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authorvrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb>2015-10-02 13:13:38 +0000
committervrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb>2015-10-02 13:13:38 +0000
commitc14909eae41883308428095758360de3a7202a0d (patch)
tree6c3c40dbe6c006ec65a54a6373b5e6129012a4fb /src/Simplex_tree
parent91b4846b860988f94346cdf1302c1cfd965c3d27 (diff)
Backmerge of trunk
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@820 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 812e0b84d187dd5e30a6a18c12612ebc9bf9206a
Diffstat (limited to 'src/Simplex_tree')
-rw-r--r--src/Simplex_tree/concept/IndexingTag.h2
-rw-r--r--src/Simplex_tree/concept/SimplexKey.h4
-rw-r--r--src/Simplex_tree/concept/SimplexTreeOptions.h41
-rw-r--r--src/Simplex_tree/concept/VertexHandle.h3
-rw-r--r--src/Simplex_tree/example/CMakeLists.txt9
-rw-r--r--src/Simplex_tree/example/mini_simplex_tree.cpp68
-rw-r--r--src/Simplex_tree/include/gudhi/Simplex_tree.h354
-rw-r--r--src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h43
-rw-r--r--src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_siblings.h6
-rw-r--r--src/Simplex_tree/test/simplex_tree_unit_test.cpp276
10 files changed, 537 insertions, 269 deletions
diff --git a/src/Simplex_tree/concept/IndexingTag.h b/src/Simplex_tree/concept/IndexingTag.h
index d690da11..1dcdd756 100644
--- a/src/Simplex_tree/concept/IndexingTag.h
+++ b/src/Simplex_tree/concept/IndexingTag.h
@@ -25,6 +25,6 @@
* continuous maps to a cell complex, and compute its persistent
* homology.
*
- * Must be linear_indexing_tag.
+ * Must be `Gudhi::linear_indexing_tag`.
*/
struct IndexingTag {};
diff --git a/src/Simplex_tree/concept/SimplexKey.h b/src/Simplex_tree/concept/SimplexKey.h
index ce5b2382..7fdbdd84 100644
--- a/src/Simplex_tree/concept/SimplexKey.h
+++ b/src/Simplex_tree/concept/SimplexKey.h
@@ -22,7 +22,7 @@
/** \brief Key type used as simplex identifier.
*
- * Must be <CODE>int</CODE>
+ * Must be a signed integer type.
*/
struct SimplexKey {};
- \ No newline at end of file
+
diff --git a/src/Simplex_tree/concept/SimplexTreeOptions.h b/src/Simplex_tree/concept/SimplexTreeOptions.h
new file mode 100644
index 00000000..a50a2bf1
--- /dev/null
+++ b/src/Simplex_tree/concept/SimplexTreeOptions.h
@@ -0,0 +1,41 @@
+ /* This file is part of the Gudhi Library. The Gudhi library
+ * (Geometric Understanding in Higher Dimensions) is a generic C++
+ * library for computational topology.
+ *
+ * Author(s): Marc Glisse
+ *
+ * Copyright (C) 2015 INRIA Saclay - Ile-de-France (France)
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+/** \brief Concept of the template parameter for the class `Gudhi::Simplex_tree<SimplexTreeOptions>`.
+ *
+ * One model for this is `Gudhi::Simplex_tree_options_full_featured`. If you want to provide your own, it is recommended that you derive from it and override some parts instead of writing a class from scratch.
+ */
+struct SimplexTreeOptions {
+ /// Forced for now.
+ typedef IndexingTag Indexing_tag;
+ /// Must be a signed integer type. It admits a total order <.
+ typedef VertexHandle Vertex_handle;
+ /// Must be comparable with operator<.
+ typedef FiltrationValue Filtration_value;
+ /// Must be a signed integer type.
+ typedef SimplexKey Simplex_key;
+ /// If true, each simplex has extra storage for one `Simplex_key`. Necessary for `Persistent_cohomology`.
+ static constexpr bool store_key;
+ /// If true, each simplex has extra storage for one `Filtration_value`, and this value is propagated by operations like `Gudhi::Simplex_tree<SimplexTreeOptions>::expansion`. Without it, `Persistent_cohomology` degenerates to computing usual (non-persistent) cohomology.
+ static constexpr bool store_filtration;
+};
+
diff --git a/src/Simplex_tree/concept/VertexHandle.h b/src/Simplex_tree/concept/VertexHandle.h
index 491f0f56..3efbba61 100644
--- a/src/Simplex_tree/concept/VertexHandle.h
+++ b/src/Simplex_tree/concept/VertexHandle.h
@@ -22,5 +22,6 @@
/** \brief Handle type for the vertices of a cell complex.
*
- * Must be int.*/
+ * Must be a signed integer type. <code>operator&lt;</code> defines a total order on it.
+ */
struct VertexHandle {};
diff --git a/src/Simplex_tree/example/CMakeLists.txt b/src/Simplex_tree/example/CMakeLists.txt
index 1a3cdfbf..2f924490 100644
--- a/src/Simplex_tree/example/CMakeLists.txt
+++ b/src/Simplex_tree/example/CMakeLists.txt
@@ -7,15 +7,18 @@ add_test(simplex_tree_from_file_3 ${CMAKE_CURRENT_BINARY_DIR}/simplex_tree_from_
add_executable ( simple_simplex_tree simple_simplex_tree.cpp )
add_test(simple_simplex_tree ${CMAKE_CURRENT_BINARY_DIR}/simple_simplex_tree)
-
+
+add_executable ( mini_simplex_tree mini_simplex_tree.cpp )
+add_test(mini_simplex_tree ${CMAKE_CURRENT_BINARY_DIR}/mini_simplex_tree)
+
# An example with Simplex-tree using CGAL alpha_shapes_3
if(GMP_FOUND AND CGAL_FOUND)
message("CGAL_lib = ${CGAL_LIBRARIES_DIR}")
- message("GMP_LIBRARIES = ${GMP_LIBRARIES}")
+ message("GMP_LIBRARIES = ${GMP_LIBRARIES}")
INCLUDE_DIRECTORIES(${GMP_INCLUDE_DIR})
INCLUDE_DIRECTORIES(${CGAL_INCLUDE_DIRS})
add_executable ( simplex_tree_from_alpha_shapes_3 simplex_tree_from_alpha_shapes_3.cpp )
target_link_libraries(simplex_tree_from_alpha_shapes_3 ${GMP_LIBRARIES} ${CGAL_LIBRARY})
add_test(simplex_tree_from_alpha_shapes_3 ${CMAKE_CURRENT_BINARY_DIR}/simplex_tree_from_alpha_shapes_3 ${CMAKE_SOURCE_DIR}/data/points/bunny_5000)
-endif()
+endif()
diff --git a/src/Simplex_tree/example/mini_simplex_tree.cpp b/src/Simplex_tree/example/mini_simplex_tree.cpp
new file mode 100644
index 00000000..08d626d3
--- /dev/null
+++ b/src/Simplex_tree/example/mini_simplex_tree.cpp
@@ -0,0 +1,68 @@
+/* This file is part of the Gudhi Library. The Gudhi library
+ * (Geometric Understanding in Higher Dimensions) is a generic C++
+ * library for computational topology.
