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2018-08-16Bug fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3788 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d8b898ca963d8d956307bb1dfd8abea1acbe6c96
2018-08-16Code review : Try to import module. Functions are unavailable if not available.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3785 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 53c89a30f7992aa8d20e8330628c03291cea6473
2018-08-13Clarify installation, utilities and examples generationvrouvrea
Add a link to the Hello GUDHI World project git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3776 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bb4dea879baac0280b38ee7ab9f466e0c090a38c
2018-08-13Modify GUDHIConfig.cmake in order to have :vrouvrea
Order is : 1. user defined GUDHI_INCLUDE_DIRS 2. ${CMAKE_SOURCE_DIR}/include => Where the 'cmake' has been done 3. ${CMAKE_INSTALL_PREFIX}/include => Where the 'make install' has been performed git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3775 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 506357257ce261cb2778e357ca902401da4838e7
2018-08-09Make human.off copyright clearervrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3766 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6d79fe7a1d0892476e70fd255a7cd0cef0d08823
2018-08-09Copyright clarification for human.off filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3765 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b3da155682259c8df1cabb587c8d60c79c75cdc9
2018-08-09GUDHI_CAN_USE_CXX11_THREAD_LOCAL was missing in ↵vrouvrea
Persistent_cohomology::annotation_of_the_boundary git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3764 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d53de701470203e48f76896e2859d1df670564c
2018-08-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3763 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 96af633598ea1efa65ce9b78742628722f469d9e
2018-08-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3761 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7aa4e82e8f90c54c9c6b58e6da5e2ed32a87deb0
2018-08-09Merge ninja_cmake_warning_fix_vincent branchvrouvrea
Fix issues #4, 6, 13, 14, 15, 21 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3760 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32b5cc470f6095a64f102e0e641e13d2fc9d63ff
2018-08-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3759 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f3867c19d9a559dc8d56c81d6088820acc4ac9c
2018-08-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3758 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2b27ab4042979d62c576b610d75c87695bb0d83a
2018-08-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3757 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f7f31a9a2448c7e894aa63b46360f59bc92f54b3
2018-08-09Make soft dependency for matplotlib and numpy dependenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3756 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 13a2e6e3eea8a36d0b9bdb4ab1c34f940a8932dc
2018-08-08Fix issue #4 : [CMake - global] List all that is missingvrouvrea
#21 : [python - global] Additional information on how GUDHI was compiled could help to debug users problems git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3751 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ded8b49b7e282dbf262df5695f2b5285a9907551
2018-08-07Fix issue #13 : [Global - utilities] use exit(-1) instead of std::abort in ↵vrouvrea
utilities git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3749 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3235f72cc618dcb6ab70b1826a4d3ce2608fa168
2018-08-07Doxyfile is now generated to facilitate gudhi version packaging and new ↵vrouvrea
module process Doxyfile.in generates a build/src/Doxyfile that is copied by the user_version target (to avoid file generation in sources) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3748 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a5ab637c2db102a59c994f03f0ec7fadbda3780
2018-08-07Remove if cmake version in GUDHI_user_version_targetvrouvrea
doxygen target is depending on user_version only if defined (defined in dev version, but not on user version) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3747 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2e9533581d7b9ec231b27b7c405dd3817baf4911
2018-08-06Fix issue #14 : [RipsComplex] max_edge_length documented with type 'int'vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3743 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ef2e20e818fc1c573ce784cd34acb3c6d9970b7
2018-08-06Fix issue #15 : [python - subsampling] sparsify_point_set wrong documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3742 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fcb4ba73cb1c4527a9f772bb9412f5e15c4eafaa
2018-08-03Add SciPy as a dependency in the installation process documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3737 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2d9d2c3f32ba3af5e9565f89e986ac437370b68e
2018-08-03plot persistence density functionnality with its documentationvrouvrea
Fix some documentation issue in other graphiacl tools Add scipy as a dependency git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3736 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6481f1d6aa176bcf587f8875298a91cd22ac0319
2018-08-02Rename branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3730 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ae1d7eb06f34779f69a102551dcc263559eb2bf
2018-08-02A new branch to develop a python function to plot persistence densityvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/plot_persistence_density_vincent@3728 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f216ee7d23d7e961d05849ca1e31c0b3642aaff2
2018-08-02A branch to fix ninja cmake warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix@3727 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 113c5836f058d1ae86d41931bc118c1b9ba4b89d
