 	Pkg.checkout("PlotlyJS","fix-jsstring");'
-### RUN /eirene/julia-9d11f62bcb/bin/julia --eval 'Pkg.add("Distances"); Pkg.add("JLD"); Pkg.add("Blink"); Pkg.add("Plotly"); Pkg.add("MultivariateStats");'
-### RUN /eirene/julia-9d11f62bcb/bin/julia --load /eirene/Eirene0_3_7/Eirene0_3_7_mutable.jl --eval 'eirene([0 1; 1 0]);'
-### 
-### WORKDIR /benchmark
-### RUN time -v -o sphere_3_192.eirene037.txt \
-###     /eirene/julia-9d11f62bcb/bin/julia --load /eirene/Eirene0_3_7/Eirene0_3_7_mutable.jl --eval 'eirene([0 1; 1 0]); p = readdlm("sphere_3_192.distance_matrix"); \
-###     tic(); eirene(p, record="none", bettimax=2); toc();' >sphere_3_192.eirene037.out.txt
-### 
-### RUN time -v -o dragon-2.eirene037.txt \
-###     /eirene/julia-9d11f62bcb/bin/julia --load /eirene/Eirene0_3_7/Eirene0_3_7_mutable.jl --eval 'eirene([0 1; 1 0]); p = readdlm("dragon_vrip.ply.txt_2000_.txt"); \
-###     tic(); eirene(p, rowsare="points", record="none", bettimax=1); toc();' >dragon-2.eirene037.out.txt
-### RUN time -v -o fractal-r.eirene037.txt \
-###     /eirene/julia-9d11f62bcb/bin/julia --load /eirene/Eirene0_3_7/Eirene0_3_7_mutable.jl --eval 'eirene([0 1; 1 0]); p = readdlm("fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt"); \
-###     tic(); eirene(p, record="none", bettimax=2); toc();' >fractal-r.eirene037.out.txt
-### RUN time -v -o random.eirene037.txt  \
-###     /eirene/julia-9d11f62bcb/bin/julia --load /eirene/Eirene0_3_7/Eirene0_3_7_mutable.jl --eval 'eirene([0 1; 1 0]); p = readdlm("random_point_cloud_50_16_.txt"); \
-###     tic(); eirene(p, rowsare="points", record="none", bettimax=7); toc();' >random.eirene037.out.txt
-
-
-
-FROM benchmark-setup as benchmark-eirene
-
-WORKDIR /eirene
-
-#RUN curl -LO https://julialang-s3.julialang.org/bin/linux/x64/1.1/julia-1.1.0-linux-x86_64.tar.gz \
-#&& tar xf julia-1.1.0-linux-x86_64.tar.gz
-#ENV PATH="${PATH}:/eirene/julia-1.1.0/bin"
-
-#RUN julia --eval 'using Pkg; Pkg.add("Plotly"); Pkg.add("Eirene"); using Eirene'
-
-WORKDIR /benchmark
-
-RUN time -v -o sphere_3_192.eirene.txt \
-	julia --eval 'maxdim = 2; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = transpose(readdlm("sphere_3_192_points.dat")); result = eirene(d, model="pc", record="none", maxdim=maxdim))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' >sphere_3_192.eirene.out.txt
-
-RUN time -v -o o3_1024.eirene.txt \
-	julia --eval 'maxdim = 3; maxrad = 1.8; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = transpose(readdlm("o3_1024.txt")); result = eirene(d, model="pc", record="none", maxdim=maxdim, maxrad=maxrad))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' > o3_1024.eirene.out.txt
-
-RUN time -v -o o3_4096.eirene.txt \
-	julia --eval 'maxdim = 3; maxrad = 1.4; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = transpose(readdlm("o3_4096.txt")); result = eirene(d, model="pc", record="none", maxdim=maxdim, maxrad=maxrad))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' > o3_4096.eirene.out.txt
-
-# RUN time -v -o clifford_torus_50000.points.eirene.txt \
-#	julia --eval 'maxdim = 2; maxrad = .15; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = transpose(readdlm("clifford_torus_50000.points.txt")); result = eirene(d, model="pc", record="none", maxdim=maxdim, maxrad=maxrad))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' > clifford_torus_50000.eirene.out.txt
-
-RUN time -v -o dragon-2.eirene.txt \
-	julia --eval 'maxdim = 1; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = transpose(readdlm("dragon_vrip.ply.txt_2000_.txt")); result = eirene(d, model="pc", record="none", maxdim=maxdim))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' >dragon-2.eirene.out.txt
-
-RUN time -v -o fractal-r.eirene.txt \
-	julia --eval 'maxdim = 2; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = (m->(m+transpose(m))/2)(readdlm("fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt")); result = eirene(d, record="none", maxdim=maxdim))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' >fractal-r.eirene.out.txt
-
-RUN time -v -o random.eirene.txt  \
-	julia --eval 'maxdim = 7; maxrad = 1.7753855751520569; using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed (d = transpose(readdlm("random_point_cloud_50_16_.txt")); result = eirene(d, model="pc", record="none", maxdim=maxdim, maxrad=maxrad))); for i in 0:maxdim print("dim $(i): "); show(stdout, "text/plain", (barcode(result , dim = i))); println(); end' >random.eirene.out.txt
-
-#
