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2017-12-17Branch for the next round of cleanups.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3077 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 53efa362b17ba2d4da748932bca2958af3af0268
2017-12-16Allow constant input in choose_n_farthest_points.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3075 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e3e6f9f0fe4e0cc0e4062984cc8ba08e99c1528f
2017-12-14Merge of branch misc-glissevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3074 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d0842416dbf4ee1ff25a7421841efe8f097e5379
2017-12-14Version numbersvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3073 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 38b84cada057e433d09aaf987b0d495e86e19962
2017-12-14Forgottenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3072 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7a6ef2d5fd72f53a396464bba4035f5610552c9b
2017-12-14Add cmake improvement for Persistence representation module.vrouvrea
Was bad tested and too hard to maintain git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3071 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa4684701edbe6d172e75f119afa912eb3b5dad7
2017-12-09Doc review: bad example link for euclidean strong witness Python examplevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3063 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 16af7cb7d034eb3ca17ecd037f97e6d4d44e3d54
2017-12-09CMake modification strategy as it was quite painful to maintain all these ↵vrouvrea
utilities git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3062 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c0eae764abe5c7076ae59027eeab2a7ad451463c
2017-12-09A branch to improve CMake for persistence representationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3061 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2cd629081bfa76b4da2696245e433a0ae0ee11b4
2017-12-08File formats for iso cuboid and perseus in the Python versionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3057 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6eb0a025d8549320e03727ce491563b2a941c82d
2017-12-06Fix precision error bugvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3047 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1fb36cb9f658b53aaa5844c24eef404556003fd
2017-12-06Add traces for debugvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3046 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d9319e590a5e2acdec0c1bce0698ac32aeb857a2
2017-12-06Merge C++ version of persistence representationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3044 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c7d5d0f584b74dc0dd919e375d170e1998a9744f
2017-12-06Merge C++ version of persistence representationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_bis@3043 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6421c7cbe670fad1a8900ccc0ea6ff32297dd5e7
2017-12-06A branch for C++ persistence representation integrationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_bis@3042 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 349bfb52cad23bab3ec03b025aedb4080630ceea
2017-12-06Merge add_utils_in_gudhi_v2 branch after 2nd round of reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3041 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ad134cc2b6756e20afc8d9db9e40c5af87d09f9d
2017-12-06Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3040 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 69ddae02dd1005b5ded5d4e0127a9eaa7081f5d6
2017-12-05Code review fix and std::size_tvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3039 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2ef03e413290c9f5ae0396a613b963d64e827a07
2017-12-05After fix code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3038 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 07971bb9211bdfd340c0525c12610bbcf3897951
2017-12-05Fix Perseus read file failed casesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3032 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 397a6316814d3214b0f39ab1249b48100fb995ee
2017-12-02Don't return 'const int', that's equivalent to int and causes a warning.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3018 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bbefd89e01293f0d34645979318d745b683cd769
2017-12-02Copy insert_simplex_and_subfaces from the gforge TODO, updated to set the ↵glisse
dimension. Passes the testsuite. Not benchmarked yet. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST-insert@3017 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a1abbf9d60d14129431f9152a43d2d6d69a647d
2017-12-02Branch to rewrite Simplex_tree::insert_simplex_and_subfacesglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST-insert@3016 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d537c84b6dd8c7a4b64d2a7c7f78b24ce63f18b5
2017-12-02remove dead variable max_dimglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3011 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: efdeef33160a5a0d8c033ff5b049ee6907d84671
2017-12-02Cleanup checks in Simplex_treeglisse
Rewrite GUDHi_CHECK so we don't get nasty surprises with: if(cond) GUDHI_CHECK(...) else ... where the else would have been matched with the if in GUDHI_CHECK. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST-glisse@3010 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1385540710d0079567b7e4566766bd0da53c584
2017-12-02Use contiguous_vertices also for the boundary of segments.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST-glisse@3009 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c341d1b9951a3afbbc5b45f1fe3f7a6e4d7f396e
2017-12-02Branch for minor Simplex_tree improvements.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST-glisse@3008 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2bde65325ec43a7fc31062b1a4118b1950e0480a
2017-12-01Fix cubical periodic cythonizationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3004 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 664770dcae1726b94d4a486c376d1d2f744371eb
2017-11-30python doc clarificationsglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3001 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9dc859e34125fc163c02a32353879b59fff610a7
2017-11-30"This shall not happen": that's what assert is for.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3000 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 072f467bf3086b8e014c54c059f67dbd4f563ad7
2017-11-30Better than vector, static_vector.glisse
Too lazy to change the others, there is way too much code shared between these utilities, we will have to factorize the code when moving it to a module. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@2999 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 92a3d859118619f3a0692f75946c43a4a11f91fc
2017-11-30Typo get_point_cloud retrieves the points, not the triangulation.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@2998 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: acc15d17d9ebf9cb3e64c8c66e756cdd8627d137
2017-11-30rename the_simplex_tree which represents one simplexglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@2996 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fae071018b07c2a3304d14038b6778da0589bf05
2017-11-30No loop for 2 valuesglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@2995 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a0e12ce0db1dfdaf922daa1ed85da4712fd36191
2017-11-30list -> vectorglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@2994 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 336af6c51d9b6ca4d60b2caac02a3f53b02ffda5
2017-11-30remove filtration_maxglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@2993 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 99113f763adb76266bb2dad206bce539076c3f62
2017-11-30remove dim_maxglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@2992 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8d511d55de65a316b2c83a6763c90ef2bc26942f
2017-11-30dead typedefglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@2991 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a314bb92443fc49370a7e12da84713eed7985981
2017-11-30map::insert(pair(a,b)) --> map::emplace(a,b)glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@2990 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae232890c6291e2e381b0d76f21b2a66da2cf9f5
2017-11-30Small optimization for neighbor search in bottleneck.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@2989 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5f13ee7292f8c43a430ee80d27e549ad0d1e938b
2017-11-30Branch for minor patchesglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@2988 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3fb19e8331355da7d3bb91afef6e8a34c6886c27
2017-11-24Merge ST-doc-simplex branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2953 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a2e9879d7374ce337b2be7a445d8f4adce1f332
2017-11-24Update linkcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2952 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 72ac475a06eeb1752e747f2ca8f7c5ae20389cc3
2017-11-24Typoscjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2951 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 87f3b4861218ca91630bba3a83038325636f6dc9
2017-11-24Describe CSV matrix filecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2950 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bfad995548f0336c38da0de9c04f5eeaafd67570
2017-11-24Move Perseus file format to file_formats.hcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2949 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2f0dcf1efdc3c26ff609b7a14d37a604a9c162f
2017-11-24Add linkcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2948 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e41794c0552552f14afe81ead6df3530f02bd388
2017-11-22Add precisionscjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2944 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7017c186aaad9702b72886348e5bfefa5a17160f
2017-11-22b => birth + d => deathcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2943 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ec0292942fcc14c1ef53b8ff9d1182b8f07a287
2017-11-22Rename some utilities + some fix in the doccjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2942 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e7fe4af0f7d54ed580e557fe7ff9bc57ced2baa9
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