diff options
Diffstat (limited to 'src/python/example')
7 files changed, 78 insertions, 38 deletions
diff --git a/src/python/example/alpha_complex_diagram_persistence_from_off_file_example.py b/src/python/example/alpha_complex_diagram_persistence_from_off_file_example.py index 4079a469..727af4fa 100755 --- a/src/python/example/alpha_complex_diagram_persistence_from_off_file_example.py +++ b/src/python/example/alpha_complex_diagram_persistence_from_off_file_example.py @@ -1,11 +1,15 @@ #!/usr/bin/env python import argparse +import errno +import os import matplotlib.pyplot as plot import gudhi -""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. - See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. +""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - + which is released under MIT. + See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full + license details. Author(s): Vincent Rouvreau Copyright (C) 2016 Inria @@ -41,7 +45,7 @@ args = parser.parse_args() with open(args.file, "r") as f: first_line = f.readline() if (first_line == "OFF\n") or (first_line == "nOFF\n"): - print("#####################################################################") + print("##############################################################") print("AlphaComplex creation from points read in a OFF file") message = "AlphaComplex with max_edge_length=" + repr(args.max_alpha_square) @@ -64,6 +68,7 @@ with open(args.file, "r") as f: gudhi.plot_persistence_diagram(diag, band=args.band) plot.show() else: - print(args.file, "is not a valid OFF file") + raise FileNotFoundError(errno.ENOENT, os.strerror(errno.ENOENT), + args.file) f.close() diff --git a/src/python/example/alpha_rips_persistence_bottleneck_distance.py b/src/python/example/alpha_rips_persistence_bottleneck_distance.py index d5c33ec8..f156826d 100755 --- a/src/python/example/alpha_rips_persistence_bottleneck_distance.py +++ b/src/python/example/alpha_rips_persistence_bottleneck_distance.py @@ -3,9 +3,13 @@ import gudhi import argparse import math +import errno +import os -""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. - See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. +""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - + which is released under MIT. + See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full + license details. Author(s): Vincent Rouvreau Copyright (C) 2016 Inria @@ -36,7 +40,7 @@ with open(args.file, "r") as f: first_line = f.readline() if (first_line == "OFF\n") or (first_line == "nOFF\n"): point_cloud = gudhi.read_points_from_off_file(off_file=args.file) - print("#####################################################################") + print("##############################################################") print("RipsComplex creation from points read in a OFF file") message = "RipsComplex with max_edge_length=" + repr(args.threshold) @@ -46,14 +50,15 @@ with open(args.file, "r") as f: points=point_cloud, max_edge_length=args.threshold ) - rips_stree = rips_complex.create_simplex_tree(max_dimension=args.max_dimension) + rips_stree = rips_complex.create_simplex_tree( + max_dimension=args.max_dimension) message = "Number of simplices=" + repr(rips_stree.num_simplices()) print(message) rips_diag = rips_stree.persistence() - print("#####################################################################") + print("##############################################################") print("AlphaComplex creation from points read in a OFF file") message = "AlphaComplex with max_edge_length=" + repr(args.threshold) @@ -93,13 +98,13 @@ with open(args.file, "r") as f: print(message) max_b_distance = max(bottleneck_distance, max_b_distance) - print( - "================================================================================" - ) + print("==============================================================") message = "Bottleneck distance is " + repr(max_b_distance) print(message) else: - print(args.file, "is not a valid OFF file") + raise FileNotFoundError(errno.ENOENT, os.strerror(errno.ENOENT), + args.file) + f.close() diff --git a/src/python/example/euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py b/src/python/example/euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py index 4903667e..e1e572df 100755 --- a/src/python/example/euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py +++ b/src/python/example/euclidean_strong_witness_complex_diagram_persistence_from_off_file_example.py @@ -1,11 +1,15 @@ #!/usr/bin/env python import argparse +import errno +import os import matplotlib.pyplot as plot import gudhi -""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. - See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. +""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - + which is released under MIT. + See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full + license details. Author(s): Vincent Rouvreau Copyright (C) 2016 Inria @@ -44,8 +48,9 @@ args = parser.parse_args() with open(args.file, "r") as f: first_line = f.readline() if (first_line == "OFF\n") or (first_line == "nOFF\n"): - print("#####################################################################") - print("EuclideanStrongWitnessComplex creation from points read in a OFF file") + print("##############################################################") + print("EuclideanStrongWitnessComplex creation from points read "\ + "in a OFF file") witnesses = gudhi.read_points_from_off_file(off_file=args.file) landmarks = gudhi.pick_n_random_points( @@ -64,7 +69,8 @@ with open(args.file, "r") as f: witnesses=witnesses, landmarks=landmarks ) simplex_tree = witness_complex.create_simplex_tree( - max_alpha_square=args.max_alpha_square, limit_dimension=args.limit_dimension + max_alpha_square=args.max_alpha_square, + limit_dimension=args.limit_dimension ) message = "Number of simplices=" + repr(simplex_tree.num_simplices()) @@ -79,6 +85,7 @@ with open(args.file, "r") as f: gudhi.plot_persistence_diagram(diag, band=args.band) plot.show() else: - print(args.file, "is not a valid OFF file") + raise FileNotFoundError(errno.ENOENT, os.strerror(errno.ENOENT), + args.file) f.close() diff --git a/src/python/example/euclidean_witness_complex_diagram_persistence_from_off_file_example.py b/src/python/example/euclidean_witness_complex_diagram_persistence_from_off_file_example.py index 339a8577..58cb2bb5 100755 --- a/src/python/example/euclidean_witness_complex_diagram_persistence_from_off_file_example.py +++ b/src/python/example/euclidean_witness_complex_diagram_persistence_from_off_file_example.py @@ -1,11 +1,15 @@ #!