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-rw-r--r--src/python/include/Alpha_complex_interface.h69
1 files changed, 49 insertions, 20 deletions
diff --git a/src/python/include/Alpha_complex_interface.h b/src/python/include/Alpha_complex_interface.h
index 40de88f3..3ac5db1f 100644
--- a/src/python/include/Alpha_complex_interface.h
+++ b/src/python/include/Alpha_complex_interface.h
@@ -23,45 +23,74 @@
#include <iostream>
#include <vector>
#include <string>
+#include <memory> // for std::unique_ptr
namespace Gudhi {
namespace alpha_complex {
class Alpha_complex_interface {
- using Dynamic_kernel = CGAL::Epeck_d< CGAL::Dynamic_dimension_tag >;
- using Point_d = Dynamic_kernel::Point_d;
+ private:
+ using Exact_kernel = CGAL::Epeck_d<CGAL::Dynamic_dimension_tag>;
+ using Inexact_kernel = CGAL::Epick_d<CGAL::Dynamic_dimension_tag>;
+ using Point_exact_kernel = typename Exact_kernel::Point_d;
+ using Point_inexact_kernel = typename Inexact_kernel::Point_d;
- public:
- Alpha_complex_interface(const std::vector<std::vector<double>>& points) {
- auto mkpt = [](std::vector<double> const& vec){
- return Point_d(vec.size(), vec.begin(), vec.end());
- };
- alpha_complex_ = new Alpha_complex<Dynamic_kernel>(boost::adaptors::transform(points, mkpt));
+ template <typename CgalPointType>
+ std::vector<double> pt_cgal_to_cython(CgalPointType& point) {
+ std::vector<double> vd;
+ for (auto coord = point.cartesian_begin(); coord != point.cartesian_end(); coord++)
+ vd.push_back(CGAL::to_double(*coord));
+ return vd;
}
- Alpha_complex_interface(const std::string& off_file_name, bool from_file = true) {
- alpha_complex_ = new Alpha_complex<Dynamic_kernel>(off_file_name);
+ template <typename CgalPointType>
+ static CgalPointType pt_cython_to_cgal(std::vector<double> const& vec) {
+ return CgalPointType(vec.size(), vec.begin(), vec.end());
}
- ~Alpha_complex_interface() {
- delete alpha_complex_;
+ public:
+ Alpha_complex_interface(const std::vector<std::vector<double>>& points, bool fast_version)
+ : fast_version_(fast_version) {
+ if (fast_version_) {
+ ac_inexact_ptr_ = std::make_unique<Alpha_complex<Inexact_kernel>>(
+ boost::adaptors::transform(points, pt_cython_to_cgal<Point_inexact_kernel>));
+ } else {
+ ac_exact_ptr_ = std::make_unique<Alpha_complex<Exact_kernel>>(
+ boost::adaptors::transform(points, pt_cython_to_cgal<Point_exact_kernel>));
+ }
+ }
+
+ Alpha_complex_interface(const std::string& off_file_name, bool fast_version, bool from_file = true)
+ : fast_version_(fast_version) {
+ if (fast_version_)
+ ac_inexact_ptr_ = std::make_unique<Alpha_complex<Inexact_kernel>>(off_file_name);
+ else
+ ac_exact_ptr_ = std::make_unique<Alpha_complex<Exact_kernel>>(off_file_name);
}
std::vector<double> get_point(int vh) {
- std::vector<double> vd;
- Point_d const& ph = alpha_complex_->get_point(vh);
- for (auto coord = ph.cartesian_begin(); coord != ph.cartesian_end(); coord++)
- vd.push_back(CGAL::to_double(*coord));
- return vd;
+ if (fast_version_) {
+ Point_inexact_kernel const& point = ac_inexact_ptr_->get_point(vh);
+ return pt_cgal_to_cython(point);
+ } else {
+ Point_exact_kernel const& point = ac_exact_ptr_->get_point(vh);
+ return pt_cgal_to_cython(point);
+ }
}
- void create_simplex_tree(Simplex_tree_interface<>* simplex_tree, double max_alpha_square) {
- alpha_complex_->create_complex(*simplex_tree, max_alpha_square);
+ void create_simplex_tree(Simplex_tree_interface<>* simplex_tree, double max_alpha_square, bool exact_version,
+ bool default_filtration_value) {
+ if (fast_version_)
+ ac_inexact_ptr_->create_complex(*simplex_tree, max_alpha_square, exact_version, default_filtration_value);
+ else
+ ac_exact_ptr_->create_complex(*simplex_tree, max_alpha_square, exact_version, default_filtration_value);
}
private:
- Alpha_complex<Dynamic_kernel>* alpha_complex_;
+ bool fast_version_;
+ std::unique_ptr<Alpha_complex<Exact_kernel>> ac_exact_ptr_;
+ std::unique_ptr<Alpha_complex<Inexact_kernel>> ac_inexact_ptr_;
};
} // namespace alpha_complex