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-rw-r--r--src/Persistence_representations/include/gudhi/Persistence_landscape.h154
1 files changed, 77 insertions, 77 deletions
diff --git a/src/Persistence_representations/include/gudhi/Persistence_landscape.h b/src/Persistence_representations/include/gudhi/Persistence_landscape.h
index b819ccb6..dc93bb49 100644
--- a/src/Persistence_representations/include/gudhi/Persistence_landscape.h
+++ b/src/Persistence_representations/include/gudhi/Persistence_landscape.h
@@ -343,7 +343,7 @@ class Persistence_landscape {
bool dbg = false;
if (dbg) {
- std::cerr << "to_average.size() : " << to_average.size() << std::endl;
+ std::cout << "to_average.size() : " << to_average.size() << std::endl;
}
std::vector<Persistence_landscape*> nextLevelMerge(to_average.size());
@@ -357,13 +357,13 @@ class Persistence_landscape {
while (nextLevelMerge.size() != 1) {
if (dbg) {
- std::cerr << "nextLevelMerge.size() : " << nextLevelMerge.size() << std::endl;
+ std::cout << "nextLevelMerge.size() : " << nextLevelMerge.size() << std::endl;
}
std::vector<Persistence_landscape*> nextNextLevelMerge;
nextNextLevelMerge.reserve(to_average.size());
for (size_t i = 0; i < nextLevelMerge.size(); i = i + 2) {
if (dbg) {
- std::cerr << "i : " << i << std::endl;
+ std::cout << "i : " << i << std::endl;
}
Persistence_landscape* l = new Persistence_landscape;
if (i + 1 != nextLevelMerge.size()) {
@@ -374,7 +374,7 @@ class Persistence_landscape {
nextNextLevelMerge.push_back(l);
}
if (dbg) {
- std::cerr << "After this iteration \n";
+ std::cout << "After this iteration \n";
getchar();
}
@@ -471,25 +471,25 @@ Persistence_landscape::Persistence_landscape(const char* filename, size_t dimens
bool operatorEqualDbg = false;
bool Persistence_landscape::operator==(const Persistence_landscape& rhs) const {
if (this->land.size() != rhs.land.size()) {
- if (operatorEqualDbg) std::cerr << "1\n";
+ if (operatorEqualDbg) std::cout << "1\n";
return false;
}
for (size_t level = 0; level != this->land.size(); ++level) {
if (this->land[level].size() != rhs.land[level].size()) {
- if (operatorEqualDbg) std::cerr << "this->land[level].size() : " << this->land[level].size() << "\n";
- if (operatorEqualDbg) std::cerr << "rhs.land[level].size() : " << rhs.land[level].size() << "\n";
- if (operatorEqualDbg) std::cerr << "2\n";
+ if (operatorEqualDbg) std::cout << "this->land[level].size() : " << this->land[level].size() << "\n";
+ if (operatorEqualDbg) std::cout << "rhs.land[level].size() : " << rhs.land[level].size() << "\n";
+ if (operatorEqualDbg) std::cout << "2\n";
return false;
}
for (size_t i = 0; i != this->land[level].size(); ++i) {
if (!(almost_equal(this->land[level][i].first, rhs.land[level][i].first) &&
almost_equal(this->land[level][i].second, rhs.land[level][i].second))) {
if (operatorEqualDbg)
- std::cerr << "this->land[level][i] : " << this->land[level][i].first << " " << this->land[level][i].second
+ std::cout << "this->land[level][i] : " << this->land[level][i].first << " " << this->land[level][i].second
<< "\n";
if (operatorEqualDbg)
- std::cerr << "rhs.land[level][i] : " << rhs.land[level][i].first << " " << rhs.land[level][i].second << "\n";
- if (operatorEqualDbg) std::cerr << "3\n";
+ std::cout << "rhs.land[level][i] : " << rhs.land[level][i].first << " " << rhs.land[level][i].second << "\n";
