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authorvrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb>2015-07-07 15:28:50 +0000
committervrouvrea <vrouvrea@636b058d-ea47-450e-bf9e-a15bfbe3eedb>2015-07-07 15:28:50 +0000
commit0cbab32353f334e0bdd5c9c520e6cc8ac9831947 (patch)
tree6b64be02fdb7d2e17b4d439e9fc5787b364aa79c /src
parent1652ab9a5092dcaa6fa41e72be4b43db7942f7f9 (diff)
parent76fa90a05998bd2015afb53f96e0512cd41826af (diff)
Merge of coface branch development (coface + star) into the trunk.
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@695 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bdb4dcc47a34b071e696da8486e0e33ce1af9823
Diffstat (limited to 'src')
-rw-r--r--src/Simplex_tree/include/gudhi/Simplex_tree.h265
-rw-r--r--src/Simplex_tree/test/simplex_tree_unit_test.cpp388
2 files changed, 442 insertions, 211 deletions
diff --git a/src/Simplex_tree/include/gudhi/Simplex_tree.h b/src/Simplex_tree/include/gudhi/Simplex_tree.h
index 9d0cf755..95a6d090 100644
--- a/src/Simplex_tree/include/gudhi/Simplex_tree.h
+++ b/src/Simplex_tree/include/gudhi/Simplex_tree.h
@@ -20,8 +20,8 @@
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
-#ifndef SRC_SIMPLEX_TREE_INCLUDE_GUDHI_SIMPLEX_TREE_H_
-#define SRC_SIMPLEX_TREE_INCLUDE_GUDHI_SIMPLEX_TREE_H_
+#ifndef SIMPLEX_TREE_H_
+#define SIMPLEX_TREE_H_
#include <gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h>
#include <gudhi/Simplex_tree/Simplex_tree_siblings.h>
@@ -35,9 +35,10 @@
#include <algorithm>
#include <utility>
#include <vector>
+#include <functional> // for greater<>
namespace Gudhi {
-
+
/** \defgroup simplex_tree Filtered Complexes
*
* A simplicial complex \f$\mathbf{K}\f$
@@ -72,6 +73,7 @@ namespace Gudhi {
* \copyright GNU General Public License v3.
* @{
*/
+
/**
* \brief Simplex Tree data structure for representing simplicial complexes.
*
@@ -84,9 +86,8 @@ namespace Gudhi {
*
*/
template<typename IndexingTag = linear_indexing_tag,
- typename FiltrationValue = double, typename SimplexKey = int // must be a signed integer type
- , typename VertexHandle = int // must be a signed integer type, int convertible to it
-// , bool ContiguousVertexHandles = true //true is Vertex_handles are exactly the set [0;n)
+typename FiltrationValue = double, typename SimplexKey = int // must be a signed integer type
+, typename VertexHandle = int // must be a signed integer type, int convertible to it
>
class Simplex_tree {
public:
@@ -122,7 +123,7 @@ class Simplex_tree {
public:
/** \brief Handle type to a simplex contained in the simplicial complex represented
- * byt he simplex tree. */
+ * by the simplex tree. */
typedef typename Dictionary::iterator Simplex_handle;
private:
@@ -156,6 +157,8 @@ class Simplex_tree {
typedef Simplex_tree_simplex_vertex_iterator<Simplex_tree> Simplex_vertex_iterator;
/** \brief Range over the vertices of a simplex. */
typedef boost::iterator_range<Simplex_vertex_iterator> Simplex_vertex_range;
+ /** \brief Range over the cofaces of a simplex. */
+ typedef std::vector<Simplex_handle> Cofaces_simplex_range;
/** \brief Iterator over the simplices of the boundary of a simplex.
*
* 'value_type' is Simplex_handle. */
@@ -187,13 +190,12 @@ class Simplex_tree {
/** \name Range and iterator methods
* @{ */
- /** \brief Returns a range over the vertices of the simplicial complex.
- *
+ /** \brief Returns a range over the vertices of the simplicial complex.
* The order is increasing according to < on Vertex_handles.*/
Complex_vertex_range complex_vertex_range() {
return Complex_vertex_range(
- boost::make_transform_iterator(root_.members_.begin(), return_first()),
- boost::make_transform_iterator(root_.members_.end(), return_first()));
+ boost::make_transform_iterator(root_.members_.begin(), return_first()),
+ boost::make_transform_iterator(root_.members_.end(), return_first()));
}
/** \brief Returns a range over the simplices of the simplicial complex.
@@ -245,6 +247,7 @@ class Simplex_tree {
Filtration_simplex_range filtration_simplex_range() {
return filtration_simplex_range(Indexing_tag());
}
+
/** \brief Returns a range over the vertices of a simplex.
*
* The order in which the vertices are visited is the decreasing order for < on Vertex_handles,
@@ -252,6 +255,7 @@ class Simplex_tree {
* equal to \f$(-1)^{\text{dim} \sigma}\f$ the canonical orientation on the simplex.
*/
Simplex_vertex_range simplex_vertex_range(Simplex_handle sh) {
+ assert(sh != null_simplex()); // Empty simplex
return Simplex_vertex_range(Simplex_vertex_iterator(this, sh),
Simplex_vertex_iterator(this));
}
@@ -282,12 +286,11 @@ class Simplex_tree {
/** \brief Constructs an empty simplex tree. */
Simplex_tree()
: null_vertex_(-1),
- threshold_(0),
- num_simplices_(0),
- root_(NULL, null_vertex_),
- filtration_vect_(),
- dimension_(-1) {
- }
+ threshold_(0),
+ num_simplices_(0),
+ root_(NULL, null_vertex_),
+ filtration_vect_(),
+ dimension_(-1) { }
/** \brief Destructor; deallocates the whole tree structure. */
~Simplex_tree() {
@@ -299,7 +302,7 @@ class Simplex_tree {
}
/** @} */ // end constructor/destructor
private:
- /** Recursive deletion. */
+ // Recursive deletion
void rec_delete(Siblings * sib) {
for (auto sh = sib->members().begin(); sh != sib->members().end(); ++sh) {
if (has_children(sh)) {
@@ -316,12 +319,14 @@ class Simplex_tree {
Simplex_key key(Simplex_handle sh) {
return sh->second.key();
}
+
/** \brief Returns the simplex associated to a key.
*
* The filtration must be initialized. */
Simplex_handle simplex(Simplex_key key) {
return filtration_vect_[key];
}
+
/** \brief Returns the filtration value of a simplex.
*
* Called on the null_simplex, returns INFINITY. */
@@ -330,12 +335,14 @@ class Simplex_tree {
return sh->second.filtration();
} else {
return INFINITY;
- } // filtration(); }
+ }
}
+
/** \brief Returns an upper bound of the filtration values of the simplices. */
Filtration_value filtration() const {
return threshold_;
}
+
/** \brief Returns a Simplex_handle different from all Simplex_handles
* associated to the simplices in the simplicial complex.
*
@@ -343,20 +350,24 @@ class Simplex_tree {
Simplex_handle null_simplex() const {
return Dictionary_it(NULL);
}
+
/** \brief Returns a key different for all keys associated to the
* simplices of the simplicial complex. */
Simplex_key null_key() const {
return -1;
}
+
/** \brief Returns a Vertex_handle different from all Vertex_handles associated
* to the vertices of the simplicial complex. */
Vertex_handle null_vertex() const {
return null_vertex_;
}
+
/** \brief Returns the number of vertices in the complex. */
size_t num_vertices() const {
return root_.members_.size();
}
+
/** \brief Returns the number of simplices in the complex.
*
* Does not count the empty simplex. */
@@ -376,6 +387,7 @@ class Simplex_tree {
}
return dim - 1;
}
+
/** \brief Returns an upper bound on the dimension of the simplicial complex. */
int dimension() const {
return dimension_;
@@ -387,6 +399,7 @@ class Simplex_tree {
return (sh->second.children()->parent() == sh->first);
}
+ public:
/** \brief Given a range of Vertex_handles, returns the Simplex_handle
* of the simplex in the simplicial complex containing the corresponding
* vertices. Return null_simplex() if the simplex is not in the complex.