-# using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed result=eirene(transpose(readdlm("/Users/uli/Bitbucket/ripser/examples/o3_1024.txt")), model="pc", record="none", maxdim=3, maxrad=1.8))
-# using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed result=eirene(transpose(readdlm("/Users/uli/Bitbucket/ripser/examples/o3_2048.txt")), model="pc", record="none", maxdim=3, maxrad=1.6))
-# using Eirene; using DelimitedFiles; eirene([0 1; 1 0]); println(@elapsed result=eirene(transpose(readdlm("/Users/uli/Bitbucket/ripser/examples/o3_4096.txt")), model="pc", record="none", maxdim=3, maxrad=1.4))
-#
-
-FROM benchmark-setup as benchmark-dionysus2
-
-WORKDIR /dionysus2
-
-RUN pip install numpy scipy dionysus
-
-# RUN git clone https://github.com/mrzv/dionysus.git \
-# && cd dionysus \
-# && mkdir build \
-# && cd build \
-# && cmake .. \
-# && make rips-pairwise
-# 
-# ENV PATH="${PATH}:/dionysus2/dionysus/build/examples/rips"
-
-WORKDIR /benchmark
-# RUN time -v -o sphere_3_192.dionysus-cpp.txt  rips-pairwise sphere_3_192_points.dat -s3
-
-#RUN time -v -o sphere.dionysus-py.txt python -c 'import dionysus as d; from numpy import loadtxt, inf; import math; from scipy.spatial.distance import squareform; \
-#	d.cohomology_persistence(d.fill_rips(squareform(loadtxt("sphere_3_192.distance_matrix")), 3, inf));'
-
-#RUN time -v -o dragon-2.dionysus-py.txt python -c 'import dionysus as d; from numpy import loadtxt, inf; import math; from scipy.spatial.distance import squareform; \
-#	d.cohomology_persistence(d.fill_rips(loadtxt("dragon_vrip.ply.txt_2000_.txt"), 2, inf));'
-
-#RUN time -v -o fractal.dionysus-py.txt python -c 'import dionysus as d; from numpy import loadtxt, inf; import math; from scipy.spatial.distance import squareform; \
-#	d.cohomology_persistence(d.fill_rips(squareform(loadtxt("fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt")), 3, inf));'
-
-
-FROM benchmark-setup as benchmark-output
-
-COPY --from=benchmark-ripser /benchmark /benchmark
-COPY --from=benchmark-gudhi /benchmark /benchmark
-COPY --from=benchmark-dipha /benchmark /benchmark
-COPY --from=benchmark-eirene /benchmark /benchmark
-# COPY --from=benchmark-eirene037 /benchmark /benchmark
-COPY --from=benchmark-dionysus2 /benchmark /benchmark
-
-COPY --from=benchmark-ripser-no-emergent /benchmark /benchmark
-COPY --from=benchmark-ripser-store-reduced /benchmark /benchmark
-COPY --from=benchmark-ripser-use-reduced /benchmark /benchmark
-
-RUN ls -l /benchmark
-
diff --git a/benchmarks/output/clifford_torus_50000.ripser.txt b/benchmarks/output/clifford_torus_50000.ripser.txt
deleted file mode 100644
index 756f7ae..0000000
--- a/benchmarks/output/clifford_torus_50000.ripser.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser clifford_torus_50000.points.txt --format point-cloud --dim 2 --threshold .15 --ratio 2"
-	User time (seconds): 129.19
-	System time (seconds): 12.06
-	Percent of CPU this job got: 99%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 2:21.35
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 8593448
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 4911670
-	Voluntary context switches: 7
-	Involuntary context switches: 1506
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/dragon-2.ripser-no-emergent.txt b/benchmarks/output/dragon-2.ripser-no-emergent.txt
deleted file mode 100644
index 2693a67..0000000
--- a/benchmarks/output/dragon-2.ripser-no-emergent.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1"
-	User time (seconds): 40.30
-	System time (seconds): 0.32
-	Percent of CPU this job got: 99%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:40.66
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 257872
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 150721
-	Voluntary context switches: 1
-	Involuntary context switches: 462
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/dragon-2.ripser.txt b/benchmarks/output/dragon-2.ripser.txt
deleted file mode 100644
index 2319b97..0000000
--- a/benchmarks/output/dragon-2.ripser.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser dragon_vrip.ply.txt_2000_.txt --format point-cloud --dim 1"
-	User time (seconds): 1.78
-	System time (seconds): 0.19
-	Percent of CPU this job got: 91%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:02.14
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 257864
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 150721
-	Voluntary context switches: 2
-	Involuntary context switches: 337
