CMakeLists.txt uniformization. check_google_style bug fix. generate_version copy Doxyfile

git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cpplint_test@352 636b058d-ea47-450e-bf9e-a15bfbe3eedb

Former-commit-id: a64f89b97ff3acbcf562070cc59b6065013d4aa1

11 files changed, 24 insertions, 7 deletions

diff --git a/src/Persistent_cohomology/example/performance_rips_persistence.cpp b/src/Persistent_cohomology/example/performance_rips_persistence.cpp
index 37d41ee1..077c2b07 100644
--- a/src/Persistent_cohomology/example/performance_rips_persistence.cpp
+++ b/src/Persistent_cohomology/example/performance_rips_persistence.cpp
@@ -31,6 +31,7 @@
 #include <chrono>
 
 using namespace Gudhi;
+using namespace Gudhi::persistent_cohomology;
 
 /* Compute the persistent homology of the complex cpx with coefficients in Z/pZ. */
 template< typename FilteredComplex>
diff --git a/src/Persistent_cohomology/example/rips_multifield_persistence.cpp b/src/Persistent_cohomology/example/rips_multifield_persistence.cpp
index c3203131..2505897e 100644
--- a/src/Persistent_cohomology/example/rips_multifield_persistence.cpp
+++ b/src/Persistent_cohomology/example/rips_multifield_persistence.cpp
@@ -30,6 +30,7 @@
 #include <boost/program_options.hpp>
 
 using namespace Gudhi;
+using namespace Gudhi::persistent_cohomology;
 
 typedef int    Vertex_handle;
 typedef double Filtration_value;
diff --git a/src/Persistent_cohomology/example/rips_persistence.cpp b/src/Persistent_cohomology/example/rips_persistence.cpp
index d7927223..f7f9527f 100644
--- a/src/Persistent_cohomology/example/rips_persistence.cpp
+++ b/src/Persistent_cohomology/example/rips_persistence.cpp
@@ -29,6 +29,7 @@
 #include <boost/program_options.hpp>
 
 using namespace Gudhi;
+using namespace Gudhi::persistent_cohomology;
 
 typedef int        Vertex_handle;
 typedef double     Filtration_value;
diff --git a/src/Persistent_cohomology/example/rips_persistence_from_alpha_shape_3.cpp b/src/Persistent_cohomology/example/rips_persistence_from_alpha_shape_3.cpp
index ddaafea2..e886aea7 100644
--- a/src/Persistent_cohomology/example/rips_persistence_from_alpha_shape_3.cpp
+++ b/src/Persistent_cohomology/example/rips_persistence_from_alpha_shape_3.cpp
@@ -29,6 +29,7 @@
 #include <boost/program_options.hpp>
 
 using namespace Gudhi;
+using namespace Gudhi::persistent_cohomology;
 
 typedef int        Vertex_handle;
 typedef double     Filtration_value;
diff --git a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h
index a5867013..f638a0fb 100644
--- a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h
+++ b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h
@@ -40,6 +40,8 @@
 
 namespace Gudhi {
 
+namespace persistent_cohomology {
+
 /** \defgroup persistent_cohomology Persistent Cohomology Package
  *
  * Computation of persistent cohomology using the algorithm of
@@ -746,6 +748,9 @@ class Persistent_cohomology {
 };
 
 /** @} */  // end defgroup persistent_cohomology
+
+}  // namespace persistent_cohomology
+
 }  // namespace Gudhi
 
 #endif  // SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_H_
diff --git a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h
index 8b09a800..49883a4a 100644
--- a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h
+++ b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h
@@ -28,6 +28,8 @@
 
 namespace Gudhi {
 
+namespace persistent_cohomology {
+
 /** \brief Structure representing the coefficient field \f$\mathbb{Z}/p\mathbb{Z}\f$
  *
  * \implements CoefficientField
@@ -117,6 +119,8 @@ class Field_Zp {
   const Element add_id_all;
 };
 
+}  // namespace persistent_cohomology
+
 }  // namespace Gudhi
 
 #endif  // SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_FIELD_ZP_H_
diff --git a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h
index 5ad4e9cf..306877e7 100644
--- a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h
+++ b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h
@@ -30,6 +30,8 @@
 
 namespace Gudhi {
 
+namespace persistent_cohomology {
+
 /** \brief Structure representing coefficients in a set of finite fields simultaneously
  * using the chinese remainder theorem.
  *
@@ -183,6 +185,8 @@ class Multi_field {
   const Element add_id_all;
 };
 
