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-rw-r--r--src/cmake/modules/FindCython.cmake44
-rw-r--r--src/cmake/modules/GUDHI_doxygen_target.cmake (renamed from src/cmake/modules/GUDHI_doxygen_target.txt)0
-rw-r--r--src/cmake/modules/GUDHI_test_coverage.cmake14
-rw-r--r--src/cmake/modules/GUDHI_third_party_libraries.cmake (renamed from src/cmake/modules/GUDHI_third_party_libraries.txt)37
-rw-r--r--src/cmake/modules/GUDHI_user_version_target.txt2
5 files changed, 95 insertions, 2 deletions
diff --git a/src/cmake/modules/FindCython.cmake b/src/cmake/modules/FindCython.cmake
new file mode 100644
index 00000000..04aed1f8
--- /dev/null
+++ b/src/cmake/modules/FindCython.cmake
@@ -0,0 +1,44 @@
+# Find the Cython compiler.
+#
+# This code sets the following variables:
+#
+# CYTHON_EXECUTABLE
+#
+# See also UseCython.cmake
+
+#=============================================================================
+# Copyright 2011 Kitware, Inc.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#=============================================================================
+
+# Use the Cython executable that lives next to the Python executable
+# if it is a local installation.
+find_package( PythonInterp )
+if( PYTHONINTERP_FOUND )
+ get_filename_component( _python_path ${PYTHON_EXECUTABLE} PATH )
+ find_program( CYTHON_EXECUTABLE
+ NAMES cython cython.bat cython3
+ HINTS ${_python_path}
+ )
+else()
+ find_program( CYTHON_EXECUTABLE
+ NAMES cython cython.bat cython3
+ )
+endif()
+
+
+include( FindPackageHandleStandardArgs )
+FIND_PACKAGE_HANDLE_STANDARD_ARGS( Cython REQUIRED_VARS CYTHON_EXECUTABLE )
+
+mark_as_advanced( CYTHON_EXECUTABLE )
diff --git a/src/cmake/modules/GUDHI_doxygen_target.txt b/src/cmake/modules/GUDHI_doxygen_target.cmake
index d2cb952d..d2cb952d 100644
--- a/src/cmake/modules/GUDHI_doxygen_target.txt
+++ b/src/cmake/modules/GUDHI_doxygen_target.cmake
diff --git a/src/cmake/modules/GUDHI_test_coverage.cmake b/src/cmake/modules/GUDHI_test_coverage.cmake
new file mode 100644
index 00000000..ce171a0e
--- /dev/null
+++ b/src/cmake/modules/GUDHI_test_coverage.cmake
@@ -0,0 +1,14 @@
+
+if (GCOVR_PATH)
+ # for gcovr to make coverage reports - Corbera Jenkins plugin
+ set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fprofile-arcs -ftest-coverage")
+endif()
+if (GPROF_PATH)
+ # for gprof to make coverage reports - Jenkins
+ set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pg")
+endif()
+
+function(gudhi_add_coverage_test unitary_test)
+ add_test(NAME ${unitary_test} COMMAND $<TARGET_FILE:${unitary_test}>
+ "--log_format=XML" "--log_sink=${CMAKE_BINARY_DIR}/${unitary_test}_UT.xml" "--log_level=test_suite" "--report_level=no")
+endfunction()
diff --git a/src/cmake/modules/GUDHI_third_party_libraries.txt b/src/cmake/modules/GUDHI_third_party_libraries.cmake
index 1974f70f..5f84c602 100644
--- a/src/cmake/modules/GUDHI_third_party_libraries.txt
+++ b/src/cmake/modules/GUDHI_third_party_libraries.cmake
@@ -105,3 +105,40 @@ LINK_DIRECTORIES(${Boost_LIBRARY_DIRS})
message(STATUS "boost include dirs:" ${Boost_INCLUDE_DIRS})
message(STATUS "boost library dirs:" ${Boost_LIBRARY_DIRS})
+
+macro( find_the_lib placeholder THE_LIBS )
+ set (THE_LIB_WE_FOUND "NO")
+ foreach(THE_LIB ${THE_LIBS})
+ if(EXISTS ${THE_LIB})
+ get_filename_component(THE_LIB_WE ${THE_LIB} NAME_WE)
+ if (NOT THE_LIB_WE_FOUND)
+ set (THE_LIB_WE_FOUND "YES")
+ set(returnValue "${THE_LIB_WE}")
+ endif(NOT THE_LIB_WE_FOUND)
+ endif(EXISTS ${THE_LIB})
+ endforeach(THE_LIB ${THE_LIBS})
+endmacro( find_the_lib )
+
+# Find the correct Python interpreter.
+# Can be set with -DPYTHON_EXECUTABLE=/usr/bin/python3 or -DPython_ADDITIONAL_VERSIONS=3 for instance.
+find_package(Cython)
+
+if(NOT GUDHI_CYTHON_PATH)
+ message(FATAL_ERROR "ERROR: GUDHI_CYTHON_PATH is not valid.")
+endif(NOT GUDHI_CYTHON_PATH)
+
+if(PYTHONINTERP_FOUND AND CYTHON_FOUND)
+ # Unitary tests are available through py.test
+ find_program( PYTEST_PATH py.test )
+ # Default found version 2
+ if(PYTHON_VERSION_MAJOR EQUAL 2)
+ # Documentation generation is available through sphinx
+ find_program( SPHINX_PATH sphinx-build )
+ elseif(PYTHON_VERSION_MAJOR EQUAL 3)
+ # Documentation generation is available through sphinx
+ set(SPHINX_PATH "${CMAKE_SOURCE_DIR}/${GUDHI_CYTHON_PATH}/doc/python3-sphinx-build")
+ else()
+ message(FATAL_ERROR "ERROR: Try to compile the Cython interface. Python version ${PYTHON_VERSION_STRING} is not valid.")
+ endif(PYTHON_VERSION_MAJOR EQUAL 2)
+endif(PYTHONINTERP_FOUND AND CYTHON_FOUND)
+
diff --git a/src/cmake/modules/GUDHI_user_version_target.txt b/src/cmake/modules/GUDHI_user_version_target.txt
index a971f1d9..8b7cf0e2 100644
--- a/src/cmake/modules/GUDHI_user_version_target.txt
+++ b/src/cmake/modules/GUDHI_user_version_target.txt
@@ -35,8 +35,6 @@ if (NOT CMAKE_VERSION VERSION_LESS 2.8.11)
copy ${CMAKE_SOURCE_DIR}/src/GUDHIConfig.cmake.in ${GUDHI_USER_VERSION_DIR}/GUDHIConfig.cmake.in)
add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
copy ${CMAKE_SOURCE_DIR}/CMakeGUDHIVersion.txt ${GUDHI_USER_VERSION_DIR}/CMakeGUDHIVersion.txt)
- add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
- copy ${CMAKE_SOURCE_DIR}/GUDHIVersion.cmake.in ${GUDHI_USER_VERSION_DIR}/GUDHIVersion.cmake.in)
add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
copy_directory ${CMAKE_SOURCE_DIR}/biblio ${GUDHI_USER_VERSION_DIR}/biblio)