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| author | vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2017-09-28 13:43:58 +0000 |
|---|---|---|
| committer | vrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb> | 2017-09-28 13:43:58 +0000 |
| commit | ef61b085afd77976a2c7fc5dfa13bc4b293b4f95 (patch) | |
| tree | 99c82e4ec0681c6d13ea68bfcecb76516c2a54b1 /src/cython/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py | |
| parent | 82fdc7d643e6ad589e16bc25782e8dd068d033ae (diff) | |
Remove python rips_complex construction from files as it can lead to errors with correlation matrix
Add examples for doxygen
Cythonization of rips correlation matrix
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@2727 636b058d-ea47-450e-bf9e-a15bfbe3eedb
Former-commit-id: 8aae33839fa27f9d26897e625904671b2c05e0e7
Diffstat (limited to 'src/cython/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py')
| -rwxr-xr-x | src/cython/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/src/cython/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py b/src/cython/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py index 3baebd17..fa82a2f3 100755 --- a/src/cython/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py +++ b/src/cython/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py @@ -50,7 +50,8 @@ print("RipsComplex creation from distance matrix read in a csv file") message = "RipsComplex with max_edge_length=" + repr(args.max_edge_length) print(message) -rips_complex = gudhi.RipsComplex(csv_file=args.file, max_edge_length=args.max_edge_length) +distance_matrix = gudhi.read_lower_triangular_matrix_from_csv_file(csv_file=args.file) +rips_complex = gudhi.RipsComplex(distance_matrix=distance_matrix, max_edge_length=args.max_edge_length) simplex_tree = rips_complex.create_simplex_tree(max_dimension=args.max_dimension) message = "Number of simplices=" + repr(simplex_tree.num_simplices()) |