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2017-04-21git-svn-id: ↵pdlotko
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2373 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cf3cba466fd55883491a108b47360a768f7bae4e
2017-04-20fising the problems with tests. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2371 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 77267b782ab7fa52172d10d84885a43ec182e436
2017-04-19Fix doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2368 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa8997eb2c66b9b25206688acc5819f2ded0e985
2017-04-19Merge add_test_windows branch to fix add_testvrouvrea
Fix a biblio doxygen warning git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2365 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 72a9180aa6be56fca0b5f357247300df17770159
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-18Trying to solve the problem of missing files for the tests running in ↵pdlotko
different machines than mine. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2363 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52d4aed08bb6fa67119867b830ca8e88f27e5b68
2017-04-18Rename CMake testsvrouvrea
Add specific GUDHI test coverage function Rename cmake/modules/GUDHI_*.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2362 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 071b1eda7d11b1781a9601a013b88a0b2a9b7bf7
2017-04-18A branch to test add_test CMake function for Windows fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2361 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5aa4461a836552f27e27a3a5204ac77a5a74d97a
2017-04-14yet another omp.hpdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2360 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0145b3f91e0f9637957b731d82aeff777f2cc327
2017-04-14Fix doc level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2359 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8c141f6c040abcbf76f8eec21b14389ae850318
2017-04-14Remove scripts/generate_version.sh, use make user_versionvrouvrea
Remove GUDHIVersion.cmake.in (was for scripts/generate_version.sh) and CMakeLists.txt mechanism Modify src/Bitmap_cubical_complex/example/CMakeLists.txt to generate files in build directory git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2358 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32c73be6aa9a0a6fcfde09ebf21ff38d48abf5e0
2017-04-14Fix doc level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2357 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2da8fae99b18cf215de376980266f1281ac95172
2017-04-14Fix Title level inconsistenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2356 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 755e450afddf28f87164a8f1f22c1f58faf9658a
2017-04-14Fix Sphinx and unitary tests issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2354 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7852df8e3fcea5b0b7f37f79f2b8b34cfd1db62c
2017-04-14removing include omp.h from bootstrap.hpdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2353 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: be0d2e4947cae5646d4fbc040efb33c103f3b398
2017-04-14Fix to persistence landscapes. Hopefully it will now compile on osx and ↵pdlotko
Marc's computer git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2352 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: df6c5559ab5edbafc83de84b14c2e771f541b445
2017-04-14another try to fix it on osxpdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2351 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 975486207cf5d63921e0153b61352034cc4b279e
2017-04-14Fix cython find issue on Windowsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2350 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b539887838ff48d211ee65f8fddaf53500eb84ea
2017-04-14adding #include <functional>pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2349 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7877cb936812bfbcac61ba98534628391f64b712
2017-04-14Answer to Vincent's comments. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2348 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 14d2d7d14089c17e4e7949b1f8e46990d0b16181
2017-04-14Try of a fix for Windows cython find mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2347 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4c93e7042d79bfea7c758e726f6393b97334c798
2017-04-14Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2346 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 29b4678c6e1ecaec8c43fc68a36aa988ddcbf298
2017-04-13Answer to Marc's comments (MG5)pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2344 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5d2cd22cb13d74b1ca99892eb8773d8db2e7db2b
2017-04-13Answer to Vincent's comments. At the moment I need to discuss how to correct ↵pdlotko
the doc. At the moment make doxygen generate some errors. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2342 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4bb5c3b30bca852045fb414eacf59936975a3855
2017-04-12a few more correction. First of all, bottleneck distance is added (although ↵pdlotko
there is something strange in the results, FG has been pinged about this). Second of all, all the programs in utylites should now read general files (and dimension of persistence to be read is one of the parameteds of files). This still need to be tested and will be tested soon. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2339 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e60d14f07db223646597230d7f0bd78dd090bc0b
2017-04-12Merge of bottleneck-glisse branch to speed up bottleneck computationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2335 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 164b0e8de1d89e5b056dd01e63d5cb6dae6c67e1
2017-04-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2334 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9461830172c72a205520ae197656c480b1cfcaaf
2017-04-11Fix line length cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2333 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 23035b47dd95c008feb546d7ffb17b96cd7edcfa
2017-04-11Fix some #include ""vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c15320d156c2b928e9eb664a2afed8fa9809e7e
2017-04-11Move Euclidean_distance in Gudhi namespacevrouvrea
Fix cpplints git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2331 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bc5609c2df490db50e82b56a5e6d899dc6370182
2017-04-10Merge branch farthest distancevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2330 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc24c2112694ac41b71a639ccc6da7351afcefc2
2017-04-10Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2329 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ba0fbf37ea8108d8c3ca21162d7cb815a92336f7
2017-04-10Fix and rename test farthestvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2328 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1761bf66bcf6d45f72a051fa9a62c4699e3999d
2017-04-10Merge typo fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2327 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 767718d8f949a7c92212c61dd00225d687c25ead
2017-04-10Typo fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2326 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7c88a0635bdeffc643127106574501ce72645546
2017-04-10Merge code reviews fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2325 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1a35ff8f60aee0bd150db7b571b13a50e843851a
2017-04-10mac osx version is 10.12 and not 10.9 (cf. mail Bertrand Michel)vrouvrea
Add text for Windows Python 3.X installation and forinstallation with several Python installed on the system. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2324 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 939d5d4a94c2430de11b3dcbc29a65aad4bfd885
2017-04-09Merging two functions set_up_values_of_landscapes in persistence landscapes ↵pdlotko
on a grid into one. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2322 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c44a3b5adb393900d5dc6e76faff0a2c6f0bca0e
2017-04-09Answer to Marc's comments. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2321 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4eb08a7ca5664fffd8e683c30871d3fd53d1a551
2017-04-08Answer to Marc's comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2320 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 564683f4a60572ac78f9c45c4cc589d97e7663ed
2017-04-07Answers to Marc's comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2319 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 51b36668541a99c43ad801a9449d7208135f83b7
2017-04-07Adding a new reading method for persistence diagrams.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2318 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dd4dcc3da249ae938674d3bd4db537ac982368c0
2017-04-07Answers to Marc's commentspdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2317 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f941a6b20210282408d0ef95b84daa973add2513
2017-04-07Clarify doc about Squared_distance_d in Subsampling.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/farthest_distance@2315 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5559e1c426569fba1dd4cd350a8697ab7e3260f1
2017-04-06Answer to MG4 comments. pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2314 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e59312ce2c58d4ac19f2e9d46b7ca4dd29ed8e6e
2017-04-06Answering MG3 comments.pdlotko
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2313 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3bae7a55d05831af55a5b1c3e0d2695383af325f
2017-04-05Use an unordered_set for unmatched_in_u instead of an open-coded flat_set.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2312 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 37137a43f781e4646c4149d9528a6a95e1c642be
2017-04-05In Kd_tree::remove, test the point index instead of the coordinates.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck-glisse@2311 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e8d50867d77eea455c34dc5a89ed9e0f45fbeeb7
2017-04-01remove bad named *_tree() functionsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2300 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 512403fe0838fb2691e0af94c55772bff942b740
2017-04-01Merge last trunk modifications and fix new rips interfacevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2299 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e836cba1a372f609e94b66b6db512817a3d875e