@@ -397,8 +410,8 @@ class Simplex_tree {
*/
template<class RandomAccessVertexRange>
Simplex_handle find(RandomAccessVertexRange & s) {
- if (s.begin() == s.end())
- std::cerr << "Empty simplex \n";
+ if (s.begin() == s.end()) // Empty simplex
+ return null_simplex();
sort(s.begin(), s.end());
@@ -423,7 +436,7 @@ class Simplex_tree {
Simplex_handle find_vertex(Vertex_handle v) {
return root_.members_.begin() + v;
}
-//{ return root_.members_.find(v); }
+ //{ return root_.members_.find(v); }
/** \brief Insert a simplex, represented by a range of Vertex_handles, in the simplicial complex.
*
@@ -450,12 +463,12 @@ class Simplex_tree {
* .end() return random access iterators, with 'value_type' Vertex_handle. */
template<class RandomAccessVertexRange>
std::pair<Simplex_handle, bool> insert_simplex(RandomAccessVertexRange & simplex,
- Filtration_value filtration) {
+ Filtration_value filtration) {
if (simplex.empty()) {
return std::pair<Simplex_handle, bool>(null_simplex(), true);
}
-
- sort(simplex.begin(), simplex.end()); // must be sorted in increasing order
+ // must be sorted in increasing order
+ sort(simplex.begin(), simplex.end());
Siblings * curr_sib = &root_;
std::pair<Simplex_handle, bool> res_insert;
@@ -468,34 +481,36 @@ class Simplex_tree {
curr_sib = res_insert.first->second.children();
}
res_insert = curr_sib->members_.emplace(*vi, Node(curr_sib, filtration));
- if (!res_insert.second) { // if already in the complex
- if (res_insert.first->second.filtration() > filtration) { // if filtration value modified
+ if (!res_insert.second) {
+ // if already in the complex
+ if (res_insert.first->second.filtration() > filtration) {
+ // if filtration value modified
res_insert.first->second.assign_filtration(filtration);
return res_insert;
}
- return std::pair<Simplex_handle, bool>(null_simplex(), false); // if filtration value unchanged
+ // if filtration value unchanged
+ return std::pair<Simplex_handle, bool>(null_simplex(), false);
}
// otherwise the insertion has succeeded
return res_insert;
}
-
/** \brief Insert a N-simplex and all his subfaces, from a N-simplex represented by a range of
* Vertex_handles, in the simplicial complex.
*
* @param[in] Nsimplex range of Vertex_handles, representing the vertices of the new N-simplex
* @param[in] filtration the filtration value assigned to the new N-simplex.
- */
+ */
template<class RandomAccessVertexRange>
void insert_simplex_and_subfaces(RandomAccessVertexRange& Nsimplex,
- Filtration_value filtration = 0.0) {
+ Filtration_value filtration = 0.0) {
if (Nsimplex.size() > 1) {
for (unsigned int NIndex = 0; NIndex < Nsimplex.size(); NIndex++) {
// insert N (N-1)-Simplex
RandomAccessVertexRange NsimplexMinusOne;
for (unsigned int NListIter = 0; NListIter < Nsimplex.size() - 1; NListIter++) {
// (N-1)-Simplex creation
- NsimplexMinusOne.push_back( Nsimplex[(NIndex + NListIter) % Nsimplex.size()]);
+ NsimplexMinusOne.push_back(Nsimplex[(NIndex + NListIter) % Nsimplex.size()]);
}
// (N-1)-Simplex recursive call
insert_simplex_and_subfaces(NsimplexMinusOne, filtration);
@@ -528,8 +543,8 @@ class Simplex_tree {
* optimized version of the boundary computation. */
std::pair<Simplex_handle, Simplex_handle> endpoints(Simplex_handle sh) {
return std::pair<Simplex_handle, Simplex_handle>(
- root_.members_.find(sh->first),
- root_.members_.find(self_siblings(sh)->parent()));
+ root_.members_.find(sh->first),
+ root_.members_.find(self_siblings(sh)->parent()));
}
/** Returns the Siblings containing a simplex.*/
@@ -540,12 +555,12 @@ class Simplex_tree {
return sh->second.children();
}
-// void display_simplex(Simplex_handle sh)
-// {
-// std::cout << " " << "[" << filtration(sh) << "] ";
-// for( auto vertex : simplex_vertex_range(sh) )
-// { std::cout << vertex << " "; }
-// }
+ // void display_simplex(Simplex_handle sh)
+ // {
+ // std::cout << " " << "[" << filtration(sh) << "] ";
+ // for( auto vertex : simplex_vertex_range(sh) )
+ // { std::cout << vertex << " "; }
+ // }
// void print(Simplex_handle sh, std::ostream& os = std::cout)
// { for(auto v : simplex_vertex_range(sh)) {os << v << " ";}
@@ -557,15 +572,16 @@ class Simplex_tree {
return &root_;
}
- public:
/** Set an upper bound for the filtration values. */
void set_filtration(Filtration_value fil) {
threshold_ = fil;
}
+
/** Set a number of simplices for the simplicial complex. */
void set_num_simplices(unsigned int num_simplices) {
num_simplices_ = num_simplices;
}
+
/** Set a dimension for the simplicial complex. */
void set_dimension(int dimension) {
dimension_ = dimension;
@@ -591,7 +607,7 @@ class Simplex_tree {
filtration_vect_.clear();
filtration_vect_.reserve(num_simplices());
for (auto cpx_it = complex_simplex_range().begin();
- cpx_it != complex_simplex_range().end(); ++cpx_it) {
+ cpx_it != complex_simplex_range().end(); ++cpx_it) {
filtration_vect_.push_back(*cpx_it);
}
@@ -601,6 +617,92 @@ class Simplex_tree {
}
private:
+ /** Recursive search of cofaces
+ * This function uses DFS
+ *\param vertices contains a list of vertices, which represent the vertices of the simplex not found yet.
+ *\param curr_nbVertices represents the number of vertices of the simplex we reached by going through the tree.
+ *\param cofaces contains a list of Simplex_handle, representing all the cofaces asked.
+ *\param star true if we need the star of the simplex
+ *\param nbVertices number of vertices of the cofaces we search
+ * Prefix actions : When the bottom vertex matches with the current vertex in the tree, we remove the bottom vertex from vertices.
+ * Infix actions : Then we call or not the recursion.
+ * Postfix actions : Finally, we add back the removed vertex into vertices, and remove this vertex from curr_nbVertices so that we didn't change the parameters.
+ * If the vertices list is empty, we need to check if curr_nbVertices matches with the dimension of the cofaces asked.
+ */
+ void rec_coface(std::vector<Vertex_handle> &vertices, Siblings *curr_sib, int curr_nbVertices,
+ std::vector<Simplex_handle>& cofaces, bool star, int nbVertices) {
+ if (!(star || curr_nbVertices <= nbVertices)) // dimension of actual simplex <= nbVertices
+ return;
+ for (Simplex_handle simplex = curr_sib->members().begin(); simplex != curr_sib->members().end(); ++simplex) {
+ if (vertices.empty()) {
+ // If we reached the end of the vertices, and the simplex has more vertices than the given simplex
+ // => we found a coface
+
+ // Add a coface if we wan't the star or if the number of vertices of the current simplex matches with nbVertices
+ bool addCoface = (star || curr_nbVertices == nbVertices);
+ if (addCoface)
+ cofaces.push_back(simplex);
+ if ((!addCoface || star) && has_children(simplex)) // Rec call
+ rec_coface(vertices, simplex->second.children(), curr_nbVertices + 1, cofaces, star, nbVertices);
+ } else {
+ if (simplex->first == vertices.back()) {
+ // If curr_sib matches with the top vertex
+ bool equalDim = (star || curr_nbVertices == nbVertices); // dimension of actual simplex == nbVertices
+ bool addCoface = vertices.size() == 1 && equalDim;
+ if (addCoface)
+ cofaces.push_back(simplex);
+ if ((!addCoface || star) && has_children(simplex)) {
+ // Rec call
+ Vertex_handle tmp = vertices.back();
+ vertices.pop_back();
+ rec_coface(vertices, simplex->second.children(), curr_nbVertices + 1, cofaces, star, nbVertices);
+ vertices.push_back(tmp);
+ }
+ } else if (simplex->first > vertices.back()) {
+ return;
+ } else {
+ // (simplex->first < vertices.back()
+ if (has_children(simplex))
+ rec_coface(vertices, simplex->second.children(), curr_nbVertices + 1, cofaces, star, nbVertices);
+ }
+ }
+ }
+ }
+
+ public:
+ /** \brief Compute the star of a n simplex
+ * \param simplex represent the simplex of which we search the star
+ * \return Vector of Simplex_handle, empty vector if no cofaces found.
