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authorfgodi <fgodi@636b058d-ea47-450e-bf9e-a15bfbe3eedb>2017-11-16 14:25:10 +0000
committerfgodi <fgodi@636b058d-ea47-450e-bf9e-a15bfbe3eedb>2017-11-16 14:25:10 +0000
commit0a0c72f24969de374396378bd0fb82af6f0bdbc5 (patch)
tree89085364ba923f4ff061eef74237f9df0c8fed0d
parente5a2be33e10b0653258252451330c021fa0bc204 (diff)
file added
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/toplex_map@2891 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a89b348bd830123e99ed3f29b1b62526fbc5bbe
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+/* This file is part of the Gudhi Library. The Gudhi library
+ * (Geometric Understanding in Higher Dimensions) is a generic C++
+ * library for computational topology.
+ *
+ * Author(s): Siargey Kachanovich
+ *
+ * Copyright (C) 2016 INRIA (France)
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#include <gudhi/Simplex_tree.h>
+#include <gudhi/Fake_simplex_tree.h>
+#include <gudhi/Euclidean_strong_witness_complex.h>
+#include <gudhi/pick_n_random_points.h>
+#include <gudhi/Points_fvecs_reader.h>
+
+#include <CGAL/Epick_d.h>
+
+#include <iostream>
+#include <fstream>
+#include <ctime>
+#include <string>
+#include <vector>
+
+using K = CGAL::Epick_d<CGAL::Dynamic_dimension_tag>;
+using Point_d = typename K::Point_d;
+using Witness_complex = Gudhi::witness_complex::Euclidean_strong_witness_complex<K>;
+using Point_vector = std::vector<Point_d>;
+
+int main(int argc, char * const argv[]) {
+ if (argc != 5) {
+ std::cerr << "Usage: " << argv[0]
+ << " path_to_point_file number_of_landmarks max_squared_alpha limit_dimension\n";
+ return 0;
+ }
+
+ std::string file_name = argv[1];
+ int nbL = atoi(argv[2]), lim_dim = atoi(argv[4]);
+ double alpha2 = atof(argv[3]);
+ clock_t start, end;
+ //Gudhi::Simplex_tree<> simplex_tree;
+ Gudhi::Fake_simplex_tree simplex_tree;
+
+ // Read the point file
+ Point_vector point_vector, landmarks;
+ Gudhi::load_points_from_fvecs_file<K>(file_name, std::back_insert_iterator< Point_vector >(point_vector));
+
+
+ std::cout << "Successfully read " << point_vector.size() << " points.\n";
+ std::cout << "Ambient dimension is " << point_vector[0].dimension() << ".\n";
+
+ // Choose landmarks
+ Gudhi::subsampling::pick_n_random_points(point_vector, nbL, std::back_inserter(landmarks));
+
+ // Compute witness complex
+ start = clock();
+ Witness_complex witness_complex(landmarks,
+ point_vector);
+
+ witness_complex.create_complex(simplex_tree, alpha2, lim_dim);
+ end = clock();
+ std::cout << "Strong witness complex took "
+ << static_cast<double>(end - start) / CLOCKS_PER_SEC << " s. \n";
+ std::cout << "Number of simplices is: " << simplex_tree.num_simplices() << std::endl;
+ std::cout << "Max dimension is : " << simplex_tree.dimension() << std::endl;
+
+}