/usr/bin/env python import argparse +import errno +import os import matplotlib.pyplot as plot import gudhi -""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. - See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. +""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - + which is released under MIT. + See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full + license details. Author(s): Vincent Rouvreau Copyright (C) 2016 Inria @@ -78,6 +82,7 @@ with open(args.file, "r") as f: gudhi.plot_persistence_diagram(diag, band=args.band) plot.show() else: - print(args.file, "is not a valid OFF file") + raise FileNotFoundError(errno.ENOENT, os.strerror(errno.ENOENT), + args.file) f.close() diff --git a/src/python/example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py b/src/python/example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py index c692e66f..499171df 100755 --- a/src/python/example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py +++ b/src/python/example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py @@ -2,10 +2,14 @@ import argparse import matplotlib.pyplot as plot +import errno +import os import gudhi -""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. - See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. +""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - + which is released under MIT. + See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full + license details. Author(s): Vincent Rouvreau Copyright (C) 2016 Inria @@ -57,9 +61,10 @@ parser.add_argument( args = parser.parse_args() if is_file_perseus(args.file): - print("#####################################################################") + print("##################################################################") print("PeriodicCubicalComplex creation") - periodic_cubical_complex = gudhi.PeriodicCubicalComplex(perseus_file=args.file) + periodic_cubical_complex = gudhi.PeriodicCubicalComplex( + perseus_file=args.file) print("persistence(homology_coeff_field=3, min_persistence=0)=") diag = periodic_cubical_complex.persistence( @@ -73,4 +78,5 @@ if is_file_perseus(args.file): gudhi.plot_persistence_barcode(diag) plot.show() else: - print(args.file, "is not a valid perseus style file") + raise FileNotFoundError(errno.ENOENT, os.strerror(errno.ENOENT), + args.file) diff --git a/src/python/example/rips_complex_diagram_persistence_from_off_file_example.py b/src/python/example/rips_complex_diagram_persistence_from_off_file_example.py index c757aca7..6f992508 100755 --- a/src/python/example/rips_complex_diagram_persistence_from_off_file_example.py +++ b/src/python/example/rips_complex_diagram_persistence_from_off_file_example.py @@ -1,11 +1,15 @@ #!/usr/bin/env python import argparse +import errno +import os import matplotlib.pyplot as plot import gudhi -""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. - See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. +""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - + which is released under MIT. + See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full + license details. Author(s): Vincent Rouvreau Copyright (C) 2016 Inria @@ -42,10 +46,11 @@ args = parser.parse_args() with open(args.file, "r") as f: first_line = f.readline() if (first_line == "OFF\n") or (first_line == "nOFF\n"): - print("#####################################################################") + print("##############################################################") print("RipsComplex creation from points read in a OFF file") - message = "RipsComplex with max_edge_length=" + repr(args.max_edge_length) + message = "RipsComplex with max_edge_length=" + \ + repr(args.max_edge_length) print(message) point_cloud = gudhi.read_points_from_off_file(off_file=args.file) @@ -68,6 +73,7 @@ with open(args.file, "r") as f: gudhi.plot_persistence_diagram(diag, band=args.band) plot.show() else: - print(args.file, "is not a valid OFF file") + raise FileNotFoundError(errno.ENOENT, os.strerror(errno.ENOENT), + args.file) f.close() diff --git a/src/python/example/tangential_complex_plain_homology_from_off_file_example.py b/src/python/example/tangential_complex_plain_homology_from_off_file_example.py index f0df2189..85bade4a 100755 --- a/src/python/example/tangential_complex_plain_homology_from_off_file_example.py +++ b/src/python/example/tangential_complex_plain_homology_from_off_file_example.py @@ -1,11 +1,15 @@ #!/usr/bin/env python import argparse +import errno +import os import matplotlib.pyplot as plot import gudhi -""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. - See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. +""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - + which is released under MIT. + See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full + license details. Author(s): Vincent Rouvreau Copyright (C) 2016 Inria @@ -19,7 +23,7 @@ __copyright__ = "Copyright (C) 2016 Inria" __license__ = "MIT" parser = argparse.ArgumentParser( - description="TangentialComplex creation from " "points read in a OFF file.", + description="TangentialComplex creation from points read in a OFF file.", epilog="Example: " "example/tangential_complex_plain_homology_from_off_file_example.py " "-f ../data/points/tore3D_300.off -i 3" @@ -41,10 +45,11 @@ args = parser.parse_args() with open(args.file, "r") as f: first_line = f.readline() if (first_line == "OFF\n") or (first_line == "nOFF\n"): - print("#####################################################################") + print("##############################################################") print("TangentialComplex creation from points read in a OFF file") - tc = gudhi.TangentialComplex(intrisic_dim=args.intrisic_dim, off_file=args.file) + tc = gudhi.TangentialComplex(intrisic_dim=args.intrisic_dim, + off_file=args.file) tc.compute_tangential_complex() st = tc.create_simplex_tree() @@ -60,6 +65,7 @@ with open(args.file, "r") as f: gudhi.plot_persistence_diagram(diag, band=args.band) plot.show() else: - print(args.file, "is not a valid OFF file") + raise FileNotFoundError(errno.ENOENT, os.strerror(errno.ENOENT), + args.file) f.close() |