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/fractal-r.ripser.txt b/benchmarks/output/fractal-r.ripser.txt
deleted file mode 100644
index f245ae3..0000000
--- a/benchmarks/output/fractal-r.ripser.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser fractal_9_5_2_random_edge_list.txt_0.19795_distmat.txt --dim 2"
-	User time (seconds): 13.98
-	System time (seconds): 1.01
-	Percent of CPU this job got: 98%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:15.16
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 1803484
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 768895
-	Voluntary context switches: 1
-	Involuntary context switches: 1041
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/o3_1024.dipha-multicore.txt b/benchmarks/output/o3_1024.dipha-multicore.txt
deleted file mode 100644
index 9f29568..0000000
--- a/benchmarks/output/o3_1024.dipha-multicore.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "mpiexec --allow-run-as-root --mca btl_vader_single_copy_mechanism none dipha --dual --benchmark --upper_dim 4 o3_1024_1.8.dipha o3_1024_1.8.dipha-multicore.diagram"
-	User time (seconds): 315.48
-	System time (seconds): 2.79
-	Percent of CPU this job got: 787%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:40.42
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 288828
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 6
-	Minor (reclaiming a frame) page faults: 947004
-	Voluntary context switches: 6113
-	Involuntary context switches: 7400
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 16560
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/o3_1024.dipha.txt b/benchmarks/output/o3_1024.dipha.txt
deleted file mode 100644
index 59f810a..0000000
--- a/benchmarks/output/o3_1024.dipha.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "dipha --dual --benchmark --upper_dim 4 o3_1024_1.8.dipha o3_1024_1.8.dipha.diagram"
-	User time (seconds): 45.89
-	System time (seconds): 1.32
-	Percent of CPU this job got: 99%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:47.53
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 1412520
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 1413259
-	Voluntary context switches: 742
-	Involuntary context switches: 393
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 128
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/o3_1024.gudhi.txt b/benchmarks/output/o3_1024.gudhi.txt
deleted file mode 100644
index 27f1c3e..0000000
--- a/benchmarks/output/o3_1024.gudhi.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "gudhi-rips-persistence -d4 -p2 -r 1.8 o3_1024.off"
-	User time (seconds): 13.51
-	System time (seconds): 0.17
-	Percent of CPU this job got: 179%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:07.63
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 624828
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 1
-	Minor (reclaiming a frame) page faults: 155463
-	Voluntary context switches: 116
-	Involuntary context switches: 1252
-	Swaps: 0
-	File system inputs: 232
-	File system outputs: 72
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/o3_1024.ripser-no-emergent.txt b/benchmarks/output/o3_1024.ripser-no-emergent.txt
deleted file mode 100644
index 2c2f69a..0000000
--- a/benchmarks/output/o3_1024.ripser-no-emergent.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2"
-	User time (seconds): 5.24
-	System time (seconds): 0.10
-	Percent of CPU this job got: 100%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:05.32
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 178804
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 60265
-	Voluntary context switches: 1
-	Involuntary context switches: 48
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/o3_1024.ripser-store-reduced.txt b/benchmarks/output/o3_1024.ripser-store-reduced.txt
deleted file mode 100644
index 4fc65cf..0000000
--- a/benchmarks/output/o3_1024.ripser-store-reduced.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2"
-	User time (seconds): 6.50
-	System time (seconds): 0.64
-	Percent of CPU this job got: 98%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:07.23
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 1239792
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 514672
-	Voluntary context switches: 1
-	Involuntary context switches: 100
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/o3_1024.ripser-use-reduced.txt b/benchmarks/output/o3_1024.ripser-use-reduced.txt
deleted file mode 100644