+ */
+
+ Cofaces_simplex_range star_simplex_range(const Simplex_handle simplex) {
+ return cofaces_simplex_range(simplex, 0);
+ }
+
+ /** \brief Compute the cofaces of a n simplex
+ * \param simplex represent the n-simplex of which we search the n+codimension cofaces
+ * \param codimension The function returns the n+codimension-cofaces of the n-simplex. If codimension = 0,
+ * return all cofaces (equivalent of star function)
+ * \return Vector of Simplex_handle, empty vector if no cofaces found.
+ */
+
+ Cofaces_simplex_range cofaces_simplex_range(const Simplex_handle simplex, int codimension) {
+ Cofaces_simplex_range cofaces;
+ // codimension must be positive or null integer
+ assert(codimension >= 0);
+ Simplex_vertex_range rg = simplex_vertex_range(simplex);
+ std::vector<Vertex_handle> copy(rg.begin(), rg.end());
+ if (codimension + static_cast<int>(copy.size()) > dimension_ + 1 ||
+ (codimension == 0 && static_cast<int>(copy.size()) > dimension_)) // n+codimension greater than dimension_
+ return cofaces;
+ // must be sorted in decreasing order
+ assert(std::is_sorted(copy.begin(), copy.end(), std::greater<Vertex_handle>()));
+ bool star = codimension == 0;
+ rec_coface(copy, &root_, 1, cofaces, star, codimension + static_cast<int>(copy.size()));
+ return cofaces;
+ }
+
+ private:
/** \brief Returns true iff the list of vertices of sh1
* is smaller than the list of vertices of sh2 w.r.t.
* lexicographic order on the lists read in reverse.
@@ -623,6 +725,7 @@ class Simplex_tree {
}
return ((it1 == rg1.end()) && (it2 != rg2.end()));
}
+
/** \brief StrictWeakOrdering, for the simplices, defined by the filtration.
*
* It corresponds to the partial order
@@ -631,15 +734,14 @@ class Simplex_tree {
* to be smaller. The filtration function must be monotonic. */
struct is_before_in_filtration {
explicit is_before_in_filtration(Simplex_tree * st)
- : st_(st) {
- }
+ : st_(st) { }
bool operator()(const Simplex_handle sh1, const Simplex_handle sh2) const {
if (st_->filtration(sh1) != st_->filtration(sh2)) {
return st_->filtration(sh1) < st_->filtration(sh2);
}
-
- return st_->reverse_lexicographic_order(sh1, sh2); // is sh1 a proper subface of sh2
+ // is sh1 a proper subface of sh2
+ return st_->reverse_lexicographic_order(sh1, sh2);
}
Simplex_tree * st_;
@@ -666,7 +768,8 @@ class Simplex_tree {
* must be undirected_tag. */
template<class OneSkeletonGraph>
void insert_graph(const OneSkeletonGraph& skel_graph) {
- assert(num_simplices() == 0); // the simplex tree must be empty
+ // the simplex tree must be empty
+ assert(num_simplices() == 0);
if (boost::num_vertices(skel_graph) == 0) {
return;
@@ -684,30 +787,32 @@ class Simplex_tree {
typename boost::graph_traits<OneSkeletonGraph>::vertex_iterator v_it,
v_it_end;
for (std::tie(v_it, v_it_end) = boost::vertices(skel_graph); v_it != v_it_end;
- ++v_it) {
+ ++v_it) {
root_.members_.emplace_hint(
- root_.members_.end(), *v_it,
- Node(&root_, boost::get(vertex_filtration_t(), skel_graph, *v_it)));
+ root_.members_.end(), *v_it,
+ Node(&root_, boost::get(vertex_filtration_t(), skel_graph, *v_it)));
}
typename boost::graph_traits<OneSkeletonGraph>::edge_iterator e_it,
e_it_end;
for (std::tie(e_it, e_it_end) = boost::edges(skel_graph); e_it != e_it_end;
- ++e_it) {
+ ++e_it) {
auto u = source(*e_it, skel_graph);
auto v = target(*e_it, skel_graph);
- if (u < v) { // count edges only once { std::swap(u,v); } // u < v
+ if (u < v) {
+ // count edges only once { std::swap(u,v); } // u < v
auto sh = find_vertex(u);
if (!has_children(sh)) {
sh->second.assign_children(new Siblings(&root_, sh->first));
}
sh->second.children()->members().emplace(
- v,
- Node(sh->second.children(),
- boost::get(edge_filtration_t(), skel_graph, *e_it)));
+ v,
+ Node(sh->second.children(),
+ boost::get(edge_filtration_t(), skel_graph, *e_it)));
}
}
}
+
/** \brief Expands the Simplex_tree containing only its one skeleton
* until dimension max_dim.
*
@@ -722,7 +827,7 @@ class Simplex_tree {
void expansion(int max_dim) {
dimension_ = max_dim;
for (Dictionary_it root_it = root_.members_.begin();
- root_it != root_.members_.end(); ++root_it) {
+ root_it != root_.members_.end(); ++root_it) {
if (has_children(root_it)) {
siblings_expansion(root_it->second.children(), max_dim - 1);
}
@@ -733,7 +838,7 @@ class Simplex_tree {
private:
/** \brief Recursive expansion of the simplex tree.*/
void siblings_expansion(Siblings * siblings, // must contain elements
- int k) {
+ int k) {
if (dimension_ > k) {
dimension_ = k;
}
@@ -744,31 +849,33 @@ class Simplex_tree {
static std::vector<std::pair<Vertex_handle, Node> > inter; // static, not thread-safe.
for (Dictionary_it s_h = siblings->members().begin();
- s_h != siblings->members().end(); ++s_h, ++next) {
+ s_h != siblings->members().end(); ++s_h, ++next) {
Simplex_handle root_sh = find_vertex(s_h->first);
if (has_children(root_sh)) {
intersection(
- inter, // output intersection
- next, // begin
- siblings->members().end(), // end
- root_sh->second.children()->members().begin(),
- root_sh->second.children()->members().end(),
- s_h->second.filtration());
+ inter, // output intersection
+ next, // begin
+ siblings->members().end(), // end
+ root_sh->second.children()->members().begin(),
+ root_sh->second.children()->members().end(),
+ s_h->second.filtration());
if (inter.size() != 0) {
this->num_simplices_ += inter.size();
Siblings * new_sib = new Siblings(siblings, // oncles
- s_h->first, // parent
- inter); // boost::container::ordered_unique_range_t
+ s_h->first, // parent
+ inter); // boost::container::ordered_unique_range_t
inter.clear();
s_h->second.assign_children(new_sib);
siblings_expansion(new_sib, k - 1);
} else {
- s_h->second.assign_children(siblings); // ensure the children property
+ // ensure the children property
+ s_h->second.assign_children(siblings);
inter.clear();
}
}
}
}
+
/** \brief Intersects Dictionary 1 [begin1;end1) with Dictionary 2 [begin2,end2)
* and assigns the maximal possible Filtration_value to the Nodes. */
static void intersection(std::vector<std::pair<Vertex_handle, Node> >& intersection,
@@ -779,10 +886,10 @@ class Simplex_tree {
return; // ----->>
while (true) {
if (begin1->first == begin2->first) {
- intersection.push_back(
- std::pair<Vertex_handle, Node>(
- begin1->first,
- Node(NULL, maximum(begin1->second.filtration(), begin2->second.filtration(), filtration))));
+ intersection.push_back(std::pair<Vertex_handle, Node>(begin1->first,
+ Node(NULL,
+ maximum(begin1->second.filtration(),
+ begin2->second.filtration(), filtration))));
++begin1;
++begin2;
if (begin1 == end1 || begin2 == end2)
@@ -800,6 +907,7 @@ class Simplex_tree {
}
}
}
+
/** Maximum over 3 values.*/
static Filtration_value maximum(Filtration_value a, Filtration_value b,
Filtration_value c) {
@@ -840,6 +948,7 @@ class Simplex_tree {
};
// Print a Simplex_tree in os.
