Move 2 examples from Bitmap_cubical_complex to utilities

git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2492 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: 40e5f550edb48780d2cf1fe322a5c1d7dd5c80b0

3 files changed, 0 insertions, 189 deletions

diff --git a/src/Bitmap_cubical_complex/example/Bitmap_cubical_complex.cpp b/src/Bitmap_cubical_complex/example/Bitmap_cubical_complex.cpp
deleted file mode 100644
index 67735ba1..00000000
--- a/src/Bitmap_cubical_complex/example/Bitmap_cubical_complex.cpp
+++ /dev/null
@@ -1,80 +0,0 @@
-/*    This file is part of the Gudhi Library. The Gudhi library
- *    (Geometric Understanding in Higher Dimensions) is a generic C++
- *    library for computational topology.
- *
- *    Author(s):       Pawel Dlotko
- *
- *    Copyright (C) 2015  INRIA Saclay (France)
- *
- *    This program is free software: you can redistribute it and/or modify
- *    it under the terms of the GNU General Public License as published by
- *    the Free Software Foundation, either version 3 of the License, or
- *    (at your option) any later version.
- *
- *    This program is distributed in the hope that it will be useful,
- *    but WITHOUT ANY WARRANTY; without even the implied warranty of
- *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- *    GNU General Public License for more details.
- *
- *    You should have received a copy of the GNU General Public License
- *    along with this program.  If not, see <http://www.gnu.org/licenses/>.
- */
-
-
-#include <gudhi/reader_utils.h>
-#include <gudhi/Bitmap_cubical_complex.h>
-#include <gudhi/Persistent_cohomology.h>
-
-// standard stuff
-#include <iostream>
-#include <string>
-#include <vector>
-#include <cstddef>
-
-int main(int argc, char** argv) {
-  std::cout << "This program computes persistent homology, by using bitmap_cubical_complex class, of cubical " <<
-      "complexes provided in text files in Perseus style (the only numbered in the first line is a dimension D of a" <<
-      "bitmap. In the lines I between 2 and D+1 there are numbers of top dimensional cells in the direction I. Let " <<
-      "N denote product of the numbers in the lines between 2 and D. In the lines D+2 to D+2+N there are " <<
-      "filtrations of top dimensional cells. We assume that the cells are in the lexicographical order. See " <<
-      "CubicalOneSphere.txt or CubicalTwoSphere.txt for example.\n" << std::endl;
-
-  if (argc != 2) {
-    std::cerr << "Wrong number of parameters. Please provide the name of a file with a Perseus style bitmap at " <<
-        "the input. The program will now terminate.\n";
-    return 1;
-  }
-
-  typedef Gudhi::cubical_complex::Bitmap_cubical_complex_base<double> Bitmap_cubical_complex_base;
-  typedef Gudhi::cubical_complex::Bitmap_cubical_complex<Bitmap_cubical_complex_base> Bitmap_cubical_complex;
-  typedef Gudhi::persistent_cohomology::Field_Zp Field_Zp;
-  typedef Gudhi::persistent_cohomology::Persistent_cohomology<Bitmap_cubical_complex, Field_Zp> Persistent_cohomology;
-
-  Bitmap_cubical_complex b(argv[1]);
-
-  // Compute the persistence diagram of the complex
-  Persistent_cohomology pcoh(b);
-  int p = 2;
-  double min_persistence = 0;
-
-  pcoh.init_coefficients(p);  // initializes the coefficient field for homology
-  pcoh.compute_persistent_cohomology(min_persistence);
-
-  std::string output_file_name(argv[1]);
-  output_file_name += "_persistence";
-
-  std::size_t last_in_path = output_file_name.find_last_of("/\\");
-
-  if (last_in_path != std::string::npos) {
-    output_file_name = output_file_name.substr(last_in_path+1);
-  }
-
-  std::ofstream out(output_file_name.c_str());
-  pcoh.output_diagram(out);
-  out.close();
-
-  std::cout << "Result in file: " << output_file_name << "\n";
-
-  return 0;
-}
-
diff --git a/src/Bitmap_cubical_complex/example/Bitmap_cubical_complex_periodic_boundary_conditions.cpp b/src/Bitmap_cubical_complex/example/Bitmap_cubical_complex_periodic_boundary_conditions.cpp
deleted file mode 100644
index f8754345..00000000
--- a/src/Bitmap_cubical_complex/example/Bitmap_cubical_complex_periodic_boundary_conditions.cpp
+++ /dev/null
@@ -1,81 +0,0 @@
-/*    This file is part of the Gudhi Library. The Gudhi library
- *    (Geometric Understanding in Higher Dimensions) is a generic C++
- *    library for computational topology.
- *
- *    Author(s):       Pawel Dlotko
- *
- *    Copyright (C) 2015  INRIA Saclay (France)
- *
- *    This program is free software: you can redistribute it and/or modify
- *    it under the terms of the GNU General Public License as published by
- *    the Free Software Foundation, either version 3 of the License, or
- *    (at your option) any later version.
- *
- *    This program is distributed in the hope that it will be useful,
- *    but WITHOUT ANY WARRANTY; without even the implied warranty of
- *    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- *    GNU General Public License for more details.
- *
- *    You should have received a copy of the GNU General Public License
- *    along with this program.  If not, see <http://www.gnu.org/licenses/>.
- */
-
-
-#include <gudhi/reader_utils.h>
-#include <gudhi/Bitmap_cubical_complex.h>
-#include <gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h>
-#include <gudhi/Persistent_cohomology.h>
-
-// standard stuff
-#include <iostream>
-#include <sstream>
-#include <vector>
-
-int main(int argc, char** argv) {
-  std::cout << "This program computes persistent homology, by using " <<
-      "Bitmap_cubical_complex_periodic_boundary_conditions class, of cubical complexes provided in text files in " <<
-      "Perseus style (the only numbered in the first line is a dimension D of a bitmap. In the lines I between 2 " <<
-      "and D+1 there are numbers of top dimensional cells in the direction I. Let N denote product of the numbers " <<
-      "in the lines between 2 and D. In the lines D+2 to D+2+N there are filtrations of top dimensional cells. We " <<
-      "assume that the cells are in the lexicographical order. See CubicalOneSphere.txt or CubicalTwoSphere.txt for" <<
-      " example.\n" << std::endl;
-
-  if (argc != 2) {
-    std::cerr << "Wrong number of parameters. Please provide the name of a file with a Perseus style bitmap at " <<
-        "the input. The program will now terminate.\n";
-    return 1;
-  }
-
-  typedef Gudhi::cubical_complex::Bitmap_cubical_complex_periodic_boundary_conditions_base<double> Bitmap_base;
-  typedef Gudhi::cubical_complex::Bitmap_cubical_complex< Bitmap_base > Bitmap_cubical_complex;
-
-  Bitmap_cubical_complex b(argv[1]);
-
-  typedef Gudhi::persistent_cohomology::Field_Zp Field_Zp;
-  typedef Gudhi::persistent_cohomology::Persistent_cohomology<Bitmap_cubical_complex, Field_Zp> Persistent_cohomology;
-  // Compute the persistence diagram of the complex
-  Persistent_cohomology pcoh(b, true);
-
-  int p = 2;
-  double min_persistence = 0;
-  pcoh.init_coefficients(p);  // initializes the coefficient field for homology
-  pcoh.compute_persistent_cohomology(min_persistence);
-
-  std::string output_file_name(argv[1]);
-  output_file_name += "_persistence";
-
-  std::size_t last_in_path = output_file_name.find_last_of("/\\");
-
-  if (last_in_path != std::string::npos) {
-    output_file_name = output_file_name.substr(last_in_path+1);
-  }
-
-  std::ofstream out(output_file_name.c_str());
-  pcoh.output_diagram(out);
-  out.close();
-
-  std::cout << "Result in file: " << output_file_name << "\n";
-
-  return 0;
-}
-
diff --git a/src/Bitmap_cubical_complex/example/CMakeLists.txt b/src/Bitmap_cubical_complex/example/CMakeLists.txt
index 47f5e0c6..567f25d9 100644
--- a/src/Bitmap_cubical_complex/example/CMakeLists.txt
+++ b/src/Bitmap_cubical_complex/example/CMakeLists.txt
@@ -1,18 +1,6 @@
 cmake_minimum_required(VERSION 2.6)
 project(Bitmap_cubical_complex_examples)
 