+ *
+ * Author(s): Marc Glisse
+ *
+ * Copyright (C) 2015 INRIA Saclay - Ile-de-France (France)
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#include <gudhi/Simplex_tree.h>
+#include <iostream>
+#include <initializer_list>
+
+using namespace Gudhi;
+
+struct MyOptions : Simplex_tree_options_full_featured {
+ // Not doing persistence, so we don't need those
+ static const bool store_key = false;
+ static const bool store_filtration = false;
+ // I have few vertices
+ typedef short Vertex_handle;
+};
+typedef Simplex_tree<MyOptions> ST;
+
+// Dictionary should be private, but for now this is the easiest way.
+static_assert(sizeof(ST::Dictionary::value_type) < sizeof(Simplex_tree<>::Dictionary::value_type),
+ "Not storing the filtration and key should save some space");
+
+int main() {
+ ST st;
+
+ /* Complex to build. */
+ /* 1 */
+ /* o */
+ /* /X\ */
+ /* o---o---o */
+ /* 2 0 3 */
+
+ auto triangle012 = {0, 1, 2};
+ auto edge03 = {0, 3};
+ st.insert_simplex_and_subfaces(triangle012);
+ st.insert_simplex_and_subfaces(edge03);
+ // FIXME: Remove this line
+ st.set_dimension(2);
+
+ auto edge02 = {0, 2};
+ ST::Simplex_handle e = st.find(edge02);
+ assert(st.filtration(e) == 0); // We are not using filtrations so everything has value 0
+ for(ST::Simplex_handle t : st.cofaces_simplex_range(e, 1)) // Only coface is 012
+ {
+ for(ST::Vertex_handle v : st.simplex_vertex_range(t)) // v in { 0, 1, 2 }
+ std::cout << v;
+ std::cout << '\n';
+ }
+}
diff --git a/src/Simplex_tree/include/gudhi/Simplex_tree.h b/src/Simplex_tree/include/gudhi/Simplex_tree.h
index 279327f7..6a47083c 100644
--- a/src/Simplex_tree/include/gudhi/Simplex_tree.h
+++ b/src/Simplex_tree/include/gudhi/Simplex_tree.h
@@ -28,6 +28,9 @@
#include <gudhi/Simplex_tree/Simplex_tree_iterators.h>
#include <gudhi/Simplex_tree/indexing_tag.h>
+#include <gudhi/reader_utils.h>
+#include <gudhi/graph_simplicial_complex.h>
+
#include <boost/container/flat_map.hpp>
#include <boost/iterator/transform_iterator.hpp>
#include <boost/graph/adjacency_list.hpp>
@@ -72,6 +75,17 @@ namespace Gudhi {
* \copyright GNU General Public License v3.
* @{
*/
+
+/// Model of SimplexTreeOptions.
+struct Simplex_tree_options_full_featured {
+ typedef linear_indexing_tag Indexing_tag;
+ typedef int Vertex_handle;
+ typedef double Filtration_value;
+ typedef int Simplex_key;
+ static const bool store_key = true;
+ static const bool store_filtration = true;
+};
+
/**
* \brief Simplex Tree data structure for representing simplicial complexes.
*
@@ -83,35 +97,63 @@ namespace Gudhi {
* \implements FilteredComplex
*
*/
-template<typename IndexingTag = linear_indexing_tag,
-typename FiltrationValue = double, typename SimplexKey = int // must be a signed integer type
-, typename VertexHandle = int // must be a signed integer type, int convertible to it
->
+
+template<typename SimplexTreeOptions = Simplex_tree_options_full_featured>
class Simplex_tree {
public:
- typedef IndexingTag Indexing_tag;
+ typedef SimplexTreeOptions Options;
+ typedef typename Options::Indexing_tag Indexing_tag;
/** \brief Type for the value of the filtration function.
*
* Must be comparable with <. */
- typedef FiltrationValue Filtration_value;
+ typedef typename Options::Filtration_value Filtration_value;
/** \brief Key associated to each simplex.
*
* Must be a signed integer type. */
- typedef SimplexKey Simplex_key;
+ typedef typename Options::Simplex_key Simplex_key;
/** \brief Type for the vertex handle.
*
* Must be a signed integer type. It admits a total order <. */
- typedef VertexHandle Vertex_handle;
+ typedef typename Options::Vertex_handle Vertex_handle;
/* Type of node in the simplex tree. */
typedef Simplex_tree_node_explicit_storage<Simplex_tree> Node;
/* Type of dictionary Vertex_handle -> Node for traversing the simplex tree. */
+ // Note: this wastes space when Vertex_handle is 32 bits and Node is aligned on 64 bits. It would be better to use a flat_set (with our own comparator) where we can control the layout of the struct (put Vertex_handle and Simplex_key next to each other).