+
template<typename T1, typename T2, typename T3>
std::ostream& operator<<(std::ostream & os, Simplex_tree<T1, T2, T3> & st) {
for (auto sh : st.filtration_simplex_range()) {
@@ -851,6 +960,7 @@ std::ostream& operator<<(std::ostream & os, Simplex_tree<T1, T2, T3> & st) {
}
return os;
}
+
template<typename T1, typename T2, typename T3>
std::istream& operator>>(std::istream & is, Simplex_tree<T1, T2, T3> & st) {
// assert(st.num_simplices() == 0);
@@ -860,16 +970,19 @@ std::istream& operator>>(std::istream & is, Simplex_tree<T1, T2, T3> & st) {
typename Simplex_tree<T1, T2, T3>::Filtration_value max_fil = 0;
int max_dim = -1;
size_t num_simplices = 0;
- while (read_simplex(is, simplex, fil)) { // read all simplices in the file as a list of vertices
+ while (read_simplex(is, simplex, fil)) {
+ // read all simplices in the file as a list of vertices
++num_simplices;
- int dim = static_cast<int>(simplex.size() - 1); // Warning : simplex_size needs to be casted in int - Can be 0
+ // Warning : simplex_size needs to be casted in int - Can be 0
+ int dim = static_cast<int> (simplex.size() - 1);
if (max_dim < dim) {
max_dim = dim;
}
if (max_fil < fil) {
max_fil = fil;
}
- st.insert_simplex(simplex, fil); // insert every simplex in the simplex tree
+ // insert every simplex in the simplex tree
+ st.insert_simplex(simplex, fil);
simplex.clear();
}
st.set_num_simplices(num_simplices);
@@ -878,8 +991,8 @@ std::istream& operator>>(std::istream & is, Simplex_tree<T1, T2, T3> & st) {
return is;
}
-
/** @} */ // end defgroup simplex_tree
+
} // namespace Gudhi
-#endif // SRC_SIMPLEX_TREE_INCLUDE_GUDHI_SIMPLEX_TREE_H_
+#endif // SIMPLEX_TREE_H_
diff --git a/src/Simplex_tree/test/simplex_tree_unit_test.cpp b/src/Simplex_tree/test/simplex_tree_unit_test.cpp
index 6b0a1f3d..7f2172a2 100644
--- a/src/Simplex_tree/test/simplex_tree_unit_test.cpp
+++ b/src/Simplex_tree/test/simplex_tree_unit_test.cpp
@@ -1,9 +1,11 @@
#define BOOST_TEST_MODULE simplex_tree test
#include <boost/test/included/unit_test.hpp>
+#include <boost/range/adaptor/reversed.hpp>
#include <boost/system/error_code.hpp>
#include <boost/chrono/thread_clock.hpp>
#include <iostream>
#include <string>
+#include <algorithm>
#include <utility> // std::pair, std::make_pair
@@ -21,7 +23,7 @@ typedef std::pair<typeST::Simplex_handle, bool> typePairSimplexBool;
typedef std::vector<Vertex_handle> typeVectorVertex;
typedef std::pair<typeVectorVertex, Filtration_value> typeSimplex;
-const Vertex_handle DEFAULT_VERTEX_HANDLE = (const Vertex_handle) -1;
+const Vertex_handle DEFAULT_VERTEX_HANDLE = (const Vertex_handle) - 1;
const Filtration_value DEFAULT_FILTRATION_VALUE = (const Filtration_value) 0.0;
void test_empty_simplex_tree(typeST& tst) {
@@ -40,25 +42,24 @@ void test_iterators_on_empty_simplex_tree(typeST& tst) {
std::cout << "Iterator on vertices: " << std::endl;
for (auto vertex : tst.complex_vertex_range()) {
std::cout << "vertice:" << vertex << std::endl;
- BOOST_CHECK(false); // shall be empty
+ BOOST_CHECK(false); // shall be empty
}
std::cout << "Iterator on simplices: " << std::endl;
for (auto simplex : tst.complex_simplex_range()) {
- BOOST_CHECK(simplex != simplex); // shall be empty - to remove warning of non-used simplex
+ BOOST_CHECK(simplex != simplex); // shall be empty - to remove warning of non-used simplex
}
std::cout
<< "Iterator on Simplices in the filtration, with [filtration value]:"
<< std::endl;
for (auto f_simplex : tst.filtration_simplex_range()) {
- BOOST_CHECK(false); // shall be empty
+ BOOST_CHECK(false); // shall be empty
std::cout << "test_iterators_on_empty_simplex_tree - filtration="
<< tst.filtration(f_simplex) << std::endl;
}
}
-BOOST_AUTO_TEST_CASE( simplex_tree_when_empty )
-{
+BOOST_AUTO_TEST_CASE(simplex_tree_when_empty) {
const Filtration_value DEFAULT_FILTRATION_VALUE = 0;
// TEST OF DEFAULT CONSTRUCTOR
@@ -66,29 +67,28 @@ BOOST_AUTO_TEST_CASE( simplex_tree_when_empty )
std::cout << "TEST OF DEFAULT CONSTRUCTOR" << std::endl;
typeST st;
- test_empty_simplex_tree (st);
+ test_empty_simplex_tree(st);
- test_iterators_on_empty_simplex_tree (st);
+ test_iterators_on_empty_simplex_tree(st);
// TEST OF EMPTY INSERTION
std::cout << "TEST OF EMPTY INSERTION" << std::endl;
typeVectorVertex simplexVectorEmpty;
BOOST_CHECK(simplexVectorEmpty.empty() == true);
typePairSimplexBool returnEmptyValue = st.insert_simplex(simplexVectorEmpty,
- DEFAULT_FILTRATION_VALUE);
+ DEFAULT_FILTRATION_VALUE);
BOOST_CHECK(returnEmptyValue.first == typeST::Simplex_handle(NULL));
BOOST_CHECK(returnEmptyValue.second == true);
- test_empty_simplex_tree (st);
+ test_empty_simplex_tree(st);
- test_iterators_on_empty_simplex_tree (st);
+ test_iterators_on_empty_simplex_tree(st);
}
bool AreAlmostTheSame(float a, float b) {
return std::fabs(a - b) < std::numeric_limits<float>::epsilon();
}
-BOOST_AUTO_TEST_CASE( simplex_tree_from_file )
-{
+BOOST_AUTO_TEST_CASE(simplex_tree_from_file) {
// TEST OF INSERTION
std::cout << "********************************************************************" << std::endl;
std::cout << "TEST OF SIMPLEX TREE FROM A FILE" << std::endl;
@@ -108,16 +108,14 @@ BOOST_AUTO_TEST_CASE( simplex_tree_from_file )
BOOST_CHECK(st.filtration() == 0.4);
int previous_size = 0;
- for( auto f_simplex : st.filtration_simplex_range() )
- {
+ for (auto f_simplex : st.filtration_simplex_range()) {
// Size of simplex
int size = 0;
- for( auto vertex : st.simplex_vertex_range(f_simplex) )
- {
+ for (auto vertex : st.simplex_vertex_range(f_simplex)) {
size++;
}
- BOOST_CHECK(AreAlmostTheSame(st.filtration(f_simplex),(0.1* size))); // Specific test: filtration = 0.1 * simplex_size
- BOOST_CHECK(previous_size <= size);// Check list is sorted (because of sorted filtrations in simplex_tree.txt)
+ BOOST_CHECK(AreAlmostTheSame(st.filtration(f_simplex), (0.1 * size))); // Specific test: filtration = 0.1 * simplex_size
+ BOOST_CHECK(previous_size <= size); // Check list is sorted (because of sorted filtrations in simplex_tree.txt)
previous_size = size;
}
simplex_tree_stream.close();
@@ -127,13 +125,12 @@ void test_simplex_tree_contains(typeST& simplexTree, typeSimplex& simplex, int p
auto f_simplex = simplexTree.filtration_simplex_range().begin() + pos;
std::cout << "test_simplex_tree_contains - filtration=" << simplexTree.filtration(*f_simplex) << "||" << simplex.second << std::endl;
- BOOST_CHECK( AreAlmostTheSame(simplexTree.filtration(*f_simplex),simplex.second) );
+ BOOST_CHECK(AreAlmostTheSame(simplexTree.filtration(*f_simplex), simplex.second));