+ if (operatorEqualDbg) std::cout << "3\n";
return false;
}
}
@@ -507,7 +507,7 @@ void Persistence_landscape::construct_persistence_landscape_from_barcode(
const std::vector<std::pair<double, double> >& p, size_t number_of_levels) {
bool dbg = false;
if (dbg) {
- std::cerr << "Persistence_landscape::Persistence_landscape( const std::vector< std::pair< double , double > >& p )"
+ std::cout << "Persistence_landscape::Persistence_landscape( const std::vector< std::pair< double , double > >& p )"
<< std::endl;
}
@@ -517,9 +517,9 @@ void Persistence_landscape::construct_persistence_landscape_from_barcode(
std::sort(bars.begin(), bars.end(), compare_points_sorting);
if (dbg) {
- std::cerr << "Bars : \n";
+ std::cout << "Bars : \n";
for (size_t i = 0; i != bars.size(); ++i) {
- std::cerr << bars[i].first << " " << bars[i].second << "\n";
+ std::cout << bars[i].first << " " << bars[i].second << "\n";
}
getchar();
}
@@ -545,7 +545,7 @@ void Persistence_landscape::construct_persistence_landscape_from_barcode(
lambda_n.push_back(characteristicPoints[0]);
if (dbg) {
- std::cerr << "1 Adding to lambda_n : (" << -std::numeric_limits<int>::max() << " " << 0 << ") , ("
+ std::cout << "1 Adding to lambda_n : (" << -std::numeric_limits<int>::max() << " " << 0 << ") , ("
<< minus_length(characteristicPoints[0]) << " " << 0 << ") , (" << characteristicPoints[0].first << " "
<< characteristicPoints[0].second << ") \n";
}
@@ -562,13 +562,13 @@ void Persistence_landscape::construct_persistence_landscape_from_barcode(
(birth_plus_deaths(lambda_n[lambda_n.size() - 1]) - minus_length(characteristicPoints[i])) / 2);
lambda_n.push_back(point);
if (dbg) {
- std::cerr << "2 Adding to lambda_n : (" << point.first << " " << point.second << ")\n";
+ std::cout << "2 Adding to lambda_n : (" << point.first << " " << point.second << ")\n";
}
if (dbg) {
- std::cerr << "characteristicPoints[i+p] : " << characteristicPoints[i + p].first << " "
+ std::cout << "characteristicPoints[i+p] : " << characteristicPoints[i + p].first << " "
<< characteristicPoints[i + p].second << "\n";
- std::cerr << "point : " << point.first << " " << point.second << "\n";
+ std::cout << "point : " << point.first << " " << point.second << "\n";
getchar();
}
@@ -577,7 +577,7 @@ void Persistence_landscape::construct_persistence_landscape_from_barcode(
(birth_plus_deaths(point) <= birth_plus_deaths(characteristicPoints[i + p]))) {
newCharacteristicPoints.push_back(characteristicPoints[i + p]);
if (dbg) {
- std::cerr << "3.5 Adding to newCharacteristicPoints : (" << characteristicPoints[i + p].first << " "
+ std::cout << "3.5 Adding to newCharacteristicPoints : (" << characteristicPoints[i + p].first << " "
<< characteristicPoints[i + p].second << ")\n";
getchar();
}
@@ -586,7 +586,7 @@ void Persistence_landscape::construct_persistence_landscape_from_barcode(
newCharacteristicPoints.push_back(point);
if (dbg) {
- std::cerr << "4 Adding to newCharacteristicPoints : (" << point.first << " " << point.second << ")\n";
+ std::cout << "4 Adding to newCharacteristicPoints : (" << point.first << " " << point.second << ")\n";
}
while ((i + p < characteristicPoints.size()) &&
@@ -594,15 +594,15 @@ void Persistence_landscape::construct_persistence_landscape_from_barcode(
(birth_plus_deaths(point) >= birth_plus_deaths(characteristicPoints[i + p]))) {
