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2017-06-09No more need of find_the_lib cmake macro to find Windows boost lib namevrouvrea
Fix cmake warning on if with quotes git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2527 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a352820ab0a596961b9851d4a30c40196a70ff98
2017-06-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2526 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 307d82b1c9be8629bdcb89d88e4e6d9deb1ade29
2017-06-09Tangential complex test must link with boost date time libraryvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2525 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2f62d58f2915eead697ba5fbb02e69719f6e471a
2017-06-09Add BOOST_SYSTEM_NO_DEPRECATED definitionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2524 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4718264666a9289a46f282cfcf3200481966c0db
2017-06-08Merge branch cmake_gudhi_modules tobe able to activate/desactivate modules ↵vrouvrea
compilation and test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2517 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3ea8fc4ae22f35f98e454134b61db02520bd1c06
2017-06-08Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2516 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 777f5ba0356d5ed777bf2f90ea1730316e56b82a
2017-06-08Add modules as CMake options in order to be able to activate/desactivate ↵vrouvrea
compilation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2515 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 53d5e669ad310c9d8d17c7f95f1e07c3bf658d77
2017-06-02Fix install issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2510 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c081183c9876761dace595a09ec04fe220846ed6
2017-06-02Get rid of Boost_system library linkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52deba0f2212767b99b801810d356e55417225db
2017-06-02Try to remove boost systemvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2504 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd12c45af5ebeb72c4b49142abab91b46ce1a9da
2017-05-31A branch to test boost_system_no_deprecatedvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2483 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bb3ac8fa89506500e0ef55266b4b358dd444dc56
2017-05-30Merge cmake_modules_for_gudhi branch in trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2469 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a7ae351317d741b2657b0fcde335393fbdfc1630
2017-05-30Merge last trunk modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2468 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0fc91d24907c2259fba5b7bb7d3f870ea1a68d9e
2017-05-30Make install examples mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2467 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 018b6e55c392b37d02503e7822e0a586061c987d
2017-05-30Add a warningvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2465 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a873c9c6fff031968747c3dec197aec06738c32a
2017-05-19Move src/common/utilities/hypergenerator.cpp in src/common/utilitiesvrouvrea
Management of Python distribution packages make install is now installing utilities and GUDHI python module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2453 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a85576c7ae062718900f0db2bfb0dd3f26e87177
2017-05-18Modify the way cmake handles utilities, examples, test and benchmarks with ↵vrouvrea
new options to activate/desactivate them. Move hypergenerator as a common utility. Move random point generation from hypergenerator in src/common/include/gudhi/random_point_generators.h git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2442 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2d13e4b0c09455fb604b684f6d71530352271eb
2017-05-17This branch is to develop modules in order to simplify and factorize GUDHI CMakevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2441 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 184e041ce8e7f5687076b28a91e57490eb6c8576
2017-05-16Merge doxygen_using_mathjax branch with a local copy of MathJax.jsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2434 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9c6260d7b0f91420f0b3dc71d0ba04a422937b86
2017-05-16Modify Doxyfile to make it work with distributed MathJax.jsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2433 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 386ef39799695204b98d43b5a2f36a1a9e91f04e
2017-05-16Add MathJax for distributionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2432 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c0f73996dfdfe217ae2dfc2250e7866d680ae1f7
2017-05-15Merge of the branch for Doxygen to use MathJax.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2429 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7606538aabea730e4cef25c451a9db2041b84c61
2017-05-15Use MATHJAX for doxygen documentation generation.vrouvrea
Fix pseudo code for alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2428 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 05ce587c4ba46e164dad02766cbaca40373e3ad8
2017-05-15Add GPL copyright to the software used to generate the data.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2427 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3aa8a0a8847b57db28ec26a38af72abf3bf509ad
2017-05-15A branch to modify Doxyfile to use Mathjax instead of image generation from ↵vrouvrea
latex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2417 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 66af4706071ec8570f38cc11ecde6957370b1df2
2017-05-09Fix Windows python module compilationvrouvrea
rips_complex_diagram_persistence_from_distance_matrix_file_example.py shall use csv_file instead of off_file git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2409 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b73613ce923e4bb72f5eae110cf290dc2215994d
2017-05-09Doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2407 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59aa4cbeef583b93f5e0e4416a4cd2903643d8f0
2017-05-02typosglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2392 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6f20690dcf711382a244eef6ce6eccab76315710
2017-04-26Fix warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2381 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: db27facc0c7eec7c48233648c6df4a47f9e09697
2017-04-24Remove unused variablescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2379 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 90fd2f0b1fe4ff48e5ba0ee69db76bed60906ec1
2017-04-24Make compilation and tests out of sourcevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2376 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0bc362b7321ed22af0c20f020eafc98efecbac46
2017-04-24Doc typovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2375 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 181a2d688b3333b202aa7a25768413259c6c8fbd
2017-04-19Fix doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2368 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa8997eb2c66b9b25206688acc5819f2ded0e985
2017-04-19Merge add_test_windows branch to fix add_testvrouvrea
Fix a biblio doxygen warning git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2365 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 72a9180aa6be56fca0b5f357247300df17770159
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-18Rename CMake testsvrouvrea
Add specific GUDHI test coverage function Rename cmake/modules/GUDHI_*.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2362 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 071b1eda7d11b1781a9601a013b88a0b2a9b7bf7
2017-04-18A branch to test add_test CMake function for Windows fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2361 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5aa4461a836552f27e27a3a5204ac77a5a74d97a
2017-04-14Fix doc level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2359 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8c141f6c040abcbf76f8eec21b14389ae850318
2017-04-14Remove scripts/generate_version.sh, use make user_versionvrouvrea
Remove GUDHIVersion.cmake.in (was for scripts/generate_version.sh) and CMakeLists.txt mechanism Modify src/Bitmap_cubical_complex/example/CMakeLists.txt to generate files in build directory git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2358 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32c73be6aa9a0a6fcfde09ebf21ff38d48abf5e0
2017-04-14Fix doc level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2357 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2da8fae99b18cf215de376980266f1281ac95172
2017-04-14Fix Title level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2356 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 755e450afddf28f87164a8f1f22c1f58faf9658a
2017-04-14Fix Sphinx and unitary tests issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2354 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7852df8e3fcea5b0b7f37f79f2b8b34cfd1db62c
2017-04-14Fix cython find issue on Windowsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2350 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b539887838ff48d211ee65f8fddaf53500eb84ea
2017-04-14Try of a fix for Windows cython find mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2347 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4c93e7042d79bfea7c758e726f6393b97334c798
2017-04-14Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2346 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 29b4678c6e1ecaec8c43fc68a36aa988ddcbf298
2017-04-12Merge of bottleneck-glisse branch to speed up bottleneck computationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2335 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 164b0e8de1d89e5b056dd01e63d5cb6dae6c67e1
2017-04-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2334 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9461830172c72a205520ae197656c480b1cfcaaf
2017-04-11Fix line length cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2333 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 23035b47dd95c008feb546d7ffb17b96cd7edcfa
2017-04-11Fix some #include ""vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c15320d156c2b928e9eb664a2afed8fa9809e7e
2017-04-11Move Euclidean_distance in Gudhi namespacevrouvrea
Fix cpplints git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2331 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bc5609c2df490db50e82b56a5e6d899dc6370182