- int simplexIndex=simplex.first.size()-1;
- for( auto vertex : simplexTree.simplex_vertex_range(*f_simplex) )
- {
+ int simplexIndex = simplex.first.size() - 1;
+ for (auto vertex : simplexTree.simplex_vertex_range(*f_simplex)) {
std::cout << "test_simplex_tree_contains - vertex=" << vertex << "||" << simplex.first.at(simplexIndex) << std::endl;
- BOOST_CHECK(vertex == simplex.first.at(simplexIndex));
+ BOOST_CHECK(vertex == simplex.first.at(simplexIndex));
BOOST_CHECK(simplexIndex >= 0);
simplexIndex--;
}
@@ -141,7 +138,7 @@ void test_simplex_tree_contains(typeST& simplexTree, typeSimplex& simplex, int p
void test_simplex_tree_insert_returns_true(const typePairSimplexBool& returnValue) {
BOOST_CHECK(returnValue.second == true);
- typeST::Simplex_handle shReturned = returnValue.first; // Simplex_handle = boost::container::flat_map< Vertex_handle, Node >::iterator
+ typeST::Simplex_handle shReturned = returnValue.first; // Simplex_handle = boost::container::flat_map< Vertex_handle, Node >::iterator
BOOST_CHECK(shReturned != typeST::Simplex_handle(NULL));
}
@@ -170,8 +167,23 @@ void set_and_test_simplex_tree_dim_fil(typeST& simplexTree, int vectorSize, cons
BOOST_CHECK(simplexTree.num_simplices() == nb_simplices);
}
-BOOST_AUTO_TEST_CASE( simplex_tree_insertion )
-{
+void test_cofaces(typeST& st, std::vector<Vertex_handle> v, int dim, std::vector<typeST::Simplex_handle> res) {
+ typeST::Cofaces_simplex_range cofaces;
+ if (dim == 0)
+ cofaces = st.star_simplex_range(st.find(v));
+ else
+ cofaces = st.cofaces_simplex_range(st.find(v), dim);
+ for (auto simplex = cofaces.begin(); simplex != cofaces.end(); ++simplex) {
+ typeST::Simplex_vertex_range rg = st.simplex_vertex_range(*simplex);
+ for (auto vertex = rg.begin(); vertex != rg.end(); ++vertex) {
+ std::cout << "(" << *vertex << ")";
+ }
+ std::cout << std::endl;
+ BOOST_CHECK(std::find(res.begin(), res.end(), *simplex) != res.end());
+ }
+}
+
+BOOST_AUTO_TEST_CASE(simplex_tree_insertion) {
const Filtration_value FIRST_FILTRATION_VALUE = 0.1;
const Filtration_value SECOND_FILTRATION_VALUE = 0.2;
const Filtration_value THIRD_FILTRATION_VALUE = 0.3;
@@ -190,88 +202,88 @@ BOOST_AUTO_TEST_CASE( simplex_tree_insertion )
std::cout << " - INSERT 0" << std::endl;
typeVectorVertex firstSimplexVector;
firstSimplexVector.push_back(FIRST_VERTEX_HANDLE);
- BOOST_CHECK( firstSimplexVector.size() == 1 );
+ BOOST_CHECK(firstSimplexVector.size() == 1);
typeSimplex firstSimplex = std::make_pair(
- firstSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
+ firstSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
typePairSimplexBool returnValue = st.insert_simplex(firstSimplex.first,
- firstSimplex.second);
+ firstSimplex.second);
- test_simplex_tree_insert_returns_true (returnValue);
+ test_simplex_tree_insert_returns_true(returnValue);
set_and_test_simplex_tree_dim_fil(st, firstSimplexVector.size(), firstSimplex.second);
- BOOST_CHECK( st.num_vertices() == (size_t)1 );
+ BOOST_CHECK(st.num_vertices() == (size_t) 1);
// ++ SECOND
std::cout << " - INSERT 1" << std::endl;
typeVectorVertex secondSimplexVector;
secondSimplexVector.push_back(SECOND_VERTEX_HANDLE);
- BOOST_CHECK( secondSimplexVector.size() == 1 );
+ BOOST_CHECK(secondSimplexVector.size() == 1);
typeSimplex secondSimplex = std::make_pair(
- secondSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
+ secondSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
returnValue =
- st.insert_simplex ( secondSimplex.first, secondSimplex.second );
+ st.insert_simplex(secondSimplex.first, secondSimplex.second);
- test_simplex_tree_insert_returns_true (returnValue);
+ test_simplex_tree_insert_returns_true(returnValue);
set_and_test_simplex_tree_dim_fil(st, secondSimplexVector.size(), secondSimplex.second);
- BOOST_CHECK( st.num_vertices() == (size_t)2 );
+ BOOST_CHECK(st.num_vertices() == (size_t) 2);
// ++ THIRD
std::cout << " - INSERT (0,1)" << std::endl;
typeVectorVertex thirdSimplexVector;
thirdSimplexVector.push_back(FIRST_VERTEX_HANDLE);
thirdSimplexVector.push_back(SECOND_VERTEX_HANDLE);
- BOOST_CHECK( thirdSimplexVector.size() == 2 );
+ BOOST_CHECK(thirdSimplexVector.size() == 2);
typeSimplex thirdSimplex = std::make_pair(
- thirdSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
+ thirdSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
returnValue =
- st.insert_simplex ( thirdSimplex.first, thirdSimplex.second );
+ st.insert_simplex(thirdSimplex.first, thirdSimplex.second);
- test_simplex_tree_insert_returns_true (returnValue);
+ test_simplex_tree_insert_returns_true(returnValue);
set_and_test_simplex_tree_dim_fil(st, thirdSimplexVector.size(), thirdSimplex.second);
- BOOST_CHECK( st.num_vertices() == (size_t)2 ); // Not incremented !!
+ BOOST_CHECK(st.num_vertices() == (size_t) 2); // Not incremented !!
// ++ FOURTH
std::cout << " - INSERT 2" << std::endl;
typeVectorVertex fourthSimplexVector;
fourthSimplexVector.push_back(THIRD_VERTEX_HANDLE);
- BOOST_CHECK( fourthSimplexVector.size() == 1 );
+ BOOST_CHECK(fourthSimplexVector.size() == 1);
typeSimplex fourthSimplex = std::make_pair(
- fourthSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
+ fourthSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
returnValue =
- st.insert_simplex ( fourthSimplex.first, fourthSimplex.second );
+ st.insert_simplex(fourthSimplex.first, fourthSimplex.second);
- test_simplex_tree_insert_returns_true (returnValue);
+ test_simplex_tree_insert_returns_true(returnValue);
set_and_test_simplex_tree_dim_fil(st, fourthSimplexVector.size(), fourthSimplex.second);
- BOOST_CHECK( st.num_vertices() == (size_t)3 );
+ BOOST_CHECK(st.num_vertices() == (size_t) 3);
// ++ FIFTH
std::cout << " - INSERT (2,0)" << std::endl;
typeVectorVertex fifthSimplexVector;
fifthSimplexVector.push_back(THIRD_VERTEX_HANDLE);
fifthSimplexVector.push_back(FIRST_VERTEX_HANDLE);
- BOOST_CHECK( fifthSimplexVector.size() == 2 );
+ BOOST_CHECK(fifthSimplexVector.size() == 2);
typeSimplex fifthSimplex = std::make_pair(
- fifthSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
+ fifthSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
returnValue =
- st.insert_simplex ( fifthSimplex.first, fifthSimplex.second );
+ st.insert_simplex(fifthSimplex.first, fifthSimplex.second);
- test_simplex_tree_insert_returns_true (returnValue);
+ test_simplex_tree_insert_returns_true(returnValue);
set_and_test_simplex_tree_dim_fil(st, fifthSimplexVector.size(), fifthSimplex.second);
- BOOST_CHECK( st.num_vertices() == (size_t)3 ); // Not incremented !!