newCharacteristicPoints.push_back(characteristicPoints[i + p]);
if (dbg) {
- std::cerr << "characteristicPoints[i+p] : " << characteristicPoints[i + p].first << " "
+ std::cout << "characteristicPoints[i+p] : " << characteristicPoints[i + p].first << " "
<< characteristicPoints[i + p].second << "\n";
- std::cerr << "point : " << point.first << " " << point.second << "\n";
- std::cerr << "characteristicPoints[i+p] birth and death : " << minus_length(characteristicPoints[i + p])
+ std::cout << "point : " << point.first << " " << point.second << "\n";
+ std::cout << "characteristicPoints[i+p] birth and death : " << minus_length(characteristicPoints[i + p])
<< " , " << birth_plus_deaths(characteristicPoints[i + p]) << "\n";
- std::cerr << "point birth and death : " << minus_length(point) << " , " << birth_plus_deaths(point)
+ std::cout << "point birth and death : " << minus_length(point) << " , " << birth_plus_deaths(point)
<< "\n";
- std::cerr << "3 Adding to newCharacteristicPoints : (" << characteristicPoints[i + p].first << " "
+ std::cout << "3 Adding to newCharacteristicPoints : (" << characteristicPoints[i + p].first << " "
<< characteristicPoints[i + p].second << ")\n";
getchar();
}
@@ -613,20 +613,20 @@ void Persistence_landscape::construct_persistence_landscape_from_barcode(
lambda_n.push_back(std::make_pair(birth_plus_deaths(lambda_n[lambda_n.size() - 1]), 0));
lambda_n.push_back(std::make_pair(minus_length(characteristicPoints[i]), 0));
if (dbg) {
- std::cerr << "5 Adding to lambda_n : (" << birth_plus_deaths(lambda_n[lambda_n.size() - 1]) << " " << 0
+ std::cout << "5 Adding to lambda_n : (" << birth_plus_deaths(lambda_n[lambda_n.size() - 1]) << " " << 0
<< ")\n";
- std::cerr << "5 Adding to lambda_n : (" << minus_length(characteristicPoints[i]) << " " << 0 << ")\n";
+ std::cout << "5 Adding to lambda_n : (" << minus_length(characteristicPoints[i]) << " " << 0 << ")\n";
}
}
lambda_n.push_back(characteristicPoints[i]);
if (dbg) {
- std::cerr << "6 Adding to lambda_n : (" << characteristicPoints[i].first << " "
+ std::cout << "6 Adding to lambda_n : (" << characteristicPoints[i].first << " "
<< characteristicPoints[i].second << ")\n";
}
} else {
newCharacteristicPoints.push_back(characteristicPoints[i]);
if (dbg) {
- std::cerr << "7 Adding to newCharacteristicPoints : (" << characteristicPoints[i].first << " "
+ std::cout << "7 Adding to newCharacteristicPoints : (" << characteristicPoints[i].first << " "
<< characteristicPoints[i].second << ")\n";
}
}
@@ -730,31 +730,31 @@ double Persistence_landscape::compute_value_at_a_given_point(unsigned level, dou
unsigned coordEnd = this->land[level].size() - 2;
if (compute_value_at_a_given_pointDbg) {
- std::cerr << "Here \n";
- std::cerr << "x : " << x << "\n";
- std::cerr << "this->land[level][coordBegin].first : " << this->land[level][coordBegin].first << "\n";
- std::cerr << "this->land[level][coordEnd].first : " << this->land[level][coordEnd].first << "\n";
+ std::cout << "Here \n";
+ std::cout << "x : " << x << "\n";
+ std::cout << "this->land[level][coordBegin].first : " << this->land[level][coordBegin].first << "\n";
+ std::cout << "this->land[level][coordEnd].first : " << this->land[level][coordEnd].first << "\n";
}
// in this case x is outside the support of the landscape, therefore the value of the landscape is 0.