typedef typename boost::container::flat_map<Vertex_handle, Node> Dictionary;
/* \brief Set of nodes sharing a same parent in the simplex tree. */
/* \brief Set of nodes sharing a same parent in the simplex tree. */
typedef Simplex_tree_siblings<Simplex_tree, Dictionary> Siblings;
+ struct Key_simplex_base_real {
+ Key_simplex_base_real() : key_(-1) {}
+ void assign_key(Simplex_key k) { key_ = k; }
+ Simplex_key key() const { return key_; }
+ private:
+ Simplex_key key_;
+ };
+ struct Key_simplex_base_dummy {
+ Key_simplex_base_dummy() {}
+ void assign_key(Simplex_key) { }
+ Simplex_key key() const { assert(false); return -1; }
+ };
+ typedef typename std::conditional<Options::store_key, Key_simplex_base_real, Key_simplex_base_dummy>::type Key_simplex_base;
+
+ struct Filtration_simplex_base_real {
+ Filtration_simplex_base_real() : filt_(0) {}
+ void assign_filtration(Filtration_value f) { filt_ = f; }
+ Filtration_value filtration() const { return filt_; }
+ private:
+ Filtration_value filt_;
+ };
+ struct Filtration_simplex_base_dummy {
+ Filtration_simplex_base_dummy() {}
+ void assign_filtration(Filtration_value f) { assert(f == 0); }
+ Filtration_value filtration() const { return 0; }
+ };
+ typedef typename std::conditional<Options::store_filtration, Filtration_simplex_base_real, Filtration_simplex_base_dummy>::type Filtration_simplex_base;
+
public:
/** \brief Handle type to a simplex contained in the simplicial complex represented
* by the simplex tree. */
@@ -170,12 +212,12 @@ class Simplex_tree {
/** \brief Range over the simplices of the skeleton of the simplicial complex, for a given
* dimension. */
typedef boost::iterator_range<Skeleton_simplex_iterator> Skeleton_simplex_range;
+ /** \brief Range over the simplices of the simplicial complex, ordered by the filtration. */
+ typedef std::vector<Simplex_handle> Filtration_simplex_range;
/** \brief Iterator over the simplices of the simplicial complex, ordered by the filtration.
*
* 'value_type' is Simplex_handle. */
- typedef typename std::vector<Simplex_handle>::iterator Filtration_simplex_iterator;
- /** \brief Range over the simplices of the simplicial complex, ordered by the filtration. */
- typedef boost::iterator_range<Filtration_simplex_iterator> Filtration_simplex_range;
+ typedef typename Filtration_simplex_range::const_iterator Filtration_simplex_iterator;
/* @} */ // end name range and iterator types
/** \name Range and iterator methods
@@ -226,17 +268,13 @@ class Simplex_tree {
* order is used.
*
* The filtration must be valid. If the filtration has not been initialized yet, the
- * method initializes it (i.e. order the simplices). */
- Filtration_simplex_range filtration_simplex_range(Indexing_tag) {
+ * method initializes it (i.e. order the simplices). If the complex has changed since the last time the filtration
+ * was initialized, please call `initialize_filtration()` to recompute it. */
+ Filtration_simplex_range const& filtration_simplex_range(Indexing_tag=Indexing_tag()) {
if (filtration_vect_.empty()) {
initialize_filtration();
}
- return Filtration_simplex_range(filtration_vect_.begin(),
- filtration_vect_.end());
- }
-
- Filtration_simplex_range filtration_simplex_range() {
- return filtration_simplex_range(Indexing_tag());
+ return filtration_vect_;
}
/** \brief Returns a range over the vertices of a simplex.
@@ -278,9 +316,47 @@ class Simplex_tree {
Simplex_tree()
: null_vertex_(-1),
threshold_(0),
- root_(NULL, null_vertex_),
+ root_(nullptr, null_vertex_),
+ filtration_vect_(),
+ dimension_(-1) { }
+
+ /** \brief User-defined copy constructor reproduces the whole tree structure. */
+ Simplex_tree(const Simplex_tree& simplex_source)
+ : null_vertex_(simplex_source.null_vertex_),
+ threshold_(simplex_source.threshold_),
filtration_vect_(),
- dimension_(-1) {
+ dimension_(simplex_source.dimension_) {
+ auto root_source = simplex_source.root_;
+ auto memb_source = root_source.members();
+ root_ = Siblings(nullptr, null_vertex_, memb_source);
+ rec_copy(&root_, &root_source);
+ }
+
+ /** \brief depth first search, inserts simplices when reaching a leaf. */
+ void rec_copy(Siblings *sib, Siblings *sib_source) {
+ for (auto sh = sib->members().begin(), sh_source = sib_source->members().begin();
+ sh != sib->members().end(); ++sh, ++sh_source) {
+ if (has_children(sh_source)) {
+ Siblings * newsib = new Siblings(sib, sh_source->first);
+ newsib->members_.reserve(sh_source->second.children()->members().size());
+ for (auto & child : sh_source->second.children()->members())
+ newsib->members_.emplace_hint(newsib->members_.end(), child.first, Node(sib, child.second.filtration()));
+ rec_copy(newsib, sh_source->second.children());
+ sh->second.assign_children(newsib);
+ }
+ }
+ }
+
+ /** \brief User-defined move constructor moves the whole tree structure. */
+ Simplex_tree(Simplex_tree && old)
+ : null_vertex_(std::move(old.null_vertex_)),
+ threshold_(std::move(old.threshold_)),
+ root_(std::move(old.root_)),
+ filtration_vect_(std::move(old.filtration_vect_)),
+ dimension_(std::move(old.dimension_)) {
+ old.dimension_ = -1;
+ old.threshold_ = 0;
+ old.root_ = Siblings(nullptr, null_vertex_);
}
/** \brief Destructor; deallocates the whole tree structure. */
@@ -304,23 +380,63 @@ class Simplex_tree {
}
public:
+ /** \brief Checks if two simplex trees are equal. */
+ bool operator==(Simplex_tree& st2) {
+ if ((null_vertex_ != st2.null_vertex_) ||
+ (threshold_ != st2.threshold_) ||
+ (dimension_ != st2.dimension_))
+ return false;
+ return rec_equal(&root_, &st2.root_);
+ }
+
+ /** \brief Checks if two simplex trees are different. */
+ bool operator!=(Simplex_tree& st2) {
+ return (!(*this == st2));
+ }
+
+ private:
+ /** rec_equal: Checks recursively whether or not two simplex trees are equal, using depth first search. */
+ bool rec_equal(Siblings* s1, Siblings* s2) {
+ if (s1->members().size() != s2->members().size())
+ return false;
+ for (auto sh1 = s1->members().begin(), sh2 = s2->members().begin();
+ (sh1 != s1->members().end() && sh2 != s2->members().end()); ++sh1, ++sh2) {
+ if (sh1->first != sh2->first || sh1->second.filtration() != sh2->second.filtration())
+ return false;
+ if (has_children(sh1) != has_children(sh2))
+ return false;
+ // Recursivity on children only if both have children
+ else if (has_children(sh1))
+ if (!rec_equal(sh1->second.children(), sh2->second.children()))
+ return false;
+ }
+ return true;
+ }
+
+ public:
/** \brief Returns the key associated to a simplex.