2018-08-02Fix compilation warning that was a bug. Value was not returned.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3726 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5f1b8b40a1e68c655857ccc7b0de7f86a38c63b8
2018-07-31Fix documentation for CGAL version required by 3d versionvrouvrea
Remove duplicated example (cf. the one in the Simplex tree) Add the example for documentation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3713 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 204f77982c61bc30a6ad3218c82b98f8bb49d711
2018-07-31Add unitary tests and documentationvrouvrea
Fix debug exception mechanism git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3712 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 43f66f3843981ab9cd74c117c2b1c6bb9b94810b
2018-07-22Mark functions as inline.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3699 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 431a0f7e2169ac7ebbdc6e4bd3458176030261ff
2018-07-20First try at interfacing the sparse rips in python. Needs at least ↵glisse
documentation and tests. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3697 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 75bef59e90355853ee24807ca7453c4bb0a38f43
2018-07-20interface the sparse Rips in pythonglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3696 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e7f86d82606404d1fe9631efd068bfad045fa2a
2018-07-04Fix SimplicialComplexForAlpha (dD version)vrouvrea
Write SimplicialComplexForAlpha3d concept Add make_filtration_non_decreasing and prune_above_filtration mechanism for Alpha_complex_3d Write documentation for Alpha_complex_3d ( still missing the user version) Remove exact static bool from Alpha_complex_3d_options mechanism and add some comments on value_from_iterator functions Fix Alpha_complex/utilities/CMakeLists.txt warnings git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3667 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32e15aaf98df14a43eaef4a4af00de2ec418924c
2018-07-03Documentation for Alpha complex 3dvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3664 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c6d824cdab7ac5ea79ce458dac666d35a9a21ab7
2018-07-02Merge python_nerve_gic branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3661 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e69e38e22a478a7f2d6cbb7656c66743baf53a4b
2018-07-02Merge Nerve_GIC modifications from Mathieu (11th of June 2018)vrouvrea
svn merge -r3468:3579 ^/branches/Nerve_GIC git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3659 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9e0e70cccf2829d7d55d241b807aeff0b73094bc
2018-07-02Fix unitary tests after trunk mergevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3658 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 13570cb36f31c353cd8fa58f5b66ac0a00bb0eec
2018-07-02Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3656 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f02e2f3b3e716d6578be49437e7d0b33fa99e5b
2018-06-29clang-format filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3653 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 97cf0cc3bee58b1f7d96a3cfa0f20b0f0a3cb7ec
2018-06-27Fix examples and utilitiesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3645 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 67ac8f8151a85988303c48c9453ee42fecb7a97a
2018-06-26Useless includes removalvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3640 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 57223bb2c3b1ad877d89d8627fbd866a726f2118
2018-06-26weighted_alpha_complex_3d_persistence.cpp using Alpha_complex_3d new modulevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3639 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b7e5f4674a56bef537ba5f4dda62e6605bf8c249
2018-06-26Add insert_simplex in Alpha_complex_3d.hvrouvrea
Modify periodic_alpha_complex_3d_persistence.cpp with new module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3636 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 271e55ce7363a1af991fb107896307887827df65
2018-06-22Compiles run and tests for Alpha_3d, exact, weighted, periodic and weighted ↵vrouvrea
periodic git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3627 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e24d7de108d3e77eaf6319a8165a7c65bec57884
2018-06-22Use unique_ptr to store cgal alpha_shapes_3. Required for not objects_ to be ↵vrouvrea
freed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3626 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6dc9bbe25757a1a7bef2178ef63876c20d3a38b1
2018-06-19First create_complex versionvrouvrea
weighted periodic option git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3624 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d22e307b12aac1390593541f77cabcccffbc6ad
2018-06-18Add periodic 3d Alpha shapesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3622 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a97b603cf83c5f9a80404dd5786896e51015ee08
2018-06-18Separate options from codevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3621 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d72667f205e03d652c67aa0b4e2546a483c02fb1
2018-06-15Weighted, normal and exact version of Alpha_shapes_3vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3618 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1b2014fe34b3e7814d9c3d02881c63e10f047b2
2018-06-14A new branch to develop a new module Alpha complex specific for 3dvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3617 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ca72ceeb65071eb322ce080432938adca273c53c
2018-06-14css for https version of the website must be in a valid https locationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3616 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a85178a0299c744e26b7a98e92c515d9a721039
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