index c93a2c0..0000000
--- a/benchmarks/output/o3_1024.ripser-use-reduced.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2"
-	User time (seconds): 6.37
-	System time (seconds): 0.56
-	Percent of CPU this job got: 99%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:06.94
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 1239568
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 514607
-	Voluntary context switches: 1
-	Involuntary context switches: 111
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/o3_1024.ripser.txt b/benchmarks/output/o3_1024.ripser.txt
deleted file mode 100644
index 1d2f195..0000000
--- a/benchmarks/output/o3_1024.ripser.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser o3_1024.txt --format point-cloud --dim 3 --threshold 1.8 --ratio 2"
-	User time (seconds): 2.07
-	System time (seconds): 0.11
-	Percent of CPU this job got: 96%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:02.26
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 178776
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 60267
-	Voluntary context switches: 1
-	Involuntary context switches: 81
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/o3_4096.gudhi.txt b/benchmarks/output/o3_4096.gudhi.txt
deleted file mode 100644
index 876507a..0000000
--- a/benchmarks/output/o3_4096.gudhi.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "gudhi-rips-persistence -d4 -p2 -r 1.4 o3_4096.off"
-	User time (seconds): 675.55
-	System time (seconds): 25.12
-	Percent of CPU this job got: 198%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 5:52.73
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 18652260
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 4663080
-	Voluntary context switches: 42
-	Involuntary context switches: 12700
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 296
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/o3_4096.ripser-no-emergent.txt b/benchmarks/output/o3_4096.ripser-no-emergent.txt
deleted file mode 100644
index 4b1ff37..0000000
--- a/benchmarks/output/o3_4096.ripser-no-emergent.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser o3_4096.txt --format point-cloud --dim 3 --threshold 1.4 --ratio 2"
-	User time (seconds): 174.88
-	System time (seconds): 2.05
-	Percent of CPU this job got: 100%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 2:56.88
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 3861344
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 1672013
-	Voluntary context switches: 1
-	Involuntary context switches: 594
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/o3_4096.ripser.txt b/benchmarks/output/o3_4096.ripser.txt
deleted file mode 100644
index 2a5d61e..0000000
--- a/benchmarks/output/o3_4096.ripser.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser o3_4096.txt --format point-cloud --dim 3 --threshold 1.4 --ratio 2"
-	User time (seconds): 60.51
-	System time (seconds): 2.02
-	Percent of CPU this job got: 99%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 1:02.54
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 3861300
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 1672012
-	Voluntary context switches: 2
-	Involuntary context switches: 434
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/random.ripser-no-emergent.txt b/benchmarks/output/random.ripser-no-emergent.txt
deleted file mode 100644
index cfdb8fc..0000000
--- a/benchmarks/output/random.ripser-no-emergent.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7"
-	User time (seconds): 13.82
-	System time (seconds): 0.22
-	Percent of CPU this job got: 100%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:14.02
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 339084
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 150128
-	Voluntary context switches: 2
-	Involuntary context switches: 102
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/random.ripser-store-reduced.txt b/benchmarks/output/random.ripser-store-reduced.txt
deleted file mode 100644
index efeb5b5..0000000
--- a/benchmarks/output/random.ripser-store-reduced.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7"
-	User time (seconds): 15.99
-	System time (seconds): 0.92
-	Percent of CPU this job got: 99%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:16.92
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 1366796
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 961778
-	Voluntary context switches: 1
-	Involuntary context switches: 242