+ BOOST_CHECK(st.num_vertices() == (size_t) 3); // Not incremented !!
// ++ SIXTH
std::cout << " - INSERT (2,1)" << std::endl;
typeVectorVertex sixthSimplexVector;
sixthSimplexVector.push_back(THIRD_VERTEX_HANDLE);
sixthSimplexVector.push_back(SECOND_VERTEX_HANDLE);
- BOOST_CHECK( sixthSimplexVector.size() == 2 );
+ BOOST_CHECK(sixthSimplexVector.size() == 2);
typeSimplex sixthSimplex = std::make_pair(
- sixthSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
+ sixthSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
returnValue =
- st.insert_simplex ( sixthSimplex.first, sixthSimplex.second );
+ st.insert_simplex(sixthSimplex.first, sixthSimplex.second);
- test_simplex_tree_insert_returns_true (returnValue);
+ test_simplex_tree_insert_returns_true(returnValue);
set_and_test_simplex_tree_dim_fil(st, sixthSimplexVector.size(), sixthSimplex.second);
- BOOST_CHECK( st.num_vertices() == (size_t)3 ); // Not incremented !!
+ BOOST_CHECK(st.num_vertices() == (size_t) 3); // Not incremented !!
// ++ SEVENTH
std::cout << " - INSERT (2,1,0)" << std::endl;
@@ -279,61 +291,61 @@ BOOST_AUTO_TEST_CASE( simplex_tree_insertion )
seventhSimplexVector.push_back(THIRD_VERTEX_HANDLE);
seventhSimplexVector.push_back(SECOND_VERTEX_HANDLE);
seventhSimplexVector.push_back(FIRST_VERTEX_HANDLE);
- BOOST_CHECK( seventhSimplexVector.size() == 3 );
+ BOOST_CHECK(seventhSimplexVector.size() == 3);
typeSimplex seventhSimplex = std::make_pair(
- seventhSimplexVector, Filtration_value(THIRD_FILTRATION_VALUE));
+ seventhSimplexVector, Filtration_value(THIRD_FILTRATION_VALUE));
returnValue =
- st.insert_simplex ( seventhSimplex.first, seventhSimplex.second );
+ st.insert_simplex(seventhSimplex.first, seventhSimplex.second);
- test_simplex_tree_insert_returns_true (returnValue);
+ test_simplex_tree_insert_returns_true(returnValue);
set_and_test_simplex_tree_dim_fil(st, seventhSimplexVector.size(), seventhSimplex.second);
- BOOST_CHECK( st.num_vertices() == (size_t)3 ); // Not incremented !!
+ BOOST_CHECK(st.num_vertices() == (size_t) 3); // Not incremented !!
// ++ EIGHTH
std::cout << " - INSERT 3" << std::endl;
typeVectorVertex eighthSimplexVector;
eighthSimplexVector.push_back(FOURTH_VERTEX_HANDLE);
- BOOST_CHECK( eighthSimplexVector.size() == 1 );
+ BOOST_CHECK(eighthSimplexVector.size() == 1);
typeSimplex eighthSimplex = std::make_pair(
- eighthSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
+ eighthSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
returnValue =
- st.insert_simplex ( eighthSimplex.first, eighthSimplex.second );
+ st.insert_simplex(eighthSimplex.first, eighthSimplex.second);
- test_simplex_tree_insert_returns_true (returnValue);
+ test_simplex_tree_insert_returns_true(returnValue);
set_and_test_simplex_tree_dim_fil(st, eighthSimplexVector.size(), eighthSimplex.second);
- BOOST_CHECK( st.num_vertices() == (size_t)4 );
+ BOOST_CHECK(st.num_vertices() == (size_t) 4);
// ++ NINETH
std::cout << " - INSERT (3,0)" << std::endl;
typeVectorVertex ninethSimplexVector;
ninethSimplexVector.push_back(FOURTH_VERTEX_HANDLE);
ninethSimplexVector.push_back(FIRST_VERTEX_HANDLE);
- BOOST_CHECK( ninethSimplexVector.size() == 2 );
+ BOOST_CHECK(ninethSimplexVector.size() == 2);
typeSimplex ninethSimplex = std::make_pair(
- ninethSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
+ ninethSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
returnValue =
- st.insert_simplex ( ninethSimplex.first, ninethSimplex.second );
+ st.insert_simplex(ninethSimplex.first, ninethSimplex.second);
- test_simplex_tree_insert_returns_true (returnValue);
+ test_simplex_tree_insert_returns_true(returnValue);
set_and_test_simplex_tree_dim_fil(st, ninethSimplexVector.size(), ninethSimplex.second);
- BOOST_CHECK( st.num_vertices() == (size_t)4 ); // Not incremented !!
+ BOOST_CHECK(st.num_vertices() == (size_t) 4); // Not incremented !!
// ++ TENTH
std::cout << " - INSERT 0 (already inserted)" << std::endl;
typeVectorVertex tenthSimplexVector;
tenthSimplexVector.push_back(FIRST_VERTEX_HANDLE);
- BOOST_CHECK( tenthSimplexVector.size() == 1 );
+ BOOST_CHECK(tenthSimplexVector.size() == 1);
typeSimplex tenthSimplex = std::make_pair(
- tenthSimplexVector, Filtration_value(FOURTH_FILTRATION_VALUE)); // With a different filtration value
+ tenthSimplexVector, Filtration_value(FOURTH_FILTRATION_VALUE)); // With a different filtration value
returnValue =
- st.insert_simplex ( tenthSimplex.first, tenthSimplex.second );
+ st.insert_simplex(tenthSimplex.first, tenthSimplex.second);
BOOST_CHECK(returnValue.second == false);
- typeST::Simplex_handle shReturned = returnValue.first; // Simplex_handle = boost::container::flat_map< Vertex_handle, Node >::iterator
+ typeST::Simplex_handle shReturned = returnValue.first; // Simplex_handle = boost::container::flat_map< Vertex_handle, Node >::iterator
BOOST_CHECK(shReturned == typeST::Simplex_handle(NULL));
- BOOST_CHECK( st.num_vertices() == (size_t)4 ); // Not incremented !!
- BOOST_CHECK( st.dimension() == dim_max );
- BOOST_CHECK( AreAlmostTheSame(st.filtration(), max_fil) );
+ BOOST_CHECK(st.num_vertices() == (size_t) 4); // Not incremented !!
+ BOOST_CHECK(st.dimension() == dim_max);
+ BOOST_CHECK(AreAlmostTheSame(st.filtration(), max_fil));
// ++ ELEVENTH
std::cout << " - INSERT (2,1,0) (already inserted)" << std::endl;
@@ -341,18 +353,18 @@ BOOST_AUTO_TEST_CASE( simplex_tree_insertion )
eleventhSimplexVector.push_back(THIRD_VERTEX_HANDLE);
eleventhSimplexVector.push_back(SECOND_VERTEX_HANDLE);
eleventhSimplexVector.push_back(FIRST_VERTEX_HANDLE);
- BOOST_CHECK( eleventhSimplexVector.size() == 3 );
+ BOOST_CHECK(eleventhSimplexVector.size() == 3);
typeSimplex eleventhSimplex = std::make_pair(
- eleventhSimplexVector, Filtration_value(FOURTH_FILTRATION_VALUE));
+ eleventhSimplexVector, Filtration_value(FOURTH_FILTRATION_VALUE));
returnValue =
- st.insert_simplex ( eleventhSimplex.first, eleventhSimplex.second );
+ st.insert_simplex(eleventhSimplex.first, eleventhSimplex.second);
BOOST_CHECK(returnValue.second == false);
- shReturned = returnValue.first; // Simplex_handle = boost::container::flat_map< Vertex_handle, Node >::iterator
+ shReturned = returnValue.first; // Simplex_handle = boost::container::flat_map< Vertex_handle, Node >::iterator
BOOST_CHECK(shReturned == typeST::Simplex_handle(NULL));
- BOOST_CHECK( st.num_vertices() == (size_t)4 );// Not incremented !!
