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2016-10-03Fix euclidean distance for ripsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1610 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a07dfd4ffe3f17bf242ffb5b57058e99171a8016
2016-09-30Fix compilation issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1596 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 343308ef914e6a6617890f49a55eb0bb8db15ee9
2016-09-29Fix doxygenvrouvrea
Add tests git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1589 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3b03e969f43f4f41c7bca1b2de96a71688475742
2016-09-29rename filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1588 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1d94b1a511d11cdb824bc3f4fbe58f365bb772bf
2016-09-29New example and texts for docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1587 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 332335f6f101f08e246b35de6e3a84c2348fd4ee
2016-09-28Add rips complex module and first modification stepvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1577 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc949570c6cffa4756f84a15c41fadc8c45b2af2
2016-09-26Add a new module for rips complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1560 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a535fdcfc1975d4d8a79f4ba1666041a533a445
2016-09-23Fix doxygen warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1551 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 309e1612aa82a9aac11e160be6f89abbd751fd1c
2016-09-23Fix doxygen warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1550 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 39ef2513b5d84cb392677ba10718f5e47734884c
2016-09-23Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1549 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ba0a3fe924d24dafc07f3ad5fe71bdd9fee637c2
2016-09-22Fix a bug on gcc 4.2.1vrouvrea
reference to non-static member function must be called git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1544 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c5fdb03806241da2d7b0a92b73deb36791f74320
2016-09-21Modify test that is not working under Windowsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1525 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0f9eca7c8a11b7578fe9cb5acf3097e704288c2d
2016-09-19Merge of warning_fix branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1512 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8fd75ab3cb6a02013df18f6d5048755d39524b70
2016-09-19use of std::vector for unitary test instead of CGAL points typevrouvrea
rename unitary test as stands in convention git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1511 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b768b5a6bb0fe823abe6cbbea28d49c7ecb39a9d
2016-09-19Rename off file reader as stands in convention.vrouvrea
Add an example with a vector of double for point type. Fix SO3 OFF files accordingly to OFF file standard. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1510 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff61bed1f1895bc5bf1af4ae946e2a84a692c390
2016-09-19Don't know why this test fails on win64 : assertion failed vector iterator ↵vrouvrea
not incrementable Workaround git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4e29928ca7198b9c98aee8d961900910d51cd5f3
2016-09-16No more need of Test.hvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1508 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a0436136ab366116b61d0630a3da2b6407291db9
2016-09-16Rename tests according to conventions.vrouvrea
Add xml UT generation for the Boost tests git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1507 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 17a39f49058182586307f13511f78201ef2615dd
2016-09-16Rewrite tests wit BOOST testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1506 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5afe034e18381c4921987457fd75f15c21b3aed1
2016-09-15remove concept dir for Contraction (empty)vrouvrea
remove unused using namespace git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1505 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32785bb7a8062d828069f22b0d410afa3e57f702
2016-09-15fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1504 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b0036e77dafec3301dd9f130265e1513a82cddf4
2016-09-15Fix cpplint warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1503 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b4e1ec1b6cc95a6a7207e68fb31e064c0e3bd065
2016-09-15Fix cpplint and warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1502 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: afc7d137b66225954ebfe37a823f1f0b6bcfe7a5
2016-09-15A new branch to fix some annoying warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1499 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2265e63148bd798f123428e29b48d932e06500cd
2016-09-14-Wsign-compare is included into -Wallvrouvrea
-pedantic is recognized by icpc (and also gcc and clang) unlike -Wpedantic git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1494 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ad63e46a4e077bc4e16852eb0cb443db7c5197d
2016-09-12Gudhi 1.3.1 in Doxyfilevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1490 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5a84ac81c1bac977c8bbf4551e0ab626b64fece
2016-09-12Patch for 3 billions of simplices patch version 1.3.1vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1489 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fb2001dd4d754de5623ac3c0f45b965f258eb291
2016-09-12Intro_simplex_tree.h for filtered complexes module documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1488 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9dfa3d056b4216efe02c8cb0323bdd8805b2756
2016-09-12Modify filtered complexes sections and examples.vrouvrea
Modify persistence sections and examples git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1487 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b0bdc7199f7229ac152175c4cbc6ebd79c9bc67
2016-09-09isnan must be preceeded by std::vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1486 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94adb015da0957f3b4ce3f5742f9cb0cf57b6284
2016-09-09Merge 3 billions of simplices bug fix into the trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1485 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 837260d9c45b827e3bcf5cea6bf8164760e24844
2016-09-09Add a comment for assert that explains null_key mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1484 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 12246383db2c71ce36d03e5702180605459e6fe3
2016-09-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1483 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1eafe2e93f1fc3a2780d9452aae1981481786f95
2016-09-09merge make_user_version branchvrouvrea
Commit of new doxygen header with "They are talking about us" section. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1482 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44a65247177c6f2c72bbbebd88042aa036c26bb2
2016-09-08Add doxygen target for user and developper version.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1481 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b76661a6d3e91508ffa21f1e183a5e822f6a92bf
2016-09-08Make directory fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1480 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8515623b6556f183d849ea1ec6e667d23afeff2
2016-09-07Add GUDHI user_version target to replace generate_version.shvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1479 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b41a86ec3bed234b8fa1988b48de058ab501c392
2016-09-07New branch to remove generate_version script and to add a custom cmake ↵vrouvrea
target to make user_version git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1478 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a47a3dfdf66e24570f32cbbbc8df2e8626a3dfe2
2016-08-25Add a comment on MiniSTOption Simplex_key type definition about the maximum ↵vrouvrea
to be reached git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1456 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 476838c17d5f6e8745661ee0a67295ce65828f43
2016-08-25Modify the comment about uint_8 -> max is 255vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1455 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ca626c7d0f4a690587946bf7b9e4d31c8effc23
2016-08-25Modify SimpleyKey, SimplexTreeOptions concept and SimplexTree documentation ↵vrouvrea
about Simplex_key type (can be signed or unsigned). git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1454 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 562aadf6d7491ea7f7144a3394dc78bdabc9e9f1
2016-08-25Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1453 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fe9826c9e59a9252b51a5fa204d3e87e087281d8
2016-08-22Clarify installation documentation by separating in a section optional cotsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1446 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c5a0544148248f16f03c888b2e8598bc2076a9e
2016-08-05bad tag termination for doxygenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1421 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7665d06c502a1ed93d87d0393e630083e34bc846
2016-08-05Fix the 3 billions of simplices limitvrouvrea
Add some comment and documentation about the new limit (4 billions) Rephrase third party library installation documentation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1420 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95b20677e455b61578da74aabbd3764b4a27816d
2016-08-05With the good include cstdvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1419 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 864b9995ec8675e1578bccf81126959a4a5a22c4
2016-08-05Modify plain_homology to show a Simplex_key type modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1418 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9d9c99b8d8acd8a6fdbfe09601ffe6826ca04857
2016-08-05A branch to fix the 3 billions of simplices bugvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1416 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0718c287f3b538e56832bad09016bed86e643e21
2016-08-04Make GUDHI Cmake less verbose on CGAL package findingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1415 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2eebce43b0f75ab1cef3a2fe6f2c1bd0b38672a9
2016-07-01Merge of branch eigen3_cmake_factorizationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1379 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d59540faacaa815127c5f42e4aec2bdb5b3caf92