diff options
Diffstat (limited to 'src/Bitmap_cubical_complex/utilities')
-rw-r--r-- | src/Bitmap_cubical_complex/utilities/CMakeLists.txt | 20 | ||||
-rw-r--r-- | src/Bitmap_cubical_complex/utilities/README | 24 | ||||
-rw-r--r-- | src/Bitmap_cubical_complex/utilities/cubical_complex_persistence.cpp (renamed from src/Bitmap_cubical_complex/utilities/Bitmap_cubical_complex.cpp) | 0 | ||||
-rw-r--r-- | src/Bitmap_cubical_complex/utilities/periodic_cubical_complex_persistence.cpp (renamed from src/Bitmap_cubical_complex/utilities/Bitmap_cubical_complex_periodic_boundary_conditions.cpp) | 0 |
4 files changed, 19 insertions, 25 deletions
diff --git a/src/Bitmap_cubical_complex/utilities/CMakeLists.txt b/src/Bitmap_cubical_complex/utilities/CMakeLists.txt index f0f80059..676a730a 100644 --- a/src/Bitmap_cubical_complex/utilities/CMakeLists.txt +++ b/src/Bitmap_cubical_complex/utilities/CMakeLists.txt @@ -1,29 +1,29 @@ cmake_minimum_required(VERSION 2.6) project(Bitmap_cubical_complex_utilities) -add_executable ( Bitmap_cubical_complex Bitmap_cubical_complex.cpp ) +add_executable ( cubical_complex_persistence cubical_complex_persistence.cpp ) if (TBB_FOUND) - target_link_libraries(Bitmap_cubical_complex ${TBB_LIBRARIES}) + target_link_libraries(cubical_complex_persistence ${TBB_LIBRARIES}) endif() -add_test(NAME Bitmap_cubical_complex_utility_persistence_one_sphere COMMAND $<TARGET_FILE:Bitmap_cubical_complex> +add_test(NAME Bitmap_cubical_complex_utility_persistence_one_sphere COMMAND $<TARGET_FILE:cubical_complex_persistence> "${CMAKE_SOURCE_DIR}/data/bitmap/CubicalOneSphere.txt") -add_test(NAME Bitmap_cubical_complex_utility_persistence_two_sphere COMMAND $<TARGET_FILE:Bitmap_cubical_complex> +add_test(NAME Bitmap_cubical_complex_utility_persistence_two_sphere COMMAND $<TARGET_FILE:cubical_complex_persistence> "${CMAKE_SOURCE_DIR}/data/bitmap/CubicalTwoSphere.txt") -add_executable ( Bitmap_cubical_complex_periodic_boundary_conditions Bitmap_cubical_complex_periodic_boundary_conditions.cpp ) +add_executable ( periodic_cubical_complex_persistence periodic_cubical_complex_persistence.cpp ) if (TBB_FOUND) - target_link_libraries(Bitmap_cubical_complex_periodic_boundary_conditions ${TBB_LIBRARIES}) + target_link_libraries(periodic_cubical_complex_persistence ${TBB_LIBRARIES}) endif() add_test(NAME Bitmap_cubical_complex_utility_periodic_boundary_conditions_2d_torus - COMMAND $<TARGET_FILE:Bitmap_cubical_complex_periodic_boundary_conditions> + COMMAND $<TARGET_FILE:periodic_cubical_complex_persistence> "${CMAKE_SOURCE_DIR}/data/bitmap/2d_torus.txt") add_test(NAME Bitmap_cubical_complex_utility_periodic_boundary_conditions_3d_torus - COMMAND $<TARGET_FILE:Bitmap_cubical_complex_periodic_boundary_conditions> + COMMAND $<TARGET_FILE:periodic_cubical_complex_persistence> "${CMAKE_SOURCE_DIR}/data/bitmap/3d_torus.txt") -install(TARGETS Bitmap_cubical_complex DESTINATION bin) -install(TARGETS Bitmap_cubical_complex_periodic_boundary_conditions DESTINATION bin) +install(TARGETS cubical_complex_persistence DESTINATION bin) +install(TARGETS periodic_cubical_complex_persistence DESTINATION bin) diff --git a/src/Bitmap_cubical_complex/utilities/README b/src/Bitmap_cubical_complex/utilities/README index d9085635..ddff7034 100644 --- a/src/Bitmap_cubical_complex/utilities/README +++ b/src/Bitmap_cubical_complex/utilities/README @@ -1,24 +1,18 @@ # Bitmap_cubical_complex #
-## `Bitmap_cubical_complex` ##
-This program computes persistent homology, by using the Bitmap_cubical_complex class, of cubical complexes provided in text files in Perseus style. The only number in the first line is a dimension D of a bitmap. In the lines I between 2 and D+1 there are numbers of top dimensional cells in the direction I. Let N denote product of the numbers in the lines between 2 and D. In the lines D+2 to D+2+N there are filtrations of top dimensional cells. We assume that the cells are in the lexicographical order.
