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2017-11-16Add missing includescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2890 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ddda864abff7b9509984dcbc657225ea1c80b1a
2017-11-16Add a script to concatenate utilities/README filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2889 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e79ad60b440d1bb2bd2fb5ede8d541e5970d6aa
2017-11-16Merge last trunk modificationsvrouvrea
Fix doxygen warnings git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2888 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b80b28a10495b6f2519b53885b1bf31be85ed7ac
2017-11-16Code review : Homogenize alpha shape examples command linevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2887 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8c692434eb48c525047bc34a6fab7d7c1af64d56
2017-11-15Doccjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2884 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c5e0a65a484a71d8a9fc1fc2b695dd20a367fd0c
2017-11-15Move 2 more examples into utilitiescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2883 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9fd71a4833c84640be2a0f792f1eaea5109874d
2017-11-15Add iso-cuboid file formatcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2882 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ad82867ef7523c4a03fdb89054e5bd7b8d40f7da
2017-11-15Fixes according to Marc's reviewcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2881 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 84870193cb05cabd8c756a3bbc49083e4d739525
2017-11-14Merged trunk in cc_wit for having fun with Pawel's ideaskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2873 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 56c9a7c1528f0b94ab69e5327dabbc602f18036c
2017-11-13Thanks to code coverage, I fugured out some tests were not performed because ↵vrouvrea
of teir same name git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2872 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9c2158b7e0e77ad7ce8812bdfac312f3f7daf992
2017-11-13Merge of branch periodic_cubical_complex_fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2871 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4fa2858384d6a0b3e8fd25703be40f243e2fea5e
2017-11-13User feedback : documentation shall explain the default homology_coeff_field ↵vrouvrea
is set to '11' in Simplex_tree Python bindings. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2870 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3db5b073fce8ca99271d20690e3559c3a0a6557d
2017-11-08making unit tests for bitmap cubical complexes more efficient.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2854 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34a3668417fd55715ebe7873ba8bf1a14d5dbd8f
2017-11-08Reduce test timevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2849 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f13a91a49ee35ad23a09713a909fe3f49ce9a8ec
2017-11-07Merge cmake.3.9.fix as DOXYGEN_EXECUTABLE is deprecated in cmake 3.9vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2848 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ece40438a98038d3bef26878e1fd05cdd6beead
2017-11-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake.3.9.fix@2847 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 02939a55292a81e9fed3387f8d3e6726283d964b
2017-11-07clang format filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2846 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e4f9294f08f25331eac20bb90a321792e96cca2d
2017-11-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2845 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0c800159d0e87b051d5d4c5419adb903f7e6fa3b
2017-11-07Merge of cgal.4.11.fix branch to unuse gudhi patches and to fix compilation ↵vrouvrea
issue with CGAL 4.11 Add of weighted_periodic_alpha_complex_3d_persistence example git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2842 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fde814b71675902fa7adc523b466304a3bdafdec
2017-11-07A new branch to fix cmake 3.9 bugvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake.3.9.fix@2841 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ead02ac3c7d827c6bd3c7e0d08dbee43b268572f
2017-11-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.11.fix@2839 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 22158e5d4aae2b6c0e5502c585cb6c513c08ac63
2017-11-06Add Alpha complex 3d fix for cgal 4.11vrouvrea
Add weighted_periodic_alpha_complex_3d_persistence example git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.11.fix@2837 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 07d016f7879220064b53ccfe19b169f06e79c86f
2017-11-06Fixing small issue with tests.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2836 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1dfa1b5f33ad3da7318356c79c6876cc4cd6a93f
2017-11-06Merge ST_automatic_dimension_set branch development in trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2834 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 41049bafd6f470536e7a81ac9ad76e3d9395f8e9
2017-11-06Fix typedefcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.11.fix@2833 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f970c56378222a29d03724d4ebd2e3c3084ba57
2017-11-06git-svn-id: ↵cjamin
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.11.fix@2832 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6347e63b69ec97e040450c047301e1f046459202
2017-11-06Rollback commented linesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2831 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 052a8f264877e7ffa87f8c81abf0f0c83cb60d54
2017-11-06Doc review : dimension() method documentation can not mention ↵vrouvrea
lower_upper_bound_dimension as it is a private method. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2830 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fec09d2a0b0f896c848a13c54d21625d08efc997
2017-11-06doc review : upper_bond_dimension to be replaced with upper_bound_dimensionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2829 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ca70d79176d406f63c3372dd7e062f108365b99f
2017-11-03AWWWR.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2828 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d605b5fff9671e8b116dd02d4ad7a23f4d146589
2017-11-03typos correctionpdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2827 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34205dffeba4c230a6a4649b255753aba21a1ac1
2017-11-03Fix, Vincent's comments/pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2826 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 892039f1a6c110f83051883bc635d8429d3a94ef
2017-11-03Vincent's comments fixed.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2825 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d5478a89511fc9636559dde3d140ef26f69091db
2017-11-03remove trunk from branchpdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2824 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 264cff4aa131c60b455e7d8bd468b001a703ece4
2017-11-01Fixing Marc's comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2822 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9349d7b76ee2301c2554480f33af0a395451a9a9
2017-11-01Bug fixed.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2821 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5816f9d7ca51a30c5f64dc7cd58f40ffc157917
2017-10-28A new branch to fx the bug with periodic cubical complexes.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2817 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9e38b173739b9ed91a149b72d6150200bd3e425c
2017-10-28A new branch to fx the bug with periodic cubical complexes.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_cubical_complex_fix@2816 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d078036509b7af4206fc97a815ec19ac7b9bef3c
2017-10-26Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2811 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a37c02ca51d0df28a981207db6ecc1bd0991ffa
2017-10-26Code review: downgrade_dimension renamed lower_upper_bound_dimension and ↵vrouvrea
make it private. Automatically when dimension_to_be_lowered_ is set (on removal) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2810 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c764433bcc5357acc6454683d4f4182c7c960d6d
2017-10-26Fix sentencecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2807 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8d914e747993fc8c1883ee6c0807c3335c816a3e
2017-10-26Cancel the move of Garland_heckbert.cpp & cocjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2806 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a3df461085b25b301ea52fcdefecd8d17903e211
2017-10-20Use simplices iterator instead of skeleton iteratorvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2798 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 856d2655901b01dd3e75f428f364ab7ac4f07aee
2017-10-20Code review : rename automatic_dimension_set with downgrade_dimensionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2796 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3b094bc579367d40790c3791f2c4a3700a3d93ae
2017-10-20Doc review: remove_maximal_simplex about automatic_dimension_set mechanism ↵vrouvrea
was too strict. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2795 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0226b3ee6a082b109185c9eff8c1601b61d4f667
2017-10-19Code review : remove template specification for std::maxvrouvrea
Fix cython tests accordingly to the other modifications git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2794 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e1009a3304455fa26fbd368c4cce4451bc3d7784
2017-10-10Fix tests and homogenize codevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2775 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bdcc278981e2683a5b49f241f07704f3d5c7ca4e
2017-10-10Fix CGAL 4.11 bug and remove old_interface file. Better done with #ifvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2774 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9a905b04cfa2718f9d5abc80e14ab1ee26d16279
2017-10-05Doc review : automatic_dimension_set return documentation was not clearvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2761 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 04b4dee9d228923f36062001529476251eac4ef0
2017-10-05Doc review : prune_above_filtration about automatic_dimension_set mechanism ↵vrouvrea
was too strict. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2760 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bccef80ba3f70f87dff28cfa3a85c50f072f695e
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