- BOOST_CHECK( st.dimension() == dim_max );
- BOOST_CHECK( AreAlmostTheSame(st.filtration(), max_fil) );
+ BOOST_CHECK(st.num_vertices() == (size_t) 4); // Not incremented !!
+ BOOST_CHECK(st.dimension() == dim_max);
+ BOOST_CHECK(AreAlmostTheSame(st.filtration(), max_fil));
/* Inserted simplex: */
/* 1 */
@@ -372,43 +384,40 @@ BOOST_AUTO_TEST_CASE( simplex_tree_insertion )
// [0.3] 2 1 0
// !! Be careful, simplex are sorted by filtration value on insertion !!
std::cout << "simplex_tree_insertion - first - 0" << std::endl;
- test_simplex_tree_contains(st, firstSimplex, 0);// (0) -> 0
+ test_simplex_tree_contains(st, firstSimplex, 0); // (0) -> 0
std::cout << "simplex_tree_insertion - second - 1" << std::endl;
- test_simplex_tree_contains(st, secondSimplex, 1);// (1) -> 1
+ test_simplex_tree_contains(st, secondSimplex, 1); // (1) -> 1
std::cout << "simplex_tree_insertion - third - 4" << std::endl;
- test_simplex_tree_contains(st, thirdSimplex, 4);// (0,1) -> 4
+ test_simplex_tree_contains(st, thirdSimplex, 4); // (0,1) -> 4
std::cout << "simplex_tree_insertion - fourth - 2" << std::endl;
- test_simplex_tree_contains(st, fourthSimplex, 2);// (2) -> 2
+ test_simplex_tree_contains(st, fourthSimplex, 2); // (2) -> 2
std::cout << "simplex_tree_insertion - fifth - 5" << std::endl;
- test_simplex_tree_contains(st, fifthSimplex, 5);// (2,0) -> 5
+ test_simplex_tree_contains(st, fifthSimplex, 5); // (2,0) -> 5
std::cout << "simplex_tree_insertion - sixth - 6" << std::endl;
- test_simplex_tree_contains(st, sixthSimplex, 6);//(2,1) -> 6
+ test_simplex_tree_contains(st, sixthSimplex, 6); //(2,1) -> 6
std::cout << "simplex_tree_insertion - seventh - 8" << std::endl;
- test_simplex_tree_contains(st, seventhSimplex, 8);// (2,1,0) -> 8
+ test_simplex_tree_contains(st, seventhSimplex, 8); // (2,1,0) -> 8
std::cout << "simplex_tree_insertion - eighth - 3" << std::endl;
- test_simplex_tree_contains(st, eighthSimplex, 3);// (3) -> 3
+ test_simplex_tree_contains(st, eighthSimplex, 3); // (3) -> 3
std::cout << "simplex_tree_insertion - nineth - 7" << std::endl;
- test_simplex_tree_contains(st, ninethSimplex, 7);// (3,0) -> 7
+ test_simplex_tree_contains(st, ninethSimplex, 7); // (3,0) -> 7
// Display the Simplex_tree - Can not be done in the middle of 2 inserts
std::cout << "The complex contains " << st.num_simplices() << " simplices" << std::endl;
std::cout << " - dimension " << st.dimension() << " - filtration " << st.filtration() << std::endl;
std::cout << std::endl << std::endl << "Iterator on Simplices in the filtration, with [filtration value]:" << std::endl;
- for( auto f_simplex : st.filtration_simplex_range() )
- {
+ for (auto f_simplex : st.filtration_simplex_range()) {
std::cout << " " << "[" << st.filtration(f_simplex) << "] ";
- for( auto vertex : st.simplex_vertex_range(f_simplex) )
- {
- std::cout << (int)vertex << " ";
+ for (auto vertex : st.simplex_vertex_range(f_simplex)) {
+ std::cout << (int) vertex << " ";
}
std::cout << std::endl;
}
}
-BOOST_AUTO_TEST_CASE( NSimplexAndSubfaces_tree_insertion )
-{
- Vertex_handle FIRST_VERTEX_HANDLE = (Vertex_handle)0;
+BOOST_AUTO_TEST_CASE(NSimplexAndSubfaces_tree_insertion) {
+ Vertex_handle FIRST_VERTEX_HANDLE = (Vertex_handle) 0;
Vertex_handle SECOND_VERTEX_HANDLE = (Vertex_handle) 1;
Vertex_handle THIRD_VERTEX_HANDLE = (Vertex_handle) 2;
Vertex_handle FOURTH_VERTEX_HANDLE = (Vertex_handle) 3;
@@ -428,39 +437,39 @@ BOOST_AUTO_TEST_CASE( NSimplexAndSubfaces_tree_insertion )
SimplexVector1.push_back(THIRD_VERTEX_HANDLE);
SimplexVector1.push_back(SECOND_VERTEX_HANDLE);
SimplexVector1.push_back(FIRST_VERTEX_HANDLE);
- BOOST_CHECK( SimplexVector1.size() == 3 );
- st.insert_simplex_and_subfaces ( SimplexVector1 );
+ BOOST_CHECK(SimplexVector1.size() == 3);
+ st.insert_simplex_and_subfaces(SimplexVector1);
- BOOST_CHECK( st.num_vertices() == (size_t)3 ); // +3 (2, 1 and 0 are not existing)
+ BOOST_CHECK(st.num_vertices() == (size_t) 3); // +3 (2, 1 and 0 are not existing)
// ++ SECOND
std::cout << " - INSERT 3" << std::endl;
typeVectorVertex SimplexVector2;
SimplexVector2.push_back(FOURTH_VERTEX_HANDLE);
- BOOST_CHECK( SimplexVector2.size() == 1 );
- st.insert_simplex_and_subfaces ( SimplexVector2 );
+ BOOST_CHECK(SimplexVector2.size() == 1);
+ st.insert_simplex_and_subfaces(SimplexVector2);
- BOOST_CHECK( st.num_vertices() == (size_t)4 ); // +1 (3 is not existing)
+ BOOST_CHECK(st.num_vertices() == (size_t) 4); // +1 (3 is not existing)
// ++ THIRD
std::cout << " - INSERT (0,3)" << std::endl;
typeVectorVertex SimplexVector3;
SimplexVector3.push_back(FOURTH_VERTEX_HANDLE);
SimplexVector3.push_back(FIRST_VERTEX_HANDLE);
- BOOST_CHECK( SimplexVector3.size() == 2 );
- st.insert_simplex_and_subfaces ( SimplexVector3 );
+ BOOST_CHECK(SimplexVector3.size() == 2);
+ st.insert_simplex_and_subfaces(SimplexVector3);
- BOOST_CHECK( st.num_vertices() == (size_t)4 ); // Not incremented (all are existing)
+ BOOST_CHECK(st.num_vertices() == (size_t) 4); // Not incremented (all are existing)
// ++ FOURTH
std::cout << " - INSERT (1,0) (already inserted)" << std::endl;
typeVectorVertex SimplexVector4;
SimplexVector4.push_back(SECOND_VERTEX_HANDLE);
SimplexVector4.push_back(FIRST_VERTEX_HANDLE);
- BOOST_CHECK( SimplexVector4.size() == 2 );
- st.insert_simplex_and_subfaces ( SimplexVector4 );
+ BOOST_CHECK(SimplexVector4.size() == 2);
+ st.insert_simplex_and_subfaces(SimplexVector4);
- BOOST_CHECK( st.num_vertices() == (size_t)4 ); // Not incremented (all are existing)
+ BOOST_CHECK(st.num_vertices() == (size_t) 4); // Not incremented (all are existing)
// ++ FIFTH
std::cout << " - INSERT (3,4,5)" << std::endl;
@@ -468,10 +477,10 @@ BOOST_AUTO_TEST_CASE( NSimplexAndSubfaces_tree_insertion )
SimplexVector5.push_back(FOURTH_VERTEX_HANDLE);
SimplexVector5.push_back(FIFTH_VERTEX_HANDLE);
SimplexVector5.push_back(SIXTH_VERTEX_HANDLE);
- BOOST_CHECK( SimplexVector5.size() == 3 );
- st.insert_simplex_and_subfaces ( SimplexVector5 );
+ BOOST_CHECK(SimplexVector5.size() == 3);
+ st.insert_simplex_and_subfaces(SimplexVector5);
- BOOST_CHECK( st.num_vertices() == (size_t)6 );
+ BOOST_CHECK(st.num_vertices() == (size_t) 6);
// ++ SIXTH
std::cout << " - INSERT (0,1,6,7)" << std::endl;
@@ -480,10 +489,10 @@ BOOST_AUTO_TEST_CASE( NSimplexAndSubfaces_tree_insertion )