*
- * The filtration must be initialized. */
+ * The filtration must be initialized.
+ * \pre SimplexTreeOptions::store_key
+ */
static Simplex_key key(Simplex_handle sh) {
return sh->second.key();
}
/** \brief Returns the simplex associated to a key.
*
- * The filtration must be initialized. */
+ * The filtration must be initialized.
+ * \pre SimplexTreeOptions::store_key
+ */
Simplex_handle simplex(Simplex_key key) const {
return filtration_vect_[key];
}
/** \brief Returns the filtration value of a simplex.
*
- * Called on the null_simplex, returns INFINITY. */
+ * Called on the null_simplex, returns INFINITY.
+ * If SimplexTreeOptions::store_filtration is false, returns 0.
+ */
static Filtration_value filtration(Simplex_handle sh) {
if (sh != null_simplex()) {
return sh->second.filtration();
@@ -348,7 +464,7 @@ class Simplex_tree {
*
* One can call filtration(null_simplex()). */
static Simplex_handle null_simplex() {
- return Dictionary_it(NULL);
+ return Dictionary_it(nullptr);
}
/** \brief Returns a key different for all keys associated to the
@@ -395,7 +511,7 @@ class Simplex_tree {
int dimension(Simplex_handle sh) {
Siblings * curr_sib = self_siblings(sh);
int dim = 0;
- while (curr_sib != NULL) {
+ while (curr_sib != nullptr) {
++dim;
curr_sib = curr_sib->oncles();
}
@@ -413,26 +529,34 @@ class Simplex_tree {
return (sh->second.children()->parent() == sh->first);
}
- public:
- /** \brief Given a range of Vertex_handles, returns the Simplex_handle
+ /** \brief Given a range of Vertex_handles, returns the Simplex_handle
* of the simplex in the simplicial complex containing the corresponding
* vertices. Return null_simplex() if the simplex is not in the complex.
*
- * The type RandomAccessVertexRange must be a range for which .begin() and
- * .end() return random access iterators, with <CODE>value_type</CODE>
- * <CODE>Vertex_handle</CODE>.
+ * The type InputVertexRange must be a range of <CODE>Vertex_handle</CODE>
+ * on which we can call std::begin() function
*/
- template<class RandomAccessVertexRange>
- Simplex_handle find(RandomAccessVertexRange & s) {
- if (s.begin() == s.end()) // Empty simplex
- return null_simplex();
-
- sort(s.begin(), s.end());
+ template<class InputVertexRange>
+ Simplex_handle find(const InputVertexRange & s) {
+ auto first = std::begin(s);
+ auto last = std::end(s);
+
+ if (first == last)
+ return null_simplex(); // ----->>
+
+ // Copy before sorting
+ std::vector<Vertex_handle> copy(first, last);
+ std::sort(std::begin(copy), std::end(copy));
+ return find_simplex(copy);
+ }
+ private:
+ /** Find function, with a sorted range of vertices. */
+ Simplex_handle find_simplex(const std::vector<Vertex_handle> & simplex) {
Siblings * tmp_sib = &root_;
Dictionary_it tmp_dit;
- Vertex_handle last = s[s.size() - 1];
- for (auto v : s) {
+ Vertex_handle last = simplex.back();
+ for (auto v : simplex) {
tmp_dit = tmp_sib->members_.find(v);
if (tmp_dit == tmp_sib->members_.end()) {
return null_simplex();
@@ -450,43 +574,17 @@ class Simplex_tree {
Simplex_handle find_vertex(Vertex_handle v) {
return root_.members_.begin() + v;
}
-
- /** \brief Insert a simplex, represented by a range of Vertex_handles, in the simplicial complex.
- *
- * @param[in] simplex range of Vertex_handles, representing the vertices of the new simplex
- * @param[in] filtration the filtration value assigned to the new simplex.
- * The return type is a pair. If the new simplex is inserted successfully (i.e. it was not in the
- * simplicial complex yet) the bool is set to true and the Simplex_handle is the handle assigned
- * to the new simplex.
- * If the insertion fails (the simplex is already there), the bool is set to false. If the insertion
- * fails and the simplex already in the complex has a filtration value strictly bigger than 'filtration',
- * we assign this simplex with the new value 'filtration', and set the Simplex_handle filed of the
- * output pair to the Simplex_handle of the simplex. Otherwise, we set the Simplex_handle part to
- * null_simplex.
- *
- * All subsimplices do not necessary need to be already in the simplex tree to proceed to an
- * insertion. However, the property of being a simplicial complex will be violated. This allows
- * us to insert a stream of simplices contained in a simplicial complex without considering any
- * order on them.
- *
- * The filtration value
- * assigned to the new simplex must preserve the monotonicity of the filtration.
- *
- * The type RandomAccessVertexRange must be a range for which .begin() and
- * .end() return random access iterators, with 'value_type' Vertex_handle. */
- template<class RandomAccessVertexRange>
- std::pair<Simplex_handle, bool> insert_simplex(RandomAccessVertexRange & simplex,
- Filtration_value filtration) {
- if (simplex.empty()) {
- return std::pair<Simplex_handle, bool>(null_simplex(), true);
- }
- // must be sorted in increasing order
- sort(simplex.begin(), simplex.end());
+ //{ return root_.members_.find(v); }
+ private:
+ /** \brief Inserts a simplex represented by a vector of vertex.
+ \warning the vector must be sorted by increasing vertex handle order */
+ std::pair<Simplex_handle, bool> insert_vertex_vector(const std::vector<Vertex_handle>& simplex,
+ Filtration_value filtration) {
Siblings * curr_sib = &root_;
std::pair<Simplex_handle, bool> res_insert;
- typename RandomAccessVertexRange::iterator vi;
- for (vi = simplex.begin(); vi != simplex.end() - 1; ++vi) {
+ auto vi = simplex.begin();
+ for (; vi != simplex.end() - 1; ++vi) {
res_insert = curr_sib->members_.emplace(*vi, Node(curr_sib, filtration));
if (!(has_children(res_insert.first))) {
res_insert.first->second.assign_children(new Siblings(curr_sib, *vi));
@@ -508,24 +606,77 @@ class Simplex_tree {
return res_insert;
}
- /** \brief Insert a N-simplex and all his subfaces, from a N-simplex represented by a range of
+ public:
+ /** \brief Insert a simplex, represented by a range of Vertex_handles, in the simplicial complex.