+## `cubical_complex_persistence` ##
+This program computes persistent homology, by using the Bitmap_cubical_complex class, of cubical complexes provided in text files in Perseus style. See [here](http://gudhi.gforge.inria.fr/doc/latest/fileformats.html#FileFormatsPerseus) for a description of the file format.
-Examples:
+Example:
-* Create a Cubical Complex from the Perseus style file CubicalOneSphere.txt, computes Persistence cohomology from it and writes the results in a persistence file:
-`Bitmap_cubical_complex data/bitmap/CubicalOneSphere.txt`
+* Create a Cubical Complex from the Perseus style file `CubicalTwoSphere.txt`, computes Persistence cohomology from it and writes the results in a persistence file `CubicalTwoSphere.txt_persistence`:
+`cubical_complex_persistence data/bitmap/CubicalTwoSphere.txt`
-* Create a Cubical Complex from the Perseus style file CubicalTwoSphere.txt, computes Persistence cohomology from it and writes the results in a persistence file:
-`Bitmap_cubical_complex data/bitmap/CubicalTwoSphere.txt`
-
-## `Bitmap_cubical_complex_periodic_boundary_conditions` ##
+## `periodic_cubical_complex_persistence` ##
Same as above, but with periodic boundary conditions.
-Examples:
-
-* Create a Periodical Cubical Complex from the Perseus style file 2d_torus.txt, computes Persistence cohomology from it and writes the results in a persistence file:
-`Bitmap_cubical_complex_periodic_boundary_conditions.exe data/bitmap/2d_torus.txt`
+Example:
-* Create a Periodical Cubical Complex from the Perseus style file 3d_torus.txt, computes Persistence cohomology from it and writes the results in a persistence file:
-`Bitmap_cubical_complex_periodic_boundary_conditions.exe data/bitmap/3d_torus.txt`
+* Create a Periodical Cubical Complex from the Perseus style file `3d_torus.txt`, computes Persistence cohomology from it and writes the results in a persistence file `3d_torus.txt_persistence`:
+`periodic_cubical_complex_persistence data/bitmap/3d_torus.txt`
diff --git a/src/Bitmap_cubical_complex/utilities/Bitmap_cubical_complex.cpp b/src/Bitmap_cubical_complex/utilities/cubical_complex_persistence.cpp index 9d1bc08c..9d1bc08c 100644 --- a/src/Bitmap_cubical_complex/utilities/Bitmap_cubical_complex.cpp +++ b/src/Bitmap_cubical_complex/utilities/cubical_complex_persistence.cpp diff --git a/src/Bitmap_cubical_complex/utilities/Bitmap_cubical_complex_periodic_boundary_conditions.cpp b/src/Bitmap_cubical_complex/utilities/periodic_cubical_complex_persistence.cpp index c812cb3a..c812cb3a 100644 --- a/src/Bitmap_cubical_complex/utilities/Bitmap_cubical_complex_periodic_boundary_conditions.cpp +++ b/src/Bitmap_cubical_complex/utilities/periodic_cubical_complex_persistence.cpp |