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2017-02-27Add TBB compilation support and documentationvrouvrea
Add Matplotlib results in GUDHI persistence graphical tools git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2112 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e9fe1111d3a7d82c004a390cee77197221f117ec
2017-02-27Alpha complex requires CGAL 4.7 (not 4.8)vrouvrea
Add CMake configuration to cythonize with TBB when found git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2110 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8341a46af52d74f17e5b1fcbb609f5a2d1da52af
2017-02-24Modifications for MacOSX compilationvrouvrea
Add GUDHI web site eader and nice colors for the python doc git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2109 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20923bc3f304cfe96aec58030920c043400c3dd4
2017-02-24Drop unused include gudhi/Clock.h.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2108 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a210a519993cb4f0118fb250e76afea10d20bad3
2017-02-24Let choose_n_farthest_points output distances (optional).glisse
Drop unused CGAL includes. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2107 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e56514dc32af0eb12a52a86c19e5c815e560c7d
2017-02-24Revert previous commit, was supposed to go to a branch !!!glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2106 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59183c46120a19ad0a840dd57b7a4706a4d44bdd
2017-02-24Let choose_n_farthest_points output distances (optional).glisse
Drop unused CGAL includes. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2105 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c5a34492a451c8455c42eb8db1c6c7ca5f1bc7b2
2017-02-24Branch to let choose_n_farthest_points output the distances (and misc cleanups).glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2104 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d820149241cbce1984e0761f0771e67eed41d8f2
2017-02-24Removed all_faces_in includeskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2101 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d56b8c508be289dc84fe58c381596f4da45d0a2
2017-02-23Added the copiable precision to the doc.skachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2100 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1892ed7c04219bee7e3dbf408d49d153d85fe10b
2017-02-23Precisions in the simplicial complex conceptskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2099 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a58b657d4e3793016b01844d9da2dd9553a613e3
2017-02-23Changed default limit_dim in Strongskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2098 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa467ec1ae98bc6a7131cc7daf9348e695086a7c
2017-02-23Doc review fix (sphinx typo)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2097 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e9e35a69ce1286a040348b2a49cd6093342b17fc
2017-02-22Doc fixskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2096 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a93d997f6d2fdef9a8e9dfad9720af5dae998828
2017-02-22Marc's review:1skachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2095 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8a4f9c28d3d279f799b8706366559e2a39d11560
2017-02-22Merged with trunk + minor changesskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2094 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b23778cbe43e7697cd325039e843758a263d927
2017-02-22Fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2093 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 91c0d0e66cc12c305dae9e28454a7b9907c1c361
2017-02-22Fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2092 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df50df0878cdb5ae351b96b4b29e4c95940ae4b8
2017-02-22Code review fix (it was not the correct alpa complex example for persistence)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2091 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 990c071fc32bc88ba7bff1a1a1f4957e8923a0c6
2017-02-22Code review fix (revision numbers for python version)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2090 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a0ed2167cc2efdb5a08f91866ee071daa062b61
2017-02-22Fix code review (we are building Cython and not demos)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2089 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cfa8fb387b808ab846d61b974703988121507080
2017-02-20Hugely improved the complexity of the weak witness complex.skachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2086 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 93fb1d9d1b52ce17b913db080b2ec0692056f87b
2017-02-16Do not use args default value set to []vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2082 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 107892dbf3afcf8d46c80f49470e350f57d0090e
2017-02-16Remove pandas examples and use of OFF files interfaces to be more consistent ↵vrouvrea
(pandas interface is not that hard to be done) Add of distance matrix in Rips git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2081 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3a3b24f0824eed2710edb5bf17d120039973bf62
2017-02-13Removed another dead lineskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2074 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 350daacf747a3e34b4ad0d6c132ef0a91ccc23c6
2017-02-13Removed a useless comment and a dead lineskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2073 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cf13ae95d2757e5d274679107c0b40c185cf47c9
2017-02-13Hid the Active_witness classes from docskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2068 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e37c1486076cf5a1699c643ac71db22934944eca
2017-02-03Modification for GUDHI version 2.0.0vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2060 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b91c810b51851f5ef98b09dd58ce0359003390d
2017-02-03Modification for web site reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2059 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b4e7613a8cef0005ce452d6d778c604ec728090
2017-02-03GUDHI in upper casevrouvrea
Add link to cython doc git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2058 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dd2c37fea2d1d1972e6377d4394437edaf3f4ef7
2017-02-03intervals in dimension documentation typovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2057 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 471efb27b0b669a0112b90b44b32e6117bc772d4
2017-02-03Add intervals in dimension function in cubical alsovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2056 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c1fd5ee1283204c7bef96c5f6245e982657dc1cb
2017-02-03Automatic examples documentation page generationvrouvrea
alpha_rips_persistence_bottleneck_distance example for python Add intervals_in_dim function for simplex tree git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2055 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 460fbe5db9f0c08776952106e729a21460bec36f
2017-02-02Doc updatevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2051 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 718698efa6fdb133b51923c449d97cd2365f75ae
2017-02-02git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2050 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5d5ac9254bef7efff947be09a2fa587a7732f00d
2017-02-02Fixed the docskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2049 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e3ef8165c38d7b3e3dd78bd5ca25e7e92a4139e3
2017-02-02Changed the internal representation of Nearest landmark tableskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2048 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 885b5d305cc9c66bd5719ad989a69027d78e1945
2017-02-02Change doc html theme.vrouvrea
Change tables git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2047 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aaa29b8f610d506efc3762ad17c4fd768e74d399
2017-02-01git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2045 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f932dcfddf32fa95535ca1f9c62f04cd8619d76c
2017-02-01Removed some useless features from the conceptskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2044 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3625e06ddb3e5335b45248ea676aac70660d0804
2017-02-01The rest of the commentsskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2043 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 37e81613f87a77768bde47d3539a2dbc6bf3552b
2017-02-01The rest of the commentsskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2042 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 21b83788d916fdcf2ae265f73dad808b707066e6
2017-02-01Removed next_it from strongskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2041 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7f553a8df6f0f799c5094af9aba2ae361f77af92
2017-02-01Added std::begin and endskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2040 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 985782c21e31296bbd7395357b513c438b3034f3
2017-02-01Added std::begin and endskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2039 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7b1c85ff29b26fb1d0ffbac8f0b2e1f47166f466
2017-01-31Rename Rips and Alpha concept file namesvrouvrea
GUDHI version 2.0.0 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2038 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: be93fae5a69b15de05bfabe75a2d84ef606b589f
2017-01-31Branch for doc change purpose for version 2.0.0vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2037 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5064932713289ac5a93f75b43e4e4237ec71e086
2017-01-31git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2036 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f4998927b72b677f51727fb4efa5ea9fe0c0916f
2017-01-30Merge of branch rips_doc_fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2034 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 62c4af03ee0265364a5a5879df25f350fc323a8a
2017-01-30git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2032 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e8901f1be678dbc71b8e6e7b5666cc475b573b1a