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2016-12-12Fix euclidean_distance in accordance with peer reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1851 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 998c4f281a90842d598f3fe840a8526865ff9830
2016-12-08replace euclidean_distance with a class Euclidean_distance containing an ↵vrouvrea
operator() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1840 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b1619401ac0ef978257709c5deeb7e19fbcff32c
2016-12-08Remove inline from read_graph (now inline)vrouvrea
Remove Edge_t template (not needed) Add documentation on template params git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1839 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a011b11cddf1a20e29743e6b170dac054ac79c12
2016-11-23Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1771 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 994e3bf769d236d230ac2f7e751aa310dabb74bb
2016-11-22Add rips distance matrix example to be more visible in the docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1769 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 921a2702188a587c93600440a7e5cee675a8cd63
2016-11-22Add distance matrix Unitary testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1768 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 566a69cf00976360c07084ce5df48fcc02f6653f
2016-11-22Fix examples and testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1767 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a1c78aec05d443e0525bf24a0cc7f7b5c628629
2016-11-21Add distance matrix rips construction (doc, code, test)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1766 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b9bdecbaf0aca12facb023e66bdea71e8e8cd38
2016-11-21Add distance matrix reader test casesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1763 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cae9765c56ff6e0a213a7835bab56f3618e4d942
2016-11-18Add distance matrix read from csv filesvrouvrea
Distance template instead of Point_d for distance matrices git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1762 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 695bead714228c57e1be1650048125aa0b841683
2016-11-17Merge rips_complex_module branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1759 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0c66037752bc8d5b65729722ef117e13ab8137bf
2016-11-17A new banch to merge rips_distance_matrix with rips_complex_modulevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1758 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3485cabd63a32ee06ff1e1066483a0f15db138ec
2016-11-17Modify examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1757 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b6f26947ad16f440ea4d4b7cb5e145a58f28dcb
2016-11-17Modify Bibtex after reviewed by Siargeyvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1756 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 623867e42aa12d484929e415a06ed8cd3b5ba06c
2016-11-16Merged last trunk modificationsvrouvrea
Make Witness compile and test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1755 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e6eec55ac0a4cc66da3bb081a222cae5b998c1cf
2016-10-14Fix Alpha complex UT for limit casevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1727 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c5c93e0a4d78fc2441de966aebac72ba9419da8
2016-10-13This test fails on Win 32 and 64vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1726 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3f5820af954fb6185d938b3e67bc533954b41f7f
2016-10-13Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1725 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d56056e39c28b013ef71b87aae055502bd86314e
2016-10-13Add CGAL::Identity_property_map proper include. Was not working with CGAL < 4.9vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1718 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8a42c2cfe003e18066f49e526048c020da8d7269
2016-10-12Merge alpha_complex_create_complex branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1716 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ad47d844b62b64ef59a493676c1aa494f2c574c
2016-10-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1715 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 68b171b536522a45c4304e40bafe11d08c8921dd
2016-10-12Using a pointer as a property map is deprecated in boost. Fixes the reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1714 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09c2eb41ce80813afb950e5712e5aefa5c6bfd34
2016-10-11CMake message modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1705 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cc129ae74df9da178e781bc05fe612cc34a282ed
2016-10-11Fix doxygen warningvrouvrea
CMake message fix CMake test tangential examples git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1704 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: efa3c76e767d6ba55367b57c10ab87844c968457
2016-10-11Merge of tangential_integration branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1703 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2134d8e5a61287a89e3e6c0bc9766f9c2abc405e
2016-10-11Problem of merge with tangentialcomplex branch.vrouvrea
Redo in an integration branch git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tangential_integration@1701 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa029e8e90b3e203ea675f02098ec6fe95596f9f
2016-10-11A branch for tangential complex integrationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tangential_integration@1700 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e0e277b185c5db25264170f82393d1294c88810a
2016-10-08Spatial searcing requires CGAL 4.8.1 at least but cmake can only detect CGAL ↵vrouvrea
4.8 or 4.9 (ecause of a CGAL configuration bug git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1680 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 83b9c75e9fa977a5fbc452a2cc8762f4a1ca32ef
2016-10-06Tests are too longvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1672 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a2c79e443983f4f643b0ab3e21ab5e4fa978e27d
2016-10-06Merge of subsampling_and_spatial_searching branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1671 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a488ac01154e2959916f857e2f95d685496a50c3
2016-10-06cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1668 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b24e2b03fc9a8898f5c3d6bf1cf36a2e60442673
2016-10-06fixcpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1667 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c6974fc881cae681326777d1e6f8bd7f475f235e
2016-10-06fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1663 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 78cab9749df2feaf6d47bf253d4449b043e026e7
2016-10-06Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1662 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 876f5fe1a6a5ecf281837dc86613dff85db65f27
2016-10-06Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1661 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 880ca1a8686938b8ce5f0498848583fa258df4a0
2016-10-06Fix cpplint vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1660 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8a8a944168adfddbf848c122fb9d9cf78b75d36c
2016-10-06Fix cpplint issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1659 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 498d5b8a5c70e2ab78d96f5dad82386a07dad017
2016-10-06Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1653 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3f11061ff76ea31b08bf6560a19e94fb3546f0f8
2016-10-06Add unitary tests in make test targetvrouvrea
Fix doxygen warning fix compilation warning (typedef not used) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1652 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d080543ea90aa089e2f09933a44156f07ae82eb4
2016-10-06<array> is not used anymorecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1651 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20e9d24cb091c436d951b8a396b684a849231bc4
2016-10-06Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1650 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 38704453638793e50aa1432eb4eabd9121cf0a26
2016-10-06Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1649 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7922bc81bedad2be83951857a518edb73f9ca54e
2016-10-05Fix review commentsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1648 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: de0b4f12b6eb814224df13c5cec1069310115efa
2016-10-05Fix UTvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1644 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 66eca6d5355fbdfc100fb74db70328501c6d7feb
2016-10-05Changed unsigned to std::size_tskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1643 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7282a69d4d3bde59727b42b309ddb6b7e1a5a548
2016-10-05Warning FT and include array in 2 filesskachano
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1642 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f25797a941de0f814b2bb1d16a0a3b31cd848282
2016-10-05Fix Windows failed UTvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1641 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a85234208799a35da37cabcea4704018873cf13f
2016-10-05Merge of off_files_only branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1638 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1892bc92e16add4b4b31947923e428ddbe4385b6
2016-10-05Rename cliques_of_graph with filtered_simplicial_complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/off_files_only@1637 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ca064800d5bab02c0dea01f1cf5b0b6d08755889
2016-10-04Use std::size_t instead of unsignedcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1625 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cfc0013c1247512eb4899809975266a971d57c34
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