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/random.ripser-use-reduced.txt b/benchmarks/output/random.ripser-use-reduced.txt
deleted file mode 100644
index d767db9..0000000
--- a/benchmarks/output/random.ripser-use-reduced.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7"
-	User time (seconds): 16.15
-	System time (seconds): 1.03
-	Percent of CPU this job got: 99%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:17.26
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 1366620
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 964013
-	Voluntary context switches: 1
-	Involuntary context switches: 118
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/random.ripser.txt b/benchmarks/output/random.ripser.txt
deleted file mode 100644
index ac9822c..0000000
--- a/benchmarks/output/random.ripser.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser random_point_cloud_50_16_.txt --format point-cloud --dim 7"
-	User time (seconds): 6.25
-	System time (seconds): 0.18
-	Percent of CPU this job got: 99%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:06.43
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 339084
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 150127
-	Voluntary context switches: 1
-	Involuntary context switches: 62
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/sphere_3_192.ripser-no-emergent.txt b/benchmarks/output/sphere_3_192.ripser-no-emergent.txt
deleted file mode 100644
index 37134ce..0000000
--- a/benchmarks/output/sphere_3_192.ripser-no-emergent.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser sphere_3_192_points.dat --format point-cloud --dim 2"
-	User time (seconds): 5.49
-	System time (seconds): 0.06
-	Percent of CPU this job got: 99%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:05.56
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 201136
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 66913
-	Voluntary context switches: 1
-	Involuntary context switches: 62
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/sphere_3_192.ripser-store-reduced.txt b/benchmarks/output/sphere_3_192.ripser-store-reduced.txt
deleted file mode 100644
index 22e6702..0000000
--- a/benchmarks/output/sphere_3_192.ripser-store-reduced.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser sphere_3_192_points.dat --format point-cloud --dim 2"
-	User time (seconds): 13.80
-	System time (seconds): 1.77
-	Percent of CPU this job got: 99%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:15.57
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 4288268
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 1860885
-	Voluntary context switches: 1
-	Involuntary context switches: 240
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/sphere_3_192.ripser-use-reduced.txt b/benchmarks/output/sphere_3_192.ripser-use-reduced.txt
deleted file mode 100644
index 66d80ac..0000000
--- a/benchmarks/output/sphere_3_192.ripser-use-reduced.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser sphere_3_192_points.dat --format point-cloud --dim 2"
-	User time (seconds): 13.58
-	System time (seconds): 1.76
-	Percent of CPU this job got: 99%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:15.34
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 4288276
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 1865102
-	Voluntary context switches: 1
-	Involuntary context switches: 193
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0
diff --git a/benchmarks/output/sphere_3_192.ripser.txt b/benchmarks/output/sphere_3_192.ripser.txt
deleted file mode 100644
index d6f9446..0000000
--- a/benchmarks/output/sphere_3_192.ripser.txt
+++ /dev/null
@@ -1,23 +0,0 @@
-	Command being timed: "ripser sphere_3_192_points.dat --format point-cloud --dim 2"
-	User time (seconds): 1.04
-	System time (seconds): 0.04
-	Percent of CPU this job got: 99%
-	Elapsed (wall clock) time (h:mm:ss or m:ss): 0:01.08
-	Average shared text size (kbytes): 0
-	Average unshared data size (kbytes): 0
-	Average stack size (kbytes): 0
-	Average total size (kbytes): 0
-	Maximum resident set size (kbytes): 201136
-	Average resident set size (kbytes): 0
-	Major (requiring I/O) page faults: 0
-	Minor (reclaiming a frame) page faults: 66924
-	Voluntary context switches: 1
-	Involuntary context switches: 57
-	Swaps: 0
-	File system inputs: 0
-	File system outputs: 0
-	Socket messages sent: 0
-	Socket messages received: 0
-	Signals delivered: 0
-	Page size (bytes): 4096
-	Exit status: 0