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-rw-r--r--src/common/doc/main_page.h43
1 files changed, 34 insertions, 9 deletions
diff --git a/src/common/doc/main_page.h b/src/common/doc/main_page.h
index 5ca0a6bc..593faea5 100644
--- a/src/common/doc/main_page.h
+++ b/src/common/doc/main_page.h
@@ -3,7 +3,9 @@
* \image html "Gudhi_banner.png" "" width=20cm
*
* \section Introduction Introduction
- * The Gudhi library (Geometry Understanding in Higher Dimensions) is a generic open source C++ library for
+ * The GUDHI library (Geometry Understanding in Higher Dimensions) is a generic open source
+ * <a class="el" target="_blank" href="http://gudhi.gforge.inria.fr/doc/latest/">C++ library</a>, with a
+ * <a class="el" target="_blank" href="http://gudhi.gforge.inria.fr/cython/latest/">Cython interface</a>, for
* Computational Topology and Topological Data Analysis
* (<a class="el" target="_blank" href="https://en.wikipedia.org/wiki/Topological_data_analysis">TDA</a>).
* The GUDHI library intends to help the development of new algorithmic solutions in TDA and their transfer to
@@ -62,7 +64,7 @@
<tr>
<td width="25%">
<b>Author:</b> Cl&eacute;ment Maria, Pawel Dlotko, Vincent Rouvreau<br>
- <b>Introduced in:</b> GUDHI 1.4.0<br>
+ <b>Introduced in:</b> GUDHI 2.0.0<br>
<b>Copyright:</b> GPL v3<br>
</td>
<td width="75%">
@@ -118,7 +120,7 @@
<tr>
<td width="25%">
<b>Author:</b> Cl&eacute;ment Jamin<br>
- <b>Introduced in:</b> GUDHI 1.4.0<br>
+ <b>Introduced in:</b> GUDHI 2.0.0<br>
<b>Copyright:</b> GPL v3<br>
<b>Requires:</b> \ref cgal &ge; 4.8.0 and \ref eigen3
</td>
@@ -157,7 +159,7 @@
<tr>
<td width="25%">
<b>Author:</b> Fran&ccedil;ois Godi<br>
- <b>Introduced in:</b> GUDHI 1.4.0<br>
+ <b>Introduced in:</b> GUDHI 2.0.0<br>
<b>Copyright:</b> GPL v3<br>
<b>Requires:</b> \ref cgal &ge; 4.8.0 and \ref eigen3
</td>
@@ -213,11 +215,11 @@
</table>
*/
-/*! \page installation Gudhi installation
+/*! \page installation GUDHI installation
* \tableofcontents
- * As Gudhi is a header only library, there is no need to install the library.
+ * As GUDHI is a header only library, there is no need to install the library.
*
- * Examples of Gudhi headers inclusion can be found in \ref demos.
+ * Examples of GUDHI headers inclusion can be found in \ref demos.
*
* \section compiling Compiling
* The library uses c++11 and requires <a target="_blank" href="http://www.boost.org/">Boost</a> with version 1.48.0 or
@@ -236,6 +238,15 @@ make \endverbatim
* To test your build, run the following command in a terminal:
* \verbatim make test \endverbatim
*
+ * \subsection documentationgeneration Documentation
+ * To generate the documentation, <a target="_blank" href="http://www.doxygen.org/">Doxygen</a> is required.
+ * Run the following command in a terminal:
+\verbatim
+make doxygen
+# Documentation will be generated in the folder YYYY-MM-DD-hh-mm-ss_GUDHI_X.Y.Z/doc/html/
+# You can customize the directory name by calling `cmake -DUSER_VERSION_DIR=/my/custom/folder`
+\endverbatim
+ *
* \section optionallibrary Optional third-party library
* \subsection gmp GMP
* The multi-field persistent homology algorithm requires GMP which is a free library for arbitrary-precision
@@ -251,6 +262,10 @@ make \endverbatim
* \subsection cgal CGAL
* The \ref alpha_complex data structure, \ref bottleneck_distance, and few examples requires CGAL, which is a C++
* library which provides easy access to efficient and reliable geometric algorithms.
