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2017-01-26git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2017 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 734dc64ee7916048c83805e2a0ce5cc471db59f2
2017-01-26git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2016 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2f1fd2175eacc1c85a3c28ec5cccedb7e898fded
2017-01-26git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2015 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fdaf0e66eaae7539080af7bada668f32e7ae1dc0
2017-01-24added headers and examples for Nerve GICmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2002 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 587a3e6748bb2b7313dbd1bd4e81c4a3b01a5efc
2017-01-24Edit CMake and Doxy filesmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2001 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cea2ab8fcf5f06109432c74f3433fdbc0f90c5a9
2017-01-24Creating new branch for nerve and GIC computationmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2000 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8e0e06b2a027e3ac7e86c18f24f6b422feeee907
2017-01-24Merge Alpha Rips persistence bottleneck distance example and its test in ↵vrouvrea
cmake from bottleneck_misc_fixes branch git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1997 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a632080c18c119e4fcff9a626e2552c54cf57880
2017-01-24Add Alpha Rips persistence bottleneck distance example and its test in cmakevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1996 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 30c7f3c253730ea8384ae143a629e9b22ef6d507
2017-01-24Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1994 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f0adf9d7d1be7f0cb85f1ff2d0e41295d6e9ae0
2017-01-24Remove utils for bottleneckvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1993 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2bcefc9c6c59f7fae41306c7dfd844942ad5ccff
2017-01-24Moved from utils to examplevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1992 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: efa6dbfb45341eae13cd0cc3b050e45174596cab
2017-01-24Last modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1991 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e7e28db5a3f79ba5f65f4a3c025d23703638362
2017-01-24Bottleneck does not require Eigen3vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1990 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b04a823f288760750f9146c7b88211c56f4d4f22
2017-01-23Add an util to compute bottleneck distance between the alpha and a ripsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1984 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d036fa6129f4ee326335787ed2968f505c5bb276
2017-01-20Merge qt5 branch for GudhUI tompile wit qt5 instead of qt4vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1977 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc3a76decfb432227892bd231c1080577c6ac06e
2017-01-20Merge last trunk modifications in qt5 branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/qt5@1976 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7f8c5b9443bf0996347fe459fe21c42a2fed0cca
2017-01-20Merge bottleneck_misc_fixes branch to fix bottleneck cpplint issue and ↵vrouvrea
doxygen warning git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1974 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8704c1ff42c8e0f78ba2e70d83b71c91b3274a0
2017-01-20Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1973 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e96278cb0c55788b6aa78fa4a52dae7197b09adb
2017-01-20cpplint fixesvrouvrea
doxygen warning fixes git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1972 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5b2328016edb6b5b30de668a0488c576d3d92c40
2017-01-20Merge of distance_matrix_in_rips_module development into te trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1969 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 231f9e7c2cea40a751a1c6dc7d544474b2426bc0
2017-01-20Fix code reviewvrouvrea
Remove unused include git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1968 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc983a4be66296869cbeddd66b9d48e25a24b5ef
2017-01-19Branch to fix misc issues (cpplint, doxygen, ...)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1965 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ff6a9104f742f8906b2c19d6101b0538920aefe
2017-01-19Add rips_persistence_step_by_step.cpp in examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1963 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 69ccff62e0c05a1fc38a957dd67a51932a80b9ef
2017-01-19Only OFF filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1961 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 884285c899de8de4495b8372305052137b8448f6
2017-01-19Strange Floating Point Exception : 8 on MacOSX since global type removalvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1958 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e0afcd91aa3b8e166f2ed439a7542934ffe0b1b5
2017-01-19Fix ccplint issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1956 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 01ffb1d403c65a90d081cf17fe8f595c11a34bab
2017-01-17using double for filtration value type instead of float (error on windows)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1942 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 796ab5c933f1d0eb18685a0f2f1626b0fa9aa76b
2017-01-17Add of a rips_persistence example step by step (without Rips_complex module)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1941 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0e1a13775b50d71474ff7317511a4f7f8ceec05b
2017-01-16Remove the usage functions and modified the doc for oneskeletonripspoints ↵vrouvrea
and oneskeletonripsdistance. No added value as distance matrix and points set is hard defined. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1939 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 13142245f95995a13c5bf484a6f8bf5d4bf53b58
2017-01-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1938 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8af39a00b9134dbcc77883412c29d7184479979b
2017-01-07Fix user version for gudhi patchesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1936 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 462555b65b7b3c724a08d11e9b5a2776bf3a1bd8
2017-01-07Fix user version for patchesvrouvrea
Bad include type in CGAL/Orthogonal_incremental_neighbor_search.h git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1935 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1fc3888dd7af8624d3b501b32b76194215e0b7cf
2017-01-06Merge of thread_local_no_static branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1934 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6d7d3fb13b5c480c53b236a502b447902504445c
2017-01-06Test of thread_local solutionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/thread_local_no_static@1932 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1f31ab16d2a086d38d0d019bbdc59152f8e02e7
2017-01-06New branch to test thread_local instead of static solution to be thread safevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/thread_local_no_static@1931 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d4cfc08d836ca43bde9867821478ae2a6ec15402
2017-01-04merge bottleneck_integration branch into the trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1921 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4cf3c3b5f7c82f7a73c04ee025076112f393ef50
2017-01-04Move bottleneck_chrono in benchmarkvrouvrea
Add test in cmake for basic example Move CGAL gudhi patches for bottleneck in dedicated directory Fix cpplint syntax issue git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1920 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 24671facf791de93dc6fd94bb39ca7362bb22959
2017-01-04Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1919 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1dc74b80bb4ad02dd49664f6d703abd4b304e4ec
2016-12-16Fix cppcheck warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1907 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa45fd8721733a07c8d218930e545ee590788de5
2016-12-16Fix cppcheck warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1906 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: abb0875f5cfe3b3d0ce738257efc3f4c0fb57adc
2016-12-16Warning fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1905 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7b7222ebe65fd01fde30f8ba527ebaee633fc87e
2016-12-16merge trunkfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1904 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aaea6ba58156f8c35f80674834520220891fc32e
2016-12-16git-svn-id: ↵fgodi
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1903 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ab471ba8c17c17d4e52a5eaccb19ea36c5f278c8
2016-12-16Fix cpplint and warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1902 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 24c5aacf579eb1ceb35c680770d5168524c4c84b
2016-12-16Doc modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1901 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 503d38af6ee04b19ffc2feec6ee2bfd05429e9ef
2016-12-16small modificationsfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1900 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 31538228069cb6ef867be8aac231f11b5c8689f6
2016-12-16small modifications (doc)fgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1899 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e1a9e88af05611d3572830a719ca9ee0d042144e
2016-12-16intro documentationfgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1898 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2aae46574350bb2240f83e183d471965c933fe0b
2016-12-16modifs donefgodi
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1897 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1c2ac9389d5da7556a5c47e90c68572ae97450b
2016-12-16Fix persistence rips after create_complex voidificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1896 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d4a1258ea01bae048f30621594d0daf280fd8abb