+ *
+ * @param[in] simplex range of Vertex_handles, representing the vertices of the new simplex
+ * @param[in] filtration the filtration value assigned to the new simplex.
+ * The return type is a pair. If the new simplex is inserted successfully (i.e. it was not in the
+ * simplicial complex yet) the bool is set to true and the Simplex_handle is the handle assigned
+ * to the new simplex.
+ * If the insertion fails (the simplex is already there), the bool is set to false. If the insertion
+ * fails and the simplex already in the complex has a filtration value strictly bigger than 'filtration',
+ * we assign this simplex with the new value 'filtration', and set the Simplex_handle field of the
+ * output pair to the Simplex_handle of the simplex. Otherwise, we set the Simplex_handle part to
+ * null_simplex.
+ *
+ * All subsimplices do not necessary need to be already in the simplex tree to proceed to an
+ * insertion. However, the property of being a simplicial complex will be violated. This allows
+ * us to insert a stream of simplices contained in a simplicial complex without considering any
+ * order on them.
+ *
+ * The filtration value
+ * assigned to the new simplex must preserve the monotonicity of the filtration.
+ *
+ * The type InputVertexRange must be a range for which .begin() and
+ * .end() return input iterators, with 'value_type' Vertex_handle. */
+ template<class InputVertexRange>
+ std::pair<Simplex_handle, bool> insert_simplex(const InputVertexRange & simplex,
+ Filtration_value filtration = 0) {
+ auto first = std::begin(simplex);
+ auto last = std::end(simplex);
+
+ if (first == last)
+ return std::pair<Simplex_handle, bool>(null_simplex(), true); // ----->>
+
+ // Copy before sorting
+ std::vector<Vertex_handle> copy(first, last);
+ std::sort(std::begin(copy), std::end(copy));
+ return insert_vertex_vector(copy, filtration);
+ }
+
+ /** \brief Insert a N-simplex and all his subfaces, from a N-simplex represented by a range of
* Vertex_handles, in the simplicial complex.
*
* @param[in] Nsimplex range of Vertex_handles, representing the vertices of the new N-simplex
* @param[in] filtration the filtration value assigned to the new N-simplex.
+ * The return type is a pair. If the new simplex is inserted successfully (i.e. it was not in the
+ * simplicial complex yet) the bool is set to true and the Simplex_handle is the handle assigned
+ * to the new simplex.
+ * If the insertion fails (the simplex is already there), the bool is set to false. If the insertion
+ * fails and the simplex already in the complex has a filtration value strictly bigger than 'filtration',
+ * we assign this simplex with the new value 'filtration', and set the Simplex_handle field of the
+ * output pair to the Simplex_handle of the simplex. Otherwise, we set the Simplex_handle part to
+ * null_simplex.
*/
- template<class RandomAccessVertexRange>
- std::pair<Simplex_handle, bool> insert_simplex_and_subfaces(const RandomAccessVertexRange& Nsimplex,
- Filtration_value filtration = 0.0) {
- // Simplex copy
- std::vector<Vertex_handle> the_simplex(Nsimplex.begin(), Nsimplex.end());
- // must be sorted in increasing order
- std::sort(the_simplex.begin(), the_simplex.end());
+ template<class InputVertexRange>
+ std::pair<Simplex_handle, bool> insert_simplex_and_subfaces(const InputVertexRange& Nsimplex,
+ Filtration_value filtration = 0) {
+ auto first = std::begin(Nsimplex);
+ auto last = std::end(Nsimplex);
+
+ if (first == last)
+ return std::pair<Simplex_handle, bool>(null_simplex(), true); // ----->>
+
+ // Copy before sorting
+ std::vector<Vertex_handle> copy(first, last);
+ std::sort(std::begin(copy), std::end(copy));
+
std::vector<std::vector<Vertex_handle>> to_be_inserted;
std::vector<std::vector<Vertex_handle>> to_be_propagated;
- return rec_insert_simplex_and_subfaces(the_simplex, to_be_inserted, to_be_propagated, filtration);
+ return rec_insert_simplex_and_subfaces(copy, to_be_inserted, to_be_propagated, filtration);
}
-
+
private:
std::pair<Simplex_handle, bool> rec_insert_simplex_and_subfaces(std::vector<Vertex_handle>& the_simplex,
std::vector<std::vector<Vertex_handle>>& to_be_inserted,
@@ -534,15 +685,15 @@ class Simplex_tree {
std::pair<Simplex_handle, bool> insert_result;
if (the_simplex.size() > 1) {
// Get and remove last vertex
- Vertex_handle last_vertex= the_simplex.back();
+ Vertex_handle last_vertex = the_simplex.back();
the_simplex.pop_back();
// Recursive call after last vertex removal
insert_result = rec_insert_simplex_and_subfaces(the_simplex, to_be_inserted, to_be_propagated, filtration);
-
+
// Concatenation of to_be_inserted and to_be_propagated
to_be_inserted.insert(to_be_inserted.begin(), to_be_propagated.begin(), to_be_propagated.end());
to_be_propagated = to_be_inserted;
-
+
// to_be_inserted treatment
for (auto& simplex_tbi : to_be_inserted) {
simplex_tbi.push_back(last_vertex);
@@ -557,26 +708,23 @@ class Simplex_tree {
// insert all to_be_inserted
for (auto& simplex_tbi : to_be_inserted) {
- insert_result = insert_simplex(simplex_tbi, filtration);
+ insert_result = insert_vertex_vector(simplex_tbi, filtration);
}
-
-
} else if (the_simplex.size() == 1) {
// When reaching the end of recursivity, vector of simplices shall be empty and filled on back recursive
- if ((to_be_inserted.size() != 0) || (to_be_propagated.size() != 0)){
+ if ((to_be_inserted.size() != 0) || (to_be_propagated.size() != 0)) {
std::cerr << "Simplex_tree::rec_insert_simplex_and_subfaces - Error vector not empty" << std::endl;
exit(-1);
}
std::vector<Vertex_handle> first_simplex(1, the_simplex.back());
// i.e. (0,1,2) => [to_be_inserted | to_be_propagated] = [(0) | ]
to_be_inserted.push_back(first_simplex);
-
- insert_result = insert_simplex(first_simplex, filtration);
+
+ insert_result = insert_vertex_vector(first_simplex, filtration);
} else {
std::cerr << "Simplex_tree::rec_insert_simplex_and_subfaces - Recursivity error" << std::endl;
exit(-1);
}
-
return insert_result;
}
@@ -603,17 +751,6 @@ class Simplex_tree {
return sh->second.children();
}
- // void display_simplex(Simplex_handle sh)
- // {
- // std::cout << " " << "[" << filtration(sh) << "] ";
- // for( auto vertex : simplex_vertex_range(sh) )
- // { std::cout << vertex << " "; }
- // }
-
- // void print(Simplex_handle sh, std::ostream& os = std::cout)
- // { for(auto v : simplex_vertex_range(sh)) {os << v << " ";}
- // os << std::endl; }
-
public:
/** Returns a pointer to the root nodes of the simplex tree. */
Siblings * root() {
@@ -778,8 +915,9 @@ class Simplex_tree {
: st_(st) { }
bool operator()(const Simplex_handle sh1, const Simplex_handle sh2) const {
- if (st_->filtration(sh1) != st_->filtration(sh2)) {
- return st_->filtration(sh1) < st_->filtration(sh2);
+ // Not using st_->filtration(sh1) because it uselessly tests for null_simplex.