+}  // namespace persistent_cohomology
+
 }  // namespace Gudhi
 
 #endif  // SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_MULTI_FIELD_H_
diff --git a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Persistent_cohomology_column.h b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Persistent_cohomology_column.h
index 632f8e11..fcec819a 100644
--- a/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Persistent_cohomology_column.h
+++ b/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Persistent_cohomology_column.h
@@ -31,6 +31,8 @@
 
 namespace Gudhi {
 
+namespace persistent_cohomology {
+
 template<typename SimplexKey, typename ArithmeticElement>
 class Persistent_cohomology_column;
 
@@ -139,6 +141,8 @@ class Persistent_cohomology_column : public boost::intrusive::set_base_hook<
   SimplexKey class_key_;
 };
 
+}  // namespace persistent_cohomology
+
 }  // namespace Gudhi
 
 #endif  // SRC_PERSISTENT_COHOMOLOGY_INCLUDE_GUDHI_PERSISTENT_COHOMOLOGY_PERSISTENT_COHOMOLOGY_COLUMN_H_
diff --git a/src/Persistent_cohomology/test/CMakeLists.txt b/src/Persistent_cohomology/test/CMakeLists.txt
index 01432aa1..80689113 100644
--- a/src/Persistent_cohomology/test/CMakeLists.txt
+++ b/src/Persistent_cohomology/test/CMakeLists.txt
@@ -26,10 +26,4 @@ if (LCOV_PATH)
   add_test(src/Persistent_cohomology/lcov/coverage.log ${CMAKE_SOURCE_DIR}/scripts/check_code_coverage.sh ${CMAKE_SOURCE_DIR}/src/Persistent_cohomology)
 endif()
 
-if (PYTHON_PATH)
-  # Cpplint tests on coding style
-  add_test(Persistent_cohomology.h.cpplint ${CMAKE_SOURCE_DIR}/scripts/check_google_style.sh ${CMAKE_SOURCE_DIR}/src/Persistent_cohomology/include/gudhi/Persistent_cohomology.h)
-  add_test(Field_Zp.h.cpplint ${CMAKE_SOURCE_DIR}/scripts/check_google_style.sh ${CMAKE_SOURCE_DIR}/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Field_Zp.h)
-  add_test(Multi_field.h.cpplint ${CMAKE_SOURCE_DIR}/scripts/check_google_style.sh ${CMAKE_SOURCE_DIR}/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Multi_field.h)
-  add_test(Persistent_cohomology_column.h.cpplint ${CMAKE_SOURCE_DIR}/scripts/check_google_style.sh ${CMAKE_SOURCE_DIR}/src/Persistent_cohomology/include/gudhi/Persistent_cohomology/Persistent_cohomology_column.h)
-endif()
\ No newline at end of file
+cpplint_add_tests("${CMAKE_SOURCE_DIR}/src/Persistent_cohomology/include/gudhi")
diff --git a/src/Persistent_cohomology/test/persistent_cohomology_unit_test.cpp b/src/Persistent_cohomology/test/persistent_cohomology_unit_test.cpp
index e180bea3..1b0cc152 100644
--- a/src/Persistent_cohomology/test/persistent_cohomology_unit_test.cpp
+++ b/src/Persistent_cohomology/test/persistent_cohomology_unit_test.cpp
@@ -16,6 +16,7 @@
 #include "gudhi/Persistent_cohomology.h"
 
 using namespace Gudhi;
+using namespace Gudhi::persistent_cohomology;
 
 typedef Simplex_tree<> typeST;
 
diff --git a/src/Persistent_cohomology/test/persistent_cohomology_unit_test_multi_field.cpp b/src/Persistent_cohomology/test/persistent_cohomology_unit_test_multi_field.cpp
index cef29bb0..91cf5784 100644
--- a/src/Persistent_cohomology/test/persistent_cohomology_unit_test_multi_field.cpp
+++ b/src/Persistent_cohomology/test/persistent_cohomology_unit_test_multi_field.cpp
@@ -17,6 +17,7 @@
 #include "gudhi/Persistent_cohomology/Multi_field.h"
 
 using namespace Gudhi;
+using namespace Gudhi::persistent_cohomology;
 
 typedef Simplex_tree<> typeST;