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2015-11-09Modification for Porquerolles Workshopvrouvrea
Bar_code_persistence and alpha_complex_persistence git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@893 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 63d2d21d5ff7c9a94a67eafc326bf8a561bf8166
2015-11-04doc reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@886 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1729600550c0065173364d50775ce15d40dd026
2015-11-04Missing a space for not to be on the same linevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@884 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 28ce24bf496e1df4360845dffe1c8ec70c1da72a
2015-11-03Lien vers ma page web.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@883 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 28883bac2ff28977b30615bedd4f7d33b41d07c3
2015-11-03Doxygen fix after doc reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@882 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e702746a6f8bdc7bb06bee2710ebe60dff504c69
2015-11-03Fix doxygen after doc review for 1.2.0vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@881 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cffd514dde3fd716bac3768c4af56d3ff5777931
2015-10-29Add an example that computes (non-persistent) homology.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@880 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 21606fab3356681780ad446e73d5da56b29ec31d
2015-10-25Example to compute persistence of a Rips filtration "in parallel". On a machineglisse
with a gazillion cores, it gains a factor >2 at the expense of some memory. At this point, construction of the Rips graph and expansion are not negligible anymore and could use some parallelism. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@875 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 53d6a74338f1346bd7d1ca018ec15dd1ee8287e8
2015-10-24target="_blank" for external websites.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@874 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 17b1803f2eaae3052d65a8d02a7bec3c9473e9cd
2015-10-24Add contributions sectionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@873 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d251621a0a143139b8ea787017bd195d26bd2e9f
2015-10-23Software page text modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@872 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 43ef4b9ee503de54decee6a25bcd88c9b79be34f
2015-10-23generate_version excludes bottleneck for version 1.2.0 - to be removed for 1.3.0vrouvrea
generate_version copies concept for doxygen purpose Contact gudhi-users on skbl and contraction page Doxygen warning fixes Doxygen Software section git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@871 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bd7e252c2d0528f4bbc40c33a9221e1d6b386510
2015-10-18Also use TBB to build Hasse_complex in parallel.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@870 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6633f9b8261cfb2acfb62d1f4748df73375086bd
2015-10-18Merge from trunkglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@869 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 146512ab939d541613e969fb1e1cef83bfa701a7
2015-10-18GH: dim3 restriction, skbl: num_simplices methodssalinasd
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/skb_simplex_insertion_merge@865 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e7f9d48c4e6af222b6f158e906a3a592027d39b8
2015-10-18Update performance_rips_persistence, which hasn't been working for a long ↵glisse
time. We might want to run it in the testsuite with a smaller parameter so it doesn't take too long. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@863 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1fd91395f855297cf4815d64e94b06a8c400c99b
2015-10-17Simplify operator== for the boundary iterator.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@862 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 48228705e9f310ed842e214c5d8849e8f1e0c670
2015-10-16Merge from trunk.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@859 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ba38ae19afbfbb095dddd6b7203c8ff18d876c70
2015-10-16Sort in parallel in initialize_filtration using TBB.glisse
No build machinery support for now. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@858 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94071e9da20993dff60743ac75125f26ad62e55e
2015-10-16TBB branch.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@857 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6e2ebba197f73e631a8a9ee16b420bf86a61f41f
2015-10-14Update old comment about stable_sort.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@856 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20773a87a3a40113ad8a051be7972289144cd1d7
2015-10-13Manual merge of skb_simplex_insertion after last trunk big modifications on Skblvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/skb_simplex_insertion_merge@855 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d7f7721e2963de439a28040196423d4c0df07d3f
2015-10-13Create a branch to merge skb_simplex_insertion with last trunk modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/skb_simplex_insertion_merge@854 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c5c9764145888fa10914081ca6b08e09ae08003c
2015-10-13Backmerge from trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@853 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3f1b56bf4986df7bb2938ea2fff944eb9bf9b653
2015-10-12Fix program_options issue with MSVCvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@850 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b2a90b0c494f0eae1da67e23527946733d501643
2015-10-12Workaround for include(${CGAL_USE_FILE}) in GudhUI and hypergeneratorvrouvrea
