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| author | vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2017-09-28 13:43:58 +0000 |
|---|---|---|
| committer | vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2017-09-28 13:43:58 +0000 |
| commit | ef61b085afd77976a2c7fc5dfa13bc4b293b4f95 (patch) | |
| tree | 99c82e4ec0681c6d13ea68bfcecb76516c2a54b1 /src/cython/doc/pyplots/diagram_persistence.py | |
| parent | 82fdc7d643e6ad589e16bc25782e8dd068d033ae (diff) | |
Remove python rips_complex construction from files as it can lead to errors with correlation matrix
Add examples for doxygen
Cythonization of rips correlation matrix
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@2727 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 8aae33839fa27f9d26897e625904671b2c05e0e7
Diffstat (limited to 'src/cython/doc/pyplots/diagram_persistence.py')
| -rwxr-xr-x | src/cython/doc/pyplots/diagram_persistence.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/src/cython/doc/pyplots/diagram_persistence.py b/src/cython/doc/pyplots/diagram_persistence.py index c2fbf801..ac20bf47 100755 --- a/src/cython/doc/pyplots/diagram_persistence.py +++ b/src/cython/doc/pyplots/diagram_persistence.py @@ -1,7 +1,8 @@ import gudhi -rips_complex = gudhi.RipsComplex(off_file=gudhi.__root_source_dir__ + \ - '/data/points/tore3D_1307.off', max_edge_length=0.2) +point_cloud = gudhi.read_off(off_file=gudhi.__root_source_dir__ + \ + '/data/points/tore3D_1307.off') +rips_complex = gudhi.RipsComplex(points=point_cloud, max_edge_length=0.2) simplex_tree = rips_complex.create_simplex_tree(max_dimension=3) diag = simplex_tree.persistence() plt = gudhi.plot_persistence_diagram(diag, band_boot=0.13) |