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2020-04-24Fix bibliography for sphinxROUVREAU Vincent
2020-04-22Merge pull request #291 from mglisse/test-hnswMarc Glisse
Reduce the probability of failure of test_dtm
2020-04-22Reduce the probability of failure of test_dtmMarc Glisse
It is expected that hnsw sometimes misses one neighbor, which has an impact on the DTM, especially if the number of neighbors considered is low.
2020-04-22Merge pull request #289 from mglisse/doc-eagerpyMarc Glisse
Document several optional dependencies of knn
2020-04-22Document several optional dependencies of knnMarc Glisse
2020-04-21Merge pull request #287 from VincentRouvreau/sphinx_tests_firstVincent Rouvreau
Make sphinx test as first
2020-04-20Merge branch 'master' into sphinx_tests_firstROUVREAU Vincent
2020-04-20Merge pull request #286 from mglisse/circleciMarc Glisse
Tweak CircleCI parallelism
2020-04-20Fix #279ROUVREAU Vincent
2020-04-20Random CircleCI tweakMarc Glisse
2020-04-20Merge pull request #265 from mglisse/dtmMarc Glisse
DTM
2020-04-20Merge pull request #284 from mglisse/wdiagMarc Glisse
Simplify distance-to-diagonal in Wasserstein
2020-04-20Explicitly pass sort_results=True on some testsMarc Glisse
2020-04-20Reintroduce _proj_on_diag, with a unit testMarc Glisse
2020-04-20Add __license__Marc Glisse
2020-04-19Drop redundant testMarc Glisse
torch.isnan(None) raises an exception anyway
2020-04-17Simplify distance-to-diagonal in WassersteinMarc Glisse
2020-04-17Merge pull request #268 from mglisse/filtrationMarc Glisse
Streamline initialize_filtration
2020-04-17Merge remote-tracking branch 'origin/master' into filtrationMarc Glisse
2020-04-16Merge pull request #260 from VincentRouvreau/alpha_complex_improvementVincent Rouvreau
merge https://github.com/mglisse/gudhi-devel/tree/alpha-cache
2020-04-16Fix doc of Simplex_tree about keysMarc Glisse
2020-04-16Update the concept of the simplicial complexMarc Glisse
We use the key now. It wouldn't be hard to use an unordered_map, but since we usually have an unused field key...
2020-04-14Check that the gradient is not NaNMarc Glisse
This can easily happen with pytorch, and there is special code to avoid it.
2020-04-14Merge remote-tracking branch 'origin/master' into dtmMarc Glisse
2020-04-14Doc improvementsMarc Glisse
2020-04-14Install Ubuntu's python3-grpcioMarc Glisse
since the one from PyPI seems broken at the moment.
2020-04-14EagerPy in cmakeMarc Glisse
2020-04-14More testingMarc Glisse
2020-04-14pip install eagerpyMarc Glisse
2020-04-13Tweak to detect fit_transformMarc Glisse
2020-04-13Remove left-over codeMarc Glisse
eagerpy is only used with enable_autodiff
2020-04-13Generalize enable_autodiff to more implementationsMarc Glisse
Still limited to L^p
2020-04-13Fix NaN gradient with pytorchMarc Glisse
2020-04-13Small autodiff tweaksMarc Glisse
2020-04-13enable_autodiff with keopsMarc Glisse
This doesn't seem like the best way to handle it, we may want to handle it like a wrapper that gets the indices from knn (whatever backend) and then computes the distances.
2020-04-12Parallelize the "precomputed" case of knnMarc Glisse
It is supposed to be possible to compile numpy with openmp, but it looks like it isn't done in any of the usual packages. It may be possible to refactor that code so there is less redundancy.
2020-04-11Use longer namesMarc Glisse
2020-04-07Document dependencies for building the docMarc Glisse
2020-04-06Merge pull request #167 from tlacombe/wbary-theoMarc Glisse
Wbary theo
2020-04-06Remove trailing whitespaceMarc Glisse
2020-04-06Merge remote-tracking branch 'upstream/master' into wbary-theoMarc Glisse
2020-04-04Merge pull request #275 from mglisse/biblioMarc Glisse
Improve local bibliographies in python
2020-04-04Missing biblio in one file, change title levelMarc Glisse
2020-04-04Merge pull request #271 from tlacombe/patch-1Vincent Rouvreau
Update next_release.md
2020-04-04Revert "sphinx label warnings"Marc Glisse
This reverts commit d9e6b4f51bc8517453653be2904ab6db9aaab85e. It was able to remove the warnings about duplicate labels, but then it shows [WA1] instead of [1] in the generated doc. And for things cited on multiple pages, it uses the same everywhere, so on a single page, you can have a mix of [I1], [WI2], etc. Not very pretty.
2020-04-04sphinx label warningsMarc Glisse
2020-04-04Local bibliographies in sphinxMarc Glisse
2020-04-03removed the print of energy in verbose mode, added by errortlacombe
2020-04-03rollbackROUVREAU Vincent
2020-04-03openssl issue with pipROUVREAU Vincent
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