+ if (sh1->second.filtration() != sh2->second.filtration()) {
+ return sh1->second.filtration() < sh2->second.filtration();
}
// is sh1 a proper subface of sh2
return st_->reverse_lexicographic_order(sh1, sh2);
@@ -925,7 +1063,7 @@ class Simplex_tree {
while (true) {
if (begin1->first == begin2->first) {
Filtration_value filt = (std::max)({begin1->second.filtration(), begin2->second.filtration(), filtration_});
- intersection.emplace_back(begin1->first, Node(NULL, filt));
+ intersection.emplace_back(begin1->first, Node(nullptr, filt));
if (++begin1 == end1 || ++begin2 == end2)
return; // ----->>
} else if (begin1->first < begin2->first) {
@@ -947,7 +1085,7 @@ class Simplex_tree {
* of the simplex, and fil is its filtration value. */
void print_hasse(std::ostream& os) {
os << num_simplices() << " " << std::endl;
- for (auto sh : filtration_simplex_range(Indexing_tag())) {
+ for (auto sh : filtration_simplex_range()) {
os << dimension(sh) << " ";
for (auto b_sh : boundary_simplex_range(sh)) {
os << key(b_sh) << " ";
diff --git a/src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h b/src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h
index 1f1a34cc..c49e30b9 100644
--- a/src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h
+++ b/src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h
@@ -39,62 +39,31 @@ namespace Gudhi {
* It stores explicitely its own filtration value and its own Simplex_key.
*/
template<class SimplexTree>
-class Simplex_tree_node_explicit_storage {
- public:
+struct Simplex_tree_node_explicit_storage : SimplexTree::Filtration_simplex_base, SimplexTree::Key_simplex_base {
typedef typename SimplexTree::Siblings Siblings;
typedef typename SimplexTree::Filtration_value Filtration_value;
typedef typename SimplexTree::Simplex_key Simplex_key;
- // Default constructor.
- Simplex_tree_node_explicit_storage()
- : children_(NULL),
- simplex_key_(-1),
- filtration_(0) {
- }
-
- Simplex_tree_node_explicit_storage(Siblings * sib,
- Filtration_value filtration)
- : children_(sib),
- simplex_key_(-1),
- filtration_(filtration) {
- }
-
- void assign_key(Simplex_key key) {
- simplex_key_ = key;
+ Simplex_tree_node_explicit_storage(Siblings * sib = nullptr,
+ Filtration_value filtration = 0)
+ : children_(sib) {
+ this->assign_filtration(filtration);
}
/*
- * Assign a children to the node
+ * Assign children to the node
*/
void assign_children(Siblings * children) {
children_ = children;
}
- /*
- *
- */
- void assign_filtration(double filtration_value) {
- filtration_ = filtration_value;
- }
-
- Filtration_value filtration() {
- return filtration_;
- }
/* Careful -> children_ can be NULL*/
Siblings * children() {
return children_;
}
- Simplex_key key() {
- return simplex_key_;
- }
-
private:
Siblings * children_;
-
- // Data attached to simplex, explicit storage
- Simplex_key simplex_key_;
- Filtration_value filtration_; // value in the filtration
};
/* @} */ // end addtogroup simplex_tree
diff --git a/src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_siblings.h b/src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_siblings.h
index de350f2d..d20a91d7 100644
--- a/src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_siblings.h
+++ b/src/Simplex_tree/include/gudhi/Simplex_tree/Simplex_tree_siblings.h
@@ -71,15 +71,15 @@ class Simplex_tree_siblings {
/* \brief Constructor with initialized set of members.
*
* 'members' must be sorted and unique.*/
- Simplex_tree_siblings(Simplex_tree_siblings * oncles, Vertex_handle parent,
- const std::vector<std::pair<Vertex_handle, Node> > & members)
+ template<typename RandomAccessVertexRange>
+ Simplex_tree_siblings(Simplex_tree_siblings * oncles, Vertex_handle parent, const RandomAccessVertexRange & members)
: oncles_(oncles),
parent_(parent),
members_(boost::container::ordered_unique_range, members.begin(),
members.end()) {
for (auto& map_el : members_) {
map_el.second.assign_children(this);
- }
+ }
}
/*
diff --git a/src/Simplex_tree/test/simplex_tree_unit_test.cpp b/src/Simplex_tree/test/simplex_tree_unit_test.cpp
index 9340aaa3..a4871cfd 100644
--- a/src/Simplex_tree/test/simplex_tree_unit_test.cpp
+++ b/src/Simplex_tree/test/simplex_tree_unit_test.cpp
@@ -9,8 +9,8 @@
#define BOOST_TEST_MODULE "simplex_tree"
#include <boost/test/unit_test.hpp>
-#include "gudhi/graph_simplicial_complex.h"
-#include "gudhi/reader_utils.h"
+// ^
+// /!\ Nothing else from Simplex_tree shall be included to test includes are well defined.