if (x <= this->land[level][coordBegin].first) return 0;
if (x >= this->land[level][coordEnd].first) return 0;
- if (compute_value_at_a_given_pointDbg) std::cerr << "Entering to the while loop \n";
+ if (compute_value_at_a_given_pointDbg) std::cout << "Entering to the while loop \n";
while (coordBegin + 1 != coordEnd) {
if (compute_value_at_a_given_pointDbg) {
- std::cerr << "coordBegin : " << coordBegin << "\n";
- std::cerr << "coordEnd : " << coordEnd << "\n";
- std::cerr << "this->land[level][coordBegin].first : " << this->land[level][coordBegin].first << "\n";
- std::cerr << "this->land[level][coordEnd].first : " << this->land[level][coordEnd].first << "\n";
+ std::cout << "coordBegin : " << coordBegin << "\n";
+ std::cout << "coordEnd : " << coordEnd << "\n";
+ std::cout << "this->land[level][coordBegin].first : " << this->land[level][coordBegin].first << "\n";
+ std::cout << "this->land[level][coordEnd].first : " << this->land[level][coordEnd].first << "\n";
}
unsigned newCord = (unsigned)floor((coordEnd + coordBegin) / 2.0);
if (compute_value_at_a_given_pointDbg) {
- std::cerr << "newCord : " << newCord << "\n";
- std::cerr << "this->land[level][newCord].first : " << this->land[level][newCord].first << "\n";
+ std::cout << "newCord : " << newCord << "\n";
+ std::cout << "this->land[level][newCord].first : " << this->land[level][newCord].first << "\n";
std::cin.ignore();
}
@@ -771,8 +771,8 @@ double Persistence_landscape::compute_value_at_a_given_point(unsigned level, dou
<< this->land[level][coordEnd].first << "\n";
std::cout << "the y coords are : " << this->land[level][coordBegin].second << " a "
<< this->land[level][coordEnd].second << "\n";
- std::cerr << "coordBegin : " << coordBegin << "\n";
- std::cerr << "coordEnd : " << coordEnd << "\n";
+ std::cout << "coordBegin : " << coordBegin << "\n";
+ std::cout << "coordEnd : " << coordEnd << "\n";
std::cin.ignore();
}
return function_value(this->land[level][coordBegin], this->land[level][coordEnd], x);
@@ -943,7 +943,7 @@ void Persistence_landscape::load_landscape_from_file(const char* filename) {
lineSS >> endd;
landscapeAtThisLevel.push_back(std::make_pair(beginn, endd));
if (dbg) {
- std::cerr << "Reading a point : " << beginn << " , " << endd << std::endl;
+ std::cout << "Reading a point : " << beginn << " , " << endd << std::endl;
}
} else {
if (dbg) {
@@ -985,8 +985,8 @@ Persistence_landscape operation_on_pair_of_landscapes(const Persistence_landscap
if (operation_on_pair_of_landscapesDBG) {
for (size_t i = 0; i != std::min(land1.land.size(), land2.land.size()); ++i) {
- std::cerr << "land1.land[" << i << "].size() : " << land1.land[i].size() << std::endl;
- std::cerr << "land2.land[" << i << "].size() : " << land2.land[i].size() << std::endl;
+ std::cout << "land1.land[" << i << "].size() : " << land1.land[i].size() << std::endl;
+ std::cout << "land2.land[" << i << "].size() : " << land2.land[i].size() << std::endl;
}
getchar();
}
@@ -997,12 +997,12 @@ Persistence_landscape operation_on_pair_of_landscapes(const Persistence_landscap
size_t q = 0;
while ((p + 1 < land1.land[i].size()) && (q + 1 < land2.land[i].size())) {
if (operation_on_pair_of_landscapesDBG) {
- std::cerr << "p : " << p << "\n";
- std::cerr << "q : " << q << "\n";
- std::cerr << "land1.land.size() : " << land1.land.size() << std::endl;
- std::cerr << "land2.land.size() : " << land2.land.size() << std::endl;
- std::cerr << "land1.land[" << i << "].size() : " << land1.land[i].size() << std::endl;
- std::cerr << "land2.land[" << i << "].size() : " << land2.land[i].size() << std::endl;
+ std::cout << "p : " << p << "\n";
+ std::cout << "q : " << q << "\n";
+ std::cout << "land1.land.size() : " << land1.land.size() << std::endl;
+ std::cout << "land2.land.size() : " << land2.land.size() << std::endl;
+ std::cout << "land1.land[" << i << "].size() : " << land1.land[i].size() << std::endl;
+ std::cout << "land2.land[" << i << "].size() : " << land2.land[i].size() << std::endl;
std::cout << "land1.land[i][p].first : " << land1.land[i][p].first << "\n";
std::cout << "land2.land[i][q].first : " << land2.land[i][q].first << "\n";
}
@@ -1110,20 +1110,20 @@ Persistence_landscape operation_on_pair_of_landscapes(const Persistence_landscap
double compute_maximal_distance_non_symmetric(const Persistence_landscape& pl1, const Persistence_landscape& pl2) {
bool dbg = false;
- if (dbg) std::cerr << " compute_maximal_distance_non_symmetric \n";
+ if (dbg) std::cout << " compute_maximal_distance_non_symmetric \n";
// this distance is not symmetric. It compute ONLY distance between inflection points of pl1 and pl2.