-add_executable ( Bitmap_cubical_complex Bitmap_cubical_complex.cpp )
-target_link_libraries(Bitmap_cubical_complex ${Boost_SYSTEM_LIBRARY})
-if (TBB_FOUND)
-  target_link_libraries(Bitmap_cubical_complex ${TBB_LIBRARIES})
-endif()
-
-add_test(NAME Bitmap_cubical_complex_example_persistence_one_sphere COMMAND $<TARGET_FILE:Bitmap_cubical_complex>
-    "${CMAKE_SOURCE_DIR}/data/bitmap/CubicalOneSphere.txt")
-
-add_test(NAME Bitmap_cubical_complex_example_persistence_two_sphere COMMAND $<TARGET_FILE:Bitmap_cubical_complex>
-    "${CMAKE_SOURCE_DIR}/data/bitmap/CubicalTwoSphere.txt")
-
 add_executable ( Random_bitmap_cubical_complex Random_bitmap_cubical_complex.cpp )
 target_link_libraries(Random_bitmap_cubical_complex ${Boost_SYSTEM_LIBRARY})
 if (TBB_FOUND)
@@ -21,20 +9,4 @@ endif()
 add_test(NAME Bitmap_cubical_complex_example_random COMMAND $<TARGET_FILE:Random_bitmap_cubical_complex>
     "2" "100" "100")
 
-add_executable ( Bitmap_cubical_complex_periodic_boundary_conditions Bitmap_cubical_complex_periodic_boundary_conditions.cpp )
-target_link_libraries(Bitmap_cubical_complex_periodic_boundary_conditions ${Boost_SYSTEM_LIBRARY})
-if (TBB_FOUND)
-  target_link_libraries(Bitmap_cubical_complex_periodic_boundary_conditions ${TBB_LIBRARIES})
-endif()
-
-add_test(NAME Bitmap_cubical_complex_example_periodic_boundary_conditions_2d_torus
-    COMMAND $<TARGET_FILE:Bitmap_cubical_complex_periodic_boundary_conditions>
-    "${CMAKE_SOURCE_DIR}/data/bitmap/2d_torus.txt")
-
-add_test(NAME Bitmap_cubical_complex_example_periodic_boundary_conditions_3d_torus
-    COMMAND $<TARGET_FILE:Bitmap_cubical_complex_periodic_boundary_conditions>
-    "${CMAKE_SOURCE_DIR}/data/bitmap/3d_torus.txt")
-
-install(TARGETS Bitmap_cubical_complex DESTINATION bin)
 install(TARGETS Random_bitmap_cubical_complex DESTINATION bin)
-install(TARGETS Bitmap_cubical_complex_periodic_boundary_conditions DESTINATION bin)