#include "gudhi/Simplex_tree.h"
using namespace Gudhi;
@@ -59,7 +59,6 @@ void test_iterators_on_empty_simplex_tree(typeST& tst) {
BOOST_AUTO_TEST_CASE(simplex_tree_when_empty) {
const Filtration_value DEFAULT_FILTRATION_VALUE = 0;
- // TEST OF DEFAULT CONSTRUCTOR
std::cout << "********************************************************************" << std::endl;
std::cout << "TEST OF DEFAULT CONSTRUCTOR" << std::endl;
typeST st;
@@ -126,6 +125,7 @@ void test_simplex_tree_contains(typeST& simplexTree, typeSimplex& simplex, int p
BOOST_CHECK(AreAlmostTheSame(simplexTree.filtration(*f_simplex), simplex.second));
int simplexIndex = simplex.first.size() - 1;
+ std::sort(simplex.first.begin(), simplex.first.end()); // if the simplex wasn't sorted, the next test could fail
for (auto vertex : simplexTree.simplex_vertex_range(*f_simplex)) {
std::cout << "test_simplex_tree_contains - vertex=" << vertex << "||" << simplex.first.at(simplexIndex) << std::endl;
BOOST_CHECK(vertex == simplex.first.at(simplexIndex));
@@ -170,22 +170,6 @@ void set_and_test_simplex_tree_dim_fil(typeST& simplexTree, int vectorSize, cons
BOOST_CHECK(simplexTree.num_simplices() == num_simp);
}
-void test_cofaces(typeST& st, std::vector<Vertex_handle> v, int dim, std::vector<typeST::Simplex_handle> res) {
- typeST::Cofaces_simplex_range cofaces;
- if (dim == 0)
- cofaces = st.star_simplex_range(st.find(v));
- else
- cofaces = st.cofaces_simplex_range(st.find(v), dim);
- for (auto simplex = cofaces.begin(); simplex != cofaces.end(); ++simplex) {
- typeST::Simplex_vertex_range rg = st.simplex_vertex_range(*simplex);
- for (auto vertex = rg.begin(); vertex != rg.end(); ++vertex) {
- std::cout << "(" << *vertex << ")";
- }
- std::cout << std::endl;
- BOOST_CHECK(std::find(res.begin(), res.end(), *simplex) != res.end());
- }
-}
-
BOOST_AUTO_TEST_CASE(simplex_tree_insertion) {
const Filtration_value FIRST_FILTRATION_VALUE = 0.1;
const Filtration_value SECOND_FILTRATION_VALUE = 0.2;
@@ -378,9 +362,8 @@ BOOST_AUTO_TEST_CASE(simplex_tree_insertion) {
bool sort_in_decr_order (Vertex_handle i,Vertex_handle j) { return (i>j); }
BOOST_AUTO_TEST_CASE(NSimplexAndSubfaces_tree_insertion) {
- // TEST OF INSERTION WITH SUBFACES
std::cout << "********************************************************************" << std::endl;
- std::cout << "TEST OF INSERTION WITH SUBFACES" << std::endl;
+ std::cout << "TEST OF RECURSIVE INSERTION" << std::endl;
typeST st;
typePairSimplexBool returnValue;
int position = 0;
@@ -569,114 +552,179 @@ BOOST_AUTO_TEST_CASE(NSimplexAndSubfaces_tree_insertion) {
}
std::cout << std::endl;
}
+}
+void test_cofaces(typeST& st, std::vector<Vertex_handle> expected, int dim, std::vector<typeST::Simplex_handle> res) {
+ typeST::Cofaces_simplex_range cofaces;
+ if (dim == 0)
+ cofaces = st.star_simplex_range(st.find(expected));
+ else
+ cofaces = st.cofaces_simplex_range(st.find(expected), dim);
+ for (auto simplex = cofaces.begin(); simplex != cofaces.end(); ++simplex) {
+ typeST::Simplex_vertex_range rg = st.simplex_vertex_range(*simplex);
+ for (auto vertex = rg.begin(); vertex != rg.end(); ++vertex) {
+ std::cout << "(" << *vertex << ")";
+ }
+ std::cout << std::endl;
+ BOOST_CHECK(std::find(res.begin(), res.end(), *simplex) != res.end());
+ }
+}
+
+BOOST_AUTO_TEST_CASE(coface_on_simplex_tree) {
std::cout << "********************************************************************" << std::endl;
- // TEST COFACE ALGORITHM
+ std::cout << "TEST COFACE ALGORITHM" << std::endl;
+ typeST st;
+
+ typeVectorVertex SimplexVector{2, 1, 0};
+ st.insert_simplex_and_subfaces(SimplexVector);
+
+ SimplexVector = {3, 0};
+ st.insert_simplex_and_subfaces(SimplexVector);
+
+ SimplexVector = {3, 4, 5};
+ st.insert_simplex_and_subfaces(SimplexVector);
+
+ SimplexVector = {0, 1, 6, 7};
+ st.insert_simplex_and_subfaces(SimplexVector);
+
+ /* Inserted simplex: */
+ /* 1 6 */
+ /* o---o */
+ /* /X\7/ */
+ /* o---o---o---o */
+ /* 2 0 3\X/4 */
+ /* o */
+ /* 5 */
+
+ // FIXME
st.set_dimension(3);
- std::cout << "COFACE ALGORITHM" << std::endl;
- std::vector<Vertex_handle> v;
- std::vector<Vertex_handle> simplex;
+
+ std::vector<Vertex_handle> simplex_result;
std::vector<typeST::Simplex_handle> result;
- v.push_back(3);
- std::cout << "First test : " << std::endl;
- std::cout << "Star of (3):" << std::endl;
-
- simplex.push_back(3);
- result.push_back(st.find(simplex));
- simplex.clear();
-
- simplex.push_back(3);
- simplex.push_back(0);
- result.push_back(st.find(simplex));
- simplex.clear();
-
- simplex.push_back(4);
- simplex.push_back(3);
- result.push_back(st.find(simplex));
- simplex.clear();
-
- simplex.push_back(5);
- simplex.push_back(4);
- simplex.push_back(3);
- result.push_back(st.find(simplex));
- simplex.clear();
-
- simplex.push_back(5);
- simplex.push_back(3);
- result.push_back(st.find(simplex));
- simplex.clear();
-
- test_cofaces(st, v, 0, result);
- v.clear();
+ std::cout << "First test - Star of (3):" << std::endl;
+
+ simplex_result = {3};
+ result.push_back(st.find(simplex_result));