double maxDist = 0;
size_t minimalNumberOfLevels = std::min(pl1.land.size(), pl2.land.size());
for (size_t level = 0; level != minimalNumberOfLevels; ++level) {
if (dbg) {
- std::cerr << "Level : " << level << std::endl;
- std::cerr << "PL1 : \n";
+ std::cout << "Level : " << level << std::endl;
+ std::cout << "PL1 : \n";
for (size_t i = 0; i != pl1.land[level].size(); ++i) {
- std::cerr << "(" << pl1.land[level][i].first << "," << pl1.land[level][i].second << ") \n";
+ std::cout << "(" << pl1.land[level][i].first << "," << pl1.land[level][i].second << ") \n";
}
- std::cerr << "PL2 : \n";
+ std::cout << "PL2 : \n";
for (size_t i = 0; i != pl2.land[level].size(); ++i) {
- std::cerr << "(" << pl2.land[level][i].first << "," << pl2.land[level][i].second << ") \n";
+ std::cout << "(" << pl2.land[level][i].first << "," << pl2.land[level][i].second << ") \n";
}
std::cin.ignore();
}
@@ -1143,24 +1143,24 @@ double compute_maximal_distance_non_symmetric(const Persistence_landscape& pl1,
if (maxDist <= val) maxDist = val;
if (dbg) {
- std::cerr << pl1.land[level][i].first << "in [" << pl2.land[level][p2Count].first << ","
+ std::cout << pl1.land[level][i].first << "in [" << pl2.land[level][p2Count].first << ","
<< pl2.land[level][p2Count + 1].first << "] \n";
- std::cerr << "pl1[level][i].second : " << pl1.land[level][i].second << std::endl;
- std::cerr << "function_value( pl2[level][p2Count] , pl2[level][p2Count+1] , pl1[level][i].first ) : "
+ std::cout << "pl1[level][i].second : " << pl1.land[level][i].second << std::endl;
+ std::cout << "function_value( pl2[level][p2Count] , pl2[level][p2Count+1] , pl1[level][i].first ) : "
<< function_value(pl2.land[level][p2Count], pl2.land[level][p2Count + 1], pl1.land[level][i].first)
<< std::endl;
- std::cerr << "val : " << val << std::endl;
+ std::cout << "val : " << val << std::endl;
std::cin.ignore();
}
}
}
- if (dbg) std::cerr << "minimalNumberOfLevels : " << minimalNumberOfLevels << std::endl;
+ if (dbg) std::cout << "minimalNumberOfLevels : " << minimalNumberOfLevels << std::endl;
if (minimalNumberOfLevels < pl1.land.size()) {
for (size_t level = minimalNumberOfLevels; level != pl1.land.size(); ++level) {
for (size_t i = 0; i != pl1.land[level].size(); ++i) {
- if (dbg) std::cerr << "pl1[level][i].second : " << pl1.land[level][i].second << std::endl;
+ if (dbg) std::cout << "pl1[level][i].second : " << pl1.land[level][i].second << std::endl;
if (maxDist < pl1.land[level][i].second) maxDist = pl1.land[level][i].second;
}
}
@@ -1181,7 +1181,7 @@ double compute_distance_of_landscapes(const Persistence_landscape& first, const
lan = lan.abs();
if (dbg) {
- std::cerr << "Abs of difference ; " << lan << std::endl;
+ std::cout << "Abs of difference ; " << lan << std::endl;
getchar();
}
@@ -1189,17 +1189,17 @@ double compute_distance_of_landscapes(const Persistence_landscape& first, const
// \int_{- \infty}^{+\infty}| first-second |^p
double result;
if (p != 1) {
