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authorvrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb>2017-08-17 16:10:46 +0000
committervrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb>2017-08-17 16:10:46 +0000
commit2fc118133e76f05fc55d86cf32883223191fe473 (patch)
tree5570161d7082dffde9c96a02060330edf1be32b9 /src/cython/doc/fileformats.rst
parent5d8fad1814c3ec5f1d73e316853aba301070299f (diff)
Add file formats for Python.
Binding for persistence write files Launch py.test with the command "python -m pytest" (shall work everywhere) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2611 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9443a7eb5b580ece7708ff57949ad08339c1c5c3
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+File formats
+############
+
+To find the correct function to read the files, please refer to :doc:`reader_utils_ref`
+
+Persistence Diagram
+*******************
+
+Such a file, whose extension is usually ``.pers``, contains a list of persistence intervals.
+
+Lines starting with ``#`` are ignored (comments).
+
+Other lines might contain 2, 3 or 4 values (the number of values on each line must be the same for all lines)::
+
+ [[field] dimension] birth death
+
+Here is a simple sample file::
+
+ # Persistence diagram example
+ 2 2.7 3.7
+ 2 9.6 14.
+ # Some comments
+ 3 34.2 34.974
+ 4 3. inf
+
+Other sample files can be found in the data/persistence_diagram folder.
+
+Such files can be generated with :meth:`gudhi.SimplexTree.write_persistence_diagram` and read with
+:meth:`gudhi.read_persistence_intervals_grouped_by_dimension`, or
+:meth:`gudhi.read_persistence_intervals_in_dimension`.