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+/* This file is part of the Gudhi Library. The Gudhi library
+ * (Geometric Understanding in Higher Dimensions) is a generic C++
+ * library for computational topology.
+ *
+ * Author(s): Pawel Dlotko
+ *
+ * Copyright (C) 2015 INRIA Saclay (France)
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+
+// for persistence algorithm
+#include <gudhi/reader_utils.h>
+#include <gudhi/Bitmap_cubical_complex.h>
+#include <gudhi/Persistent_cohomology.h>
+
+#include <boost/program_options.hpp>
+
+// standard stuff
+#include <iostream>
+#include <sstream>
+#include <vector>
+#include <cstdlib>
+#include <ctime>
+
+using namespace Gudhi;
+using namespace Gudhi::persistent_cohomology;
+using namespace std;
+
+int main(int argc, char** argv) {
+ srand(time(0));
+
+ cout << "This program computes persistent homology, by using Bitmap_cubical_complex class, of cubical complexes. "
+ "The first parameter of the program is the dimension D of the cubical complex. The next D parameters are number "
+ "of top dimensional cubes in each dimension of the cubical complex. The program will create random cubical "
+ "complex of that sizes and compute persistent homology of it." << endl;
+
+ int p = 2;
+ double min_persistence = 0;
+
+ size_t dimensionOfBitmap = (size_t) atoi(argv[1]);
+ std::vector< unsigned > sizes;
+ size_t multipliers = 1;
+ for (size_t dim = 0; dim != dimensionOfBitmap; ++dim) {
+ unsigned sizeInThisDimension = (unsigned) atoi(argv[2 + dim]);
+ sizes.push_back(sizeInThisDimension);
+ multipliers *= sizeInThisDimension;
+ }
+
+ std::vector< double > data;
+ for (size_t i = 0; i != multipliers; ++i) {
+ data.push_back(rand() / (double) RAND_MAX);
+ }
+
+ Bitmap_cubical_complex<double> b(sizes, data);
+
+ // Compute the persistence diagram of the complex
+ persistent_cohomology::Persistent_cohomology< Bitmap_cubical_complex<double>, Field_Zp > pcoh(b);
+ pcoh.init_coefficients(p); // initializes the coefficient field for homology
+ pcoh.compute_persistent_cohomology(min_persistence);
+
+ stringstream ss;
+ ss << "randomComplex_persistence";
+ std::ofstream out((char*) ss.str().c_str());
+ pcoh.output_diagram(out);
+ out.close();
+
+ return 0;
+}