+ *
+ * \note There is no need to install CGAL, you can just <CODE>cmake . && make</CODE> CGAL (or even
+ * <CODE>cmake -DCGAL_HEADER_ONLY=ON .</CODE> for CGAL version &ge; 4.8.0), thereafter you will be able to compile
+ * GUDHI by calling <CODE>cmake -DCGAL_DIR=/your/path/to/CGAL-X.Y .. && make</CODE>
*
* Having CGAL version 4.4.0 or higher installed is recommended. The procedure to install this library according to
* your operating system is detailed here http://doc.cgal.org/latest/Manual/installation.html
@@ -259,6 +274,10 @@ make \endverbatim
* Library</a> (CGAL \cite cgal:eb-15b) and will not be built if CGAL is not installed:
* \li <a href="_persistent_cohomology_2alpha_complex_3d_persistence_8cpp-example.html">
* Persistent_cohomology/alpha_complex_3d_persistence.cpp</a>
+ * \li <a href="_persistent_cohomology_2exact_alpha_complex_3d_persistence_8cpp-example.html">
+ * Persistent_cohomology/exact_alpha_complex_3d_persistence.cpp</a>
+ * \li <a href="_persistent_cohomology_2weighted_alpha_complex_3d_persistence_8cpp-example.html">
+ * Persistent_cohomology/weighted_alpha_complex_3d_persistence.cpp</a>
* \li <a href="_simplex_tree_2example_alpha_shapes_3_simplex_tree_from_off_file_8cpp-example.html">
* Simplex_tree/example_alpha_shapes_3_simplex_tree_from_off_file.cpp</a>
*
@@ -350,6 +369,10 @@ make \endverbatim
* Persistent_cohomology/rips_persistence.cpp</a>
* \li <a href="_persistent_cohomology_2rips_persistence_step_by_step_8cpp-example.html">
* Persistent_cohomology/rips_persistence_step_by_step.cpp</a>
+ * \li <a href="_persistent_cohomology_2exact_alpha_complex_3d_persistence_8cpp-example.html">
+ * Persistent_cohomology/exact_alpha_complex_3d_persistence.cpp</a>
+ * \li <a href="_persistent_cohomology_2weighted_alpha_complex_3d_persistence_8cpp-example.html">
+ * Persistent_cohomology/weighted_alpha_complex_3d_persistence.cpp</a>
* \li <a href="_persistent_cohomology_2periodic_alpha_complex_3d_persistence_8cpp-example.html">
* Persistent_cohomology/periodic_alpha_complex_3d_persistence.cpp</a>
* \li <a href="_persistent_cohomology_2custom_persistence_sort_8cpp-example.html">
@@ -363,7 +386,7 @@ make \endverbatim
* Please help us improving the quality of the GUDHI library. You may report bugs or suggestions to:
* \verbatim Contact: gudhi-users@lists.gforge.inria.fr \endverbatim
*
- * Gudhi is open to external contributions. If you want to join our development team, please contact us.
+ * GUDHI is open to external contributions. If you want to join our development team, please contact us.
*
*/
@@ -378,7 +401,7 @@ make \endverbatim
* \verbinclude biblio/how_to_cite_gudhi.bib
*/
-// List of Gudhi examples - Doxygen needs at least a file tag to analyse comments
+// List of GUDHI examples - Doxygen needs at least a file tag to analyse comments
/*! @file Examples
* @example Alpha_complex/Alpha_complex_from_off.cpp
* @example Alpha_complex/Alpha_complex_from_points.cpp
@@ -394,6 +417,8 @@ make \endverbatim
* @example Persistent_cohomology/alpha_complex_3d_persistence.cpp
* @example Persistent_cohomology/alpha_complex_persistence.cpp
* @example Persistent_cohomology/rips_persistence_via_boundary_matrix.cpp
+ * @example Persistent_cohomology/exact_alpha_complex_3d_persistence.cpp
+ * @example Persistent_cohomology/weighted_alpha_complex_3d_persistence.cpp
* @example Persistent_cohomology/periodic_alpha_complex_3d_persistence.cpp
* @example Persistent_cohomology/persistence_from_file.cpp
* @example Persistent_cohomology/persistence_from_simple_simplex_tree.cpp