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2017-05-31Test bottleneck_read_file_examplecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2490 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dbbce2ac4862dfdd3c01a619bf68120112ab44d5
2017-05-31Add persistence diagram samplescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2489 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bcad955589cbfccdb5f887e409df17a07288c9e4
2017-05-31Check if birth <= deathcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2488 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc7aeca7ca7cd1ec2e9a9263849ec34d4dfa8414
2017-05-31Fix doccjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2487 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7be9a5da2a64835ff7558373e7a754647bc5b663
2017-05-31Typocjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2486 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dcc6134d95dea816a3c54a2a796535f384ccfc54
2017-05-31Fix doc and shorten codecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2485 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 97dcd51c0dc9cef00a655e5e0ad078de752eabe8
2017-05-31Merge from trunkcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2482 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5487cc3f399d42f736ec008f40c4082d51e3f683
2017-05-30Clean-upcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2474 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9586b4987dad745fa60bca1a433349a2f78fa9bd
2017-05-30Remove debug codecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2473 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 458dcfcf18b36f8dd0023dfe5af0d6083d1c7684
2017-05-30Merge cmake_modules_for_gudhi branch in trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2469 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a7ae351317d741b2657b0fcde335393fbdfc1630
2017-05-30Merge last trunk modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2468 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0fc91d24907c2259fba5b7bb7d3f870ea1a68d9e
2017-05-30Make install examples mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2467 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 018b6e55c392b37d02503e7822e0a586061c987d
2017-05-30Add a warningvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2465 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a873c9c6fff031968747c3dec197aec06738c32a
2017-05-29Add 2 new variants of read_persistence_diagram_from_filecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2463 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bd0dd2c981856c8e1a51b2b97ac10d9edd59f694
2017-05-23read_persistence_diagram_from_file now uses an output iteratorcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2455 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3969666dcde3581a75789c5a4b62817dea553f9f
2017-05-19Move src/common/utilities/hypergenerator.cpp in src/common/utilitiesvrouvrea
Management of Python distribution packages make install is now installing utilities and GUDHI python module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2453 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a85576c7ae062718900f0db2bfb0dd3f26e87177
2017-05-19Remove DEBUG_TRACEScjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2446 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2290435a73db6bea9297fa79e10f7e36be10a43e
2017-05-18Modify the way cmake handles utilities, examples, test and benchmarks with ↵vrouvrea
new options to activate/desactivate them. Move hypergenerator as a common utility. Move random point generation from hypergenerator in src/common/include/gudhi/random_point_generators.h git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2442 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2d13e4b0c09455fb604b684f6d71530352271eb
2017-05-17This branch is to develop modules in order to simplify and factorize GUDHI CMakevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2441 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 184e041ce8e7f5687076b28a91e57490eb6c8576
2017-05-16Use read_persistence_diagram_from_file in this examplecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2440 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cb5cbba3f968c6cd16025250076bbe1df4f2e11a
2017-05-16Add read_persistence_diagram_from_filecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2439 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 026fbb0528343a15a46935ded3aaf13297afeff5
2017-05-16git-svn-id: ↵cjamin
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2438 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 928b03076f7a40e4d9b09e663e618fdba2d89e57
2017-05-16Merge doxygen_using_mathjax branch with a local copy of MathJax.jsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2434 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9c6260d7b0f91420f0b3dc71d0ba04a422937b86
2017-05-16Modify Doxyfile to make it work with distributed MathJax.jsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2433 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 386ef39799695204b98d43b5a2f36a1a9e91f04e
2017-05-16Add MathJax for distributionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2432 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c0f73996dfdfe217ae2dfc2250e7866d680ae1f7
2017-05-15Merge of the branch for Doxygen to use MathJax.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2429 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7606538aabea730e4cef25c451a9db2041b84c61
2017-05-15Use MATHJAX for doxygen documentation generation.vrouvrea
Fix pseudo code for alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2428 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 05ce587c4ba46e164dad02766cbaca40373e3ad8
2017-05-15Add GPL copyright to the software used to generate the data.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2427 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3aa8a0a8847b57db28ec26a38af72abf3bf509ad
2017-05-15A branch to modify Doxyfile to use Mathjax instead of image generation from ↵vrouvrea
latex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2417 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 66af4706071ec8570f38cc11ecde6957370b1df2
2017-05-09Fix Windows python module compilationvrouvrea
rips_complex_diagram_persistence_from_distance_matrix_file_example.py shall use csv_file instead of off_file git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2409 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b73613ce923e4bb72f5eae110cf290dc2215994d
2017-05-09Doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2407 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59aa4cbeef583b93f5e0e4416a4cd2903643d8f0
2017-05-02typosglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2392 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6f20690dcf711382a244eef6ce6eccab76315710
2017-04-26Fix warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2381 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: db27facc0c7eec7c48233648c6df4a47f9e09697
2017-04-24Remove unused variablescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2379 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 90fd2f0b1fe4ff48e5ba0ee69db76bed60906ec1
2017-04-24Make compilation and tests out of sourcevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2376 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0bc362b7321ed22af0c20f020eafc98efecbac46
2017-04-24Doc typovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2375 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 181a2d688b3333b202aa7a25768413259c6c8fbd
2017-04-19Fix doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2368 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa8997eb2c66b9b25206688acc5819f2ded0e985
2017-04-19Merge add_test_windows branch to fix add_testvrouvrea
Fix a biblio doxygen warning git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2365 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 72a9180aa6be56fca0b5f357247300df17770159
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-18Rename CMake testsvrouvrea
Add specific GUDHI test coverage function Rename cmake/modules/GUDHI_*.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2362 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 071b1eda7d11b1781a9601a013b88a0b2a9b7bf7
2017-04-18A branch to test add_test CMake function for Windows fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2361 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5aa4461a836552f27e27a3a5204ac77a5a74d97a
2017-04-14Fix doc level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2359 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8c141f6c040abcbf76f8eec21b14389ae850318
2017-04-14Remove scripts/generate_version.sh, use make user_versionvrouvrea
Remove GUDHIVersion.cmake.in (was for scripts/generate_version.sh) and CMakeLists.txt mechanism Modify src/Bitmap_cubical_complex/example/CMakeLists.txt to generate files in build directory git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2358 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32c73be6aa9a0a6fcfde09ebf21ff38d48abf5e0
2017-04-14Fix doc level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2357 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2da8fae99b18cf215de376980266f1281ac95172
2017-04-14Fix Title level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2356 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 755e450afddf28f87164a8f1f22c1f58faf9658a
2017-04-14Fix Sphinx and unitary tests issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2354 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7852df8e3fcea5b0b7f37f79f2b8b34cfd1db62c
2017-04-14Fix cython find issue on Windowsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2350 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b539887838ff48d211ee65f8fddaf53500eb84ea
2017-04-14Try of a fix for Windows cython find mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2347 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4c93e7042d79bfea7c758e726f6393b97334c798
2017-04-14Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2346 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 29b4678c6e1ecaec8c43fc68a36aa988ddcbf298
2017-04-12Merge of bottleneck-glisse branch to speed up bottleneck computationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2335 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 164b0e8de1d89e5b056dd01e63d5cb6dae6c67e1