+
+ simplex_result = {3, 0};
+ result.push_back(st.find(simplex_result));
+
+ simplex_result = {4, 3};
+ result.push_back(st.find(simplex_result));
+
+ simplex_result = {5, 4, 3};
+ result.push_back(st.find(simplex_result));
+
+ simplex_result = {5, 3};
+ result.push_back(st.find(simplex_result));
+ simplex_result.clear();
+
+ std::vector<Vertex_handle> vertex = {3};
+ test_cofaces(st, vertex, 0, result);
+ vertex.clear();
result.clear();
- v.push_back(1);
- v.push_back(7);
- std::cout << "Second test : " << std::endl;
- std::cout << "Star of (1,7): " << std::endl;
-
- simplex.push_back(7);
- simplex.push_back(1);
- result.push_back(st.find(simplex));
- simplex.clear();
-
- simplex.push_back(7);
- simplex.push_back(6);
- simplex.push_back(1);
- simplex.push_back(0);
- result.push_back(st.find(simplex));
- simplex.clear();
-
- simplex.push_back(7);
- simplex.push_back(1);
- simplex.push_back(0);
- result.push_back(st.find(simplex));
- simplex.clear();
-
- simplex.push_back(7);
- simplex.push_back(6);
- simplex.push_back(1);
- result.push_back(st.find(simplex));
- simplex.clear();
-
- test_cofaces(st, v, 0, result);
+ vertex.push_back(1);
+ vertex.push_back(7);
+ std::cout << "Second test - Star of (1,7): " << std::endl;
+
+ simplex_result = {7, 1};
+ result.push_back(st.find(simplex_result));
+
+ simplex_result = {7, 6, 1, 0};
+ result.push_back(st.find(simplex_result));
+
+ simplex_result = {7, 1, 0};
+ result.push_back(st.find(simplex_result));
+
+ simplex_result = {7, 6, 1};
+ result.push_back(st.find(simplex_result));
+
+ test_cofaces(st, vertex, 0, result);
result.clear();
- std::cout << "Third test : " << std::endl;
- std::cout << "2-dimension Cofaces of simplex(1,7) : " << std::endl;
+ std::cout << "Third test - 2-dimension Cofaces of simplex(1,7) : " << std::endl;
- simplex.push_back(7);
- simplex.push_back(1);
- simplex.push_back(0);
- result.push_back(st.find(simplex));
- simplex.clear();
+ simplex_result = {7, 1, 0};
+ result.push_back(st.find(simplex_result));
- simplex.push_back(7);
- simplex.push_back(6);
- simplex.push_back(1);
- result.push_back(st.find(simplex));
- simplex.clear();
+ simplex_result = {7, 6, 1};
+ result.push_back(st.find(simplex_result));
- test_cofaces(st, v, 1, result);
+ test_cofaces(st, vertex, 1, result);
result.clear();
std::cout << "Cofaces with a codimension too high (codimension + vetices > tree.dimension) :" << std::endl;
- test_cofaces(st, v, 5, result);
- // std::cout << "Cofaces with an empty codimension" << std::endl;
- // test_cofaces(st, v, -1, result);
+ test_cofaces(st, vertex, 5, result);
+
+ //std::cout << "Cofaces with an empty codimension" << std::endl;
+ //test_cofaces(st, vertex, -1, result);
// std::cout << "Cofaces in an empty simplex tree" << std::endl;
// typeST empty_tree;
- // test_cofaces(empty_tree, v, 1, result);
- // std::cout << "Cofaces of an empty simplex" << std::endl;
- // v.clear();
- // test_cofaces(st, v, 1, result);
-
- /*
- // TEST Off read
- std::cout << "********************************************************************" << std::endl;
- typeST st2;
- st2.tree_from_off("test.off");
- std::cout << st2;
- */
+ // test_cofaces(empty_tree, vertex, 1, result);
+ //std::cout << "Cofaces of an empty simplex" << std::endl;
+ //vertex.clear();
+ // test_cofaces(st, vertex, 1, result);
+
+}
+
+BOOST_AUTO_TEST_CASE(copy_move_on_simplex_tree) {
+ std::cout << "********************************************************************" << std::endl;
+ std::cout << "TEST COPY MOVE CONSTRUCTORS" << std::endl;
+ typeST st;
+
+ typeVectorVertex SimplexVector{2, 1, 0};
+ st.insert_simplex_and_subfaces(SimplexVector);
+ SimplexVector = {3, 0};
+ st.insert_simplex_and_subfaces(SimplexVector);
+
+ SimplexVector = {3, 4, 5};
+ st.insert_simplex_and_subfaces(SimplexVector);
+
+ SimplexVector = {0, 1, 6, 7};
+ st.insert_simplex_and_subfaces(SimplexVector);
+
+ /* Inserted simplex: */
+ /* 1 6 */
+ /* o---o */
+ /* /X\7/ */
+ /* o---o---o---o */
+ /* 2 0 3\X/4 */
+ /* o */
+ /* 5 */
+
+ // FIXME
+ st.set_dimension(3);
+
+ std::cout << "Printing st - address = " << &st << std::endl;
+
+ // Copy constructor
+ typeST st_copy = st;
+ std::cout << "Printing a copy of st - address = " << &st_copy << std::endl;
+
+ // Check the data are the same
+ BOOST_CHECK(st == st_copy);
+ // Check there is a new simplex tree reference
+ BOOST_CHECK(&st != &st_copy);
+
+ // Move constructor
+ typeST st_move = std::move(st);
+ std::cout << "Printing a move of st - address = " << &st_move << std::endl;
+
+ // Check the data are the same
+ BOOST_CHECK(st_move == st_copy);
+ // Check there is a new simplex tree reference
+ BOOST_CHECK(&st_move != &st_copy);
+ BOOST_CHECK(&st_move != &st);
+
+ typeST st_empty;
+ // Check st has been emptied by the move
+ BOOST_CHECK(st == st_empty);
+ BOOST_CHECK(st.filtration() == 0);
+ BOOST_CHECK(st.dimension() == -1);
+ BOOST_CHECK(st.num_simplices() == 0);
+ BOOST_CHECK(st.num_vertices() == (size_t)0);
+
+ std::cout << "Printing st once again- address = " << &st << std::endl;
}