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| author | Vincent Rouvreau <10407034+VincentRouvreau@users.noreply.github.com> | 2019-11-28 10:01:12 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2019-11-28 10:01:12 +0100 |
| commit | 03efe417c85f5fb913cc0bc8dd2bd7173e8dd3f6 (patch) | |
| tree | 49875a6c73273e301d0c4e80ce9affba378bc9d0 /src | |
| parent | 71c1facc409f08f459c73e15c853782240e51d25 (diff) | |
| parent | dbb5183230e4b16bd36c5d582ef82e880741f149 (diff) | |
Merge pull request #160 from VincentRouvreau/persistence_graphical_tool_fix
Persistence graphical tool fix
Diffstat (limited to 'src')
| -rw-r--r-- | src/python/doc/persistence_graphical_tools_user.rst | 13 | ||||
| -rw-r--r-- | src/python/gudhi/persistence_graphical_tools.py | 5 |
2 files changed, 12 insertions, 6 deletions
diff --git a/src/python/doc/persistence_graphical_tools_user.rst b/src/python/doc/persistence_graphical_tools_user.rst index 2de99252..f41a926b 100644 --- a/src/python/doc/persistence_graphical_tools_user.rst +++ b/src/python/doc/persistence_graphical_tools_user.rst @@ -67,10 +67,17 @@ If you want more information on a specific dimension, for instance: import matplotlib.pyplot as plot import gudhi - # rips_on_tore3D_1307.pers obtained from write_persistence_diagram method persistence_file=gudhi.__root_source_dir__ + \ '/data/persistence_diagram/rips_on_tore3D_1307.pers' - gudhi.plot_persistence_density(persistence_file=persistence_file, - max_intervals=0, dimension=1, legend=True) + birth_death = gudhi.read_persistence_intervals_in_dimension( + persistence_file=persistence_file, + only_this_dim=1) + pers_diag = [(1, elt) for elt in birth_death] + # Use subplots to display diagram and density side by side + fig, axes = plot.subplots(nrows=1, ncols=2, figsize=(12, 5)) + gudhi.plot_persistence_diagram(persistence=pers_diag, + axes=axes[0]) + gudhi.plot_persistence_density(persistence=pers_diag, + dimension=1, legend=True, axes=axes[1]) plot.show() diff --git a/src/python/gudhi/persistence_graphical_tools.py b/src/python/gudhi/persistence_graphical_tools.py index c9dab323..7d232c85 100644 --- a/src/python/gudhi/persistence_graphical_tools.py +++ b/src/python/gudhi/persistence_graphical_tools.py @@ -369,7 +369,6 @@ def plot_persistence_density( persistence_dim = read_persistence_intervals_in_dimension( persistence_file=persistence_file, only_this_dim=dimension ) - print(persistence_dim) else: print("file " + persistence_file + " not found.") return None @@ -417,10 +416,10 @@ def plot_persistence_density( zi = k(np.vstack([xi.flatten(), yi.flatten()])) # Make the plot - axes.pcolormesh(xi, yi, zi.reshape(xi.shape), cmap=cmap) + img = axes.pcolormesh(xi, yi, zi.reshape(xi.shape), cmap=cmap) if legend: - axes.colorbar() + plt.colorbar(img, ax=axes) axes.set_xlabel("Birth") axes.set_ylabel("Death") |