- if (dbg) std::cerr << "Power != 1, compute integral to the power p\n";
+ if (dbg) std::cout << "Power != 1, compute integral to the power p\n";
result = lan.compute_integral_of_landscape(p);
} else {
- if (dbg) std::cerr << "Power = 1, compute integral \n";
+ if (dbg) std::cout << "Power = 1, compute integral \n";
result = lan.compute_integral_of_landscape();
}
// (\int_{- \infty}^{+\infty}| first-second |^p)^(1/p)
return pow(result, 1.0 / p);
} else {
// p == infty
- if (dbg) std::cerr << "Power = infty, compute maximum \n";
+ if (dbg) std::cout << "Power = infty, compute maximum \n";
return lan.compute_maximum();
}
}
@@ -1220,7 +1220,7 @@ double compute_inner_product(const Persistence_landscape& l1, const Persistence_
for (size_t level = 0; level != std::min(l1.size(), l2.size()); ++level) {
if (dbg) {
- std::cerr << "Computing inner product for a level : " << level << std::endl;
+ std::cout << "Computing inner product for a level : " << level << std::endl;
getchar();
}
auto&& l1_land_level = l1.land[level];
@@ -1267,14 +1267,14 @@ double compute_inner_product(const Persistence_landscape& l1, const Persistence_
result += contributionFromThisPart;
if (dbg) {
- std::cerr << "[l1_land_level[l1It].first,l1_land_level[l1It+1].first] : " << l1_land_level[l1It].first
+ std::cout << "[l1_land_level[l1It].first,l1_land_level[l1It+1].first] : " << l1_land_level[l1It].first
<< " , " << l1_land_level[l1It + 1].first << std::endl;
- std::cerr << "[l2_land_level[l2It].first,l2_land_level[l2It+1].first] : " << l2_land_level[l2It].first
+ std::cout << "[l2_land_level[l2It].first,l2_land_level[l2It+1].first] : " << l2_land_level[l2It].first
<< " , " << l2_land_level[l2It + 1].first << std::endl;
- std::cerr << "a : " << a << ", b : " << b << " , c: " << c << ", d : " << d << std::endl;
- std::cerr << "x1 : " << x1 << " , x2 : " << x2 << std::endl;
- std::cerr << "contributionFromThisPart : " << contributionFromThisPart << std::endl;
- std::cerr << "result : " << result << std::endl;
+ std::cout << "a : " << a << ", b : " << b << " , c: " << c << ", d : " << d << std::endl;
+ std::cout << "x1 : " << x1 << " , x2 : " << x2 << std::endl;
+ std::cout << "contributionFromThisPart : " << contributionFromThisPart << std::endl;
+ std::cout << "result : " << result << std::endl;
getchar();
}
@@ -1290,11 +1290,11 @@ double compute_inner_product(const Persistence_landscape& l1, const Persistence_
// in this case, we increment both:
++l2It;
if (dbg) {
- std::cerr << "Incrementing both \n";
+ std::cout << "Incrementing both \n";
}
} else {
if (dbg) {
- std::cerr << "Incrementing first \n";
+ std::cout << "Incrementing first \n";
}
}
++l1It;
@@ -1302,7 +1302,7 @@ double compute_inner_product(const Persistence_landscape& l1, const Persistence_
// in this case we increment l2It
++l2It;
if (dbg) {
- std::cerr << "Incrementing second \n";
+ std::cout << "Incrementing second \n";
}
}
generated by cgit v1.2.3 (git 2.39.1) at 2024-06-28 20:30:14 +0000