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2020-04-13Generalize enable_autodiff to more implementationsMarc Glisse
Still limited to L^p
2020-04-13Fix NaN gradient with pytorchMarc Glisse
2020-04-13Small autodiff tweaksMarc Glisse
2020-04-13enable_autodiff with keopsMarc Glisse
This doesn't seem like the best way to handle it, we may want to handle it like a wrapper that gets the indices from knn (whatever backend) and then computes the distances.
2020-04-12Parallelize the "precomputed" case of knnMarc Glisse
It is supposed to be possible to compile numpy with openmp, but it looks like it isn't done in any of the usual packages. It may be possible to refactor that code so there is less redundancy.
2020-04-11Use longer namesMarc Glisse
2020-04-07Document dependencies for building the docMarc Glisse
2020-04-06Merge pull request #167 from tlacombe/wbary-theoMarc Glisse
Wbary theo
2020-04-06Remove trailing whitespaceMarc Glisse
2020-04-06Merge remote-tracking branch 'upstream/master' into wbary-theoMarc Glisse
2020-04-06Use compute_persistence in an exampleMarc Glisse
2020-04-06compute_persistence for cubicalMarc Glisse
2020-04-05Proper exception in write_output_diagramMarc Glisse
2020-04-05compute_persistence in pythonMarc Glisse
Also simplify references, and replace print with assert for errors
2020-04-04Merge pull request #275 from mglisse/biblioMarc Glisse
Improve local bibliographies in python
2020-04-04Missing biblio in one file, change title levelMarc Glisse
2020-04-04Merge pull request #271 from tlacombe/patch-1Vincent Rouvreau
Update next_release.md
2020-04-04Revert "sphinx label warnings"Marc Glisse
This reverts commit d9e6b4f51bc8517453653be2904ab6db9aaab85e. It was able to remove the warnings about duplicate labels, but then it shows [WA1] instead of [1] in the generated doc. And for things cited on multiple pages, it uses the same everywhere, so on a single page, you can have a mix of [I1], [WI2], etc. Not very pretty.
2020-04-04sphinx label warningsMarc Glisse
2020-04-04Local bibliographies in sphinxMarc Glisse
2020-04-03Simplify some codeMarc Glisse
2020-04-03Dead codeMarc Glisse
2020-04-03Split compute_persistence from get_persistence.Marc Glisse
2020-04-03removed the print of energy in verbose mode, added by errortlacombe
2020-04-03rollbackROUVREAU Vincent
2020-04-03openssl issue with pipROUVREAU Vincent
2020-04-02Update next_release.mdThéo Lacombe
2020-04-01improved doc, adding double quot for inittlacombe
2020-04-01improved doc readabilitytlacombe
2020-04-01Split the cache per dimensionMarc Glisse
Try to reduce slightly the memory use.
2020-04-01improved doc, turns Basic examples as subsections using *tlacombe
2020-04-01code review: use operator[] instead of at()ROUVREAU Vincent
2020-03-31correction typo user.rsttlacombe
2020-03-31update CMakeLists to make things compatible with wasserstein/ repotlacombe
2020-03-31created wasserstein repotlacombe
2020-03-31changed import to import gudhi.barycenter as barycentertlacombe
2020-03-31micro modif changed a word to avoid repetitiontlacombe
2020-03-31merged mastertlacombe
2020-03-31changed into import .barycenter for local import in wasserstein, and ↵tlacombe
modified index to remove barycenter doc
2020-03-31removed unused importtlacombe
2020-03-31modified import in test to get consistent with gudhi.wasserstein.barycentertlacombe
2020-03-31added import barycenter on top of the file so that we can call for ↵tlacombe
gudhi.wasserstein.barycenter
2020-03-31removed barycenters specific doc files as those are included in wasserstein ↵tlacombe
distance now
2020-03-31merged doc from barycenters to wasserstein distancetlacombe
2020-03-31added Turner 2014 Frechet in the bibliographytlacombe
2020-03-30Streamline initialize_filtrationMarc Glisse
2020-03-30Merge pull request #215 from MathieuCarriere/extended_persistenceMarc Glisse
Extended persistence
2020-03-30One more ref, to be cited laterMarc Glisse
2020-03-30BiblioMarc Glisse
2020-03-28Default param of 2 for DTMMarc Glisse
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