Fix make test issue when cmake in a build directory for SimplexTreeUT and skbl TestGeometricComplex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@849 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d6b35ba4b697c7ee61fcd39b998a0fd717a3716a
2015-10-09osteram is sufficient enough - iostream beforevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@847 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 53ea9daa092a111b843535bad27f6a03cd6ce55a
2015-10-09Fix clang compile failure - must include iostream to redefine operator<<vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@846 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c3c719704415bcd8660123212817eb9ce42c5d2a
2015-10-08cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@845 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8b15f0805527b494f3a57625de5c69d836b287dd
2015-10-08cpplint fixes on GudhUIvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@844 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3acf1e789f3e4bded974f324ce3161bc1d1d2433
2015-10-08Fix cpplint on examples.vrouvrea
Bug fix on persistence_from_simple_simplex_tree. Add persistence examples tests. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@843 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b7b73abb4a5d6bb110376deb689247bfdae035c
2015-10-08cpplint fixes on Contraction + warning fixes + Hide Hasse complex for Gudhi ↵vrouvrea
version 1.2.0 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@841 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ed7bf90a9ae0b000b995c6ae4bbdaedbb1a65dd5
2015-10-08Fix contiguous_vertices(). Use it in boundary iterator.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@838 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5b4475f39fe6adf2190223a753625057260e8805
2015-10-07cpplint fixes on contraction + Eigen3 cmake find modulesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@837 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f2afcb6bc8721680442c97d5297528d41c9d9b0
2015-10-07Let GudhUI in last compilation position as QT is known for modifying ↵vrouvrea
CMAKE_CXX_FLAGS git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@836 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f3bbe579d98a098b4adc89349e619983ceba225b
2015-10-07Enable test suite for user version.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@835 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 87f06171990fe2b5e93515e7c6d3f8553a461f49
2015-10-06Cmake fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@834 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b11aad4d7984b2f156fac8df298516c7780b0df4
2015-10-06Introduce Options::contiguous_vertices.glisse
For now only used and checked in find_vertex. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@833 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ceee8ba85eb21991a836b8f1d1117bcaafeb8c1b
2015-10-06Missing CMake filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@832 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b0b21172738b6cf04afd1e0e125522a56cf3dfba
2015-10-06generate_version.sh must accept version file for generate purposevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@831 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ad5e7221f87a2722f882419c3d5ef2720dcf973c
2015-10-06GUDHIConfig.cmake and GUDHIVersion.cmake generationvrouvrea
generate_version.sh modification to take into account these new files git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@830 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 54d3d4f963fb29c9a142be1c28458ce05215ec79
2015-10-06Branch to make it optional that vertices are numbered 0, ..., ↵glisse
num_simplices-1 without hole. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@829 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b54717e4530db703bec022569031cea916d539fa
2015-10-05No need for Persistent_cohomology_column to have everything private.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@828 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9eea246613f29f78d88e8f1b25cf341c05e5098c
2015-10-05make install fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@827 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7af156ccfdc580bfa52904a6cce77735827d64af
2015-10-05cpplint fixes - simplex_tree_from_file.cpp renamed ↵vrouvrea
simplex_tree_from_cliques_of_graph.cpp - #include "" vs #include <> for skeleton blockers git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@826 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1bd1ad535e4283bce35eeb31fa8d7896b9de474b
2015-10-05Use boost static_vector instead of std::vector in the boundary iterator of ↵glisse
Simplex_tree. The size can never grow very large (bounded by the dimension, which is bounded by the log of the number of simplices) and this avoids a lot of dynamic memory handling. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@825 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f6bdc1ed7bae4c44432a05278a719f9aee26b99
2015-10-05cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@824 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f34c7f0d3632534f272be5c941d71cdc1556e4a9
2015-10-05cpplint fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@823 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fac8cffb3f24a993f4bd6f4429b36c5770bb5560
2015-10-05cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@822 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1cab7ed83b02fd90ab57550ad5363dc36f8b8d05
2015-10-02Doxygen to be made from user version. Hypergenerator fix. Add definitions ↵vrouvrea
for debug traces. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@821 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5625aaab792264df86d7d442a2e6ff9886cf5d24
generated by cgit v1.2.3 (git 2.39.1) at 2024-07-08 11:08:05 +0000