SimplexVector6.push_back(SECOND_VERTEX_HANDLE);
SimplexVector6.push_back(SEVENTH_VERTEX_HANDLE);
SimplexVector6.push_back(EIGHTH_VERTEX_HANDLE);
- BOOST_CHECK( SimplexVector6.size() == 4 );
- st.insert_simplex_and_subfaces ( SimplexVector6 );
+ BOOST_CHECK(SimplexVector6.size() == 4);
+ st.insert_simplex_and_subfaces(SimplexVector6);
- BOOST_CHECK( st.num_vertices() == (size_t)8 ); // +2 (6 and 7 are not existing - 0 and 1 are already existing)
+ BOOST_CHECK(st.num_vertices() == (size_t) 8); // +2 (6 and 7 are not existing - 0 and 1 are already existing)
/* Inserted simplex: */
/* 1 6 */
@@ -506,13 +515,13 @@ BOOST_AUTO_TEST_CASE( NSimplexAndSubfaces_tree_insertion )
typeSimplex simplexPair4 = std::make_pair(SimplexVector4, DEFAULT_FILTRATION_VALUE);
typeSimplex simplexPair5 = std::make_pair(SimplexVector5, DEFAULT_FILTRATION_VALUE);
typeSimplex simplexPair6 = std::make_pair(SimplexVector6, DEFAULT_FILTRATION_VALUE);
- test_simplex_tree_contains(st,simplexPair1,6); // (2,1,0) is in position 6
- test_simplex_tree_contains(st,simplexPair2,7); // (3) is in position 7
- test_simplex_tree_contains(st,simplexPair3,8); // (3,0) is in position 8
- test_simplex_tree_contains(st,simplexPair4,2); // (1,0) is in position 2
- test_simplex_tree_contains(st,simplexPair5,14); // (3,4,5) is in position 14
- test_simplex_tree_contains(st,simplexPair6,26); // (7,6,1,0) is in position 26
-
+ test_simplex_tree_contains(st, simplexPair1, 6); // (2,1,0) is in position 6
+ test_simplex_tree_contains(st, simplexPair2, 7); // (3) is in position 7
+ test_simplex_tree_contains(st, simplexPair3, 8); // (3,0) is in position 8
+ test_simplex_tree_contains(st, simplexPair4, 2); // (1,0) is in position 2
+ test_simplex_tree_contains(st, simplexPair5, 14); // (3,4,5) is in position 14
+ test_simplex_tree_contains(st, simplexPair6, 26); // (7,6,1,0) is in position 26
+
// ------------------------------------------------------------------------------------------------------------------
// Find in the simplex_tree
// ------------------------------------------------------------------------------------------------------------------
@@ -547,7 +556,7 @@ BOOST_AUTO_TEST_CASE( NSimplexAndSubfaces_tree_insertion )
std::cout << "***- NO IT ISN'T\n";
// Check it is found
BOOST_CHECK(simplexFound != st.null_simplex());
-
+
typeVectorVertex otherSimplexVector;
otherSimplexVector.push_back(UNKNOWN_VERTEX_HANDLE);
otherSimplexVector.push_back(SECOND_VERTEX_HANDLE);
@@ -572,19 +581,128 @@ BOOST_AUTO_TEST_CASE( NSimplexAndSubfaces_tree_insertion )
std::cout << "***- NO IT ISN'T\n";
// Check it is found
BOOST_CHECK(simplexFound != st.null_simplex());
-
+
+
+
// Display the Simplex_tree - Can not be done in the middle of 2 inserts
std::cout << "The complex contains " << st.num_simplices() << " simplices" << std::endl;
std::cout << " - dimension " << st.dimension() << " - filtration " << st.filtration() << std::endl;
std::cout << std::endl << std::endl << "Iterator on Simplices in the filtration, with [filtration value]:" << std::endl;
- for( auto f_simplex : st.filtration_simplex_range() )
- {
+ for (auto f_simplex : st.filtration_simplex_range()) {
std::cout << " " << "[" << st.filtration(f_simplex) << "] ";
- for( auto vertex : st.simplex_vertex_range(f_simplex) )
- {
- std::cout << (int)vertex << " ";
+ for (auto vertex : st.simplex_vertex_range(f_simplex)) {
+ std::cout << (int) vertex << " ";
}
std::cout << std::endl;
}
+ std::cout << "********************************************************************" << std::endl;
+ // TEST COFACE ALGORITHM
+ st.set_dimension(3);
+ std::cout << "COFACE ALGORITHM" << std::endl;
+ std::vector<Vertex_handle> v;
+ std::vector<Vertex_handle> simplex;
+ std::vector<typeST::Simplex_handle> result;
+ v.push_back(3);
+ std::cout << "First test : " << std::endl;
+ std::cout << "Star of (3):" << std::endl;
+
+ simplex.push_back(3);
+ result.push_back(st.find(simplex));
+ simplex.clear();
+
+ simplex.push_back(3);
+ simplex.push_back(0);
+ result.push_back(st.find(simplex));
+ simplex.clear();
+
+ simplex.push_back(4);
+ simplex.push_back(3);
+ result.push_back(st.find(simplex));
+ simplex.clear();
+
+ simplex.push_back(5);
+ simplex.push_back(4);
+ simplex.push_back(3);
+ result.push_back(st.find(simplex));
+ simplex.clear();
+
+ simplex.push_back(5);
+ simplex.push_back(3);
+ result.push_back(st.find(simplex));
+ simplex.clear();
+
+ test_cofaces(st, v, 0, result);
+ v.clear();
+ result.clear();
+
+ v.push_back(1);
+ v.push_back(7);
+ std::cout << "Second test : " << std::endl;
+ std::cout << "Star of (1,7): " << std::endl;
+
+ simplex.push_back(7);
+ simplex.push_back(1);
+ result.push_back(st.find(simplex));
+ simplex.clear();
+
+ simplex.push_back(7);
+ simplex.push_back(6);
+ simplex.push_back(1);
+ simplex.push_back(0);
+ result.push_back(st.find(simplex));
+ simplex.clear();
+
+ simplex.push_back(7);
+ simplex.push_back(1);
+ simplex.push_back(0);
+ result.push_back(st.find(simplex));
+ simplex.clear();
+
+ simplex.push_back(7);
+ simplex.push_back(6);
+ simplex.push_back(1);
+ result.push_back(st.find(simplex));
+ simplex.clear();
+
+ test_cofaces(st, v, 0, result);
+ result.clear();
+
+ std::cout << "Third test : " << std::endl;
+ std::cout << "2-dimension Cofaces of simplex(1,7) : " << std::endl;
+
+ simplex.push_back(7);
+ simplex.push_back(1);
+ simplex.push_back(0);
+ result.push_back(st.find(simplex));
+ simplex.clear();
+
+ simplex.push_back(7);
+ simplex.push_back(6);
+ simplex.push_back(1);
+ result.push_back(st.find(simplex));
+ simplex.clear();
+
+ test_cofaces(st, v, 1, result);
+ result.clear();
+
+ std::cout << "Cofaces with a codimension too high (codimension + vetices > tree.dimension) :" << std::endl;
+ test_cofaces(st, v, 5, result);
+ // std::cout << "Cofaces with an empty codimension" << std::endl;
+ // test_cofaces(st, v, -1, result);
+ // std::cout << "Cofaces in an empty simplex tree" << std::endl;
+ // typeST empty_tree;
+ // test_cofaces(empty_tree, v, 1, result);
+ // std::cout << "Cofaces of an empty simplex" << std::endl;
+ // v.clear();
+ // test_cofaces(st, v, 1, result);
+
+ /*
+ // TEST Off read
+ std::cout << "********************************************************************" << std::endl;
+ typeST st2;
+ st2.tree_from_off("test.off");
+ std::cout << st2;
+ */
+
}