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2018-06-13Fix cppcheck issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3601 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44cc04b1609d3b3d40382fd02d4fe15e5ba0159f
2018-06-12Quick fix for infinite loop: drop extra precision in step computation.glisse
I am not saying this is what the code should optimally look like... git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3590 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0253d73afb1b1b565b45d214ea2d948e00c7db25
2018-06-07Fix alpha complex user pseudo code on documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3565 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b4300ef95fac962dd2c4d6a44c5c9f80ca6bc4a
2018-06-07Use release candidate instead of beta tagvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3563 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 85f92deeb18049186357a93f1d746ad2e5570cc0
2018-06-07beta version for Gudhi 2.2.0vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3560 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 470fd4feeb480a415a03d5378f5734fd42f2411a
2018-06-07Code review : Use thread_local when necessaryvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3558 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0893cfa1065dcd9988c9d910e764b7a1edbcdc11
2018-06-07fix Cubical python documentation (no more simplicial references for periodic)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3555 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 198a65222029760e0ff5cd5e576c3281833b307c
2018-06-06Merge of branch thread_local_optional_vincent to take into account XCode < ↵vrouvrea
v.8 as thread local is not available git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3554 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9dcf072a4606d1131a925bca4571f0f1b5547d14
2018-06-06Merge paralellized version of Nerve_GIC fix for CoordGIC from Nerve_GIC branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3552 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 384a6362a19da625b09879ad6eb7573c48a52940
2018-06-06Merge tangential complex warning fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3551 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 252954186a69fa338f79f6e057845e8b5d8a9619
2018-06-06Merge cubical python doc review from python_2.1.0_vincent branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3548 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 143d7407f157a10f4cc5f0fff738bc9dec1e1daf
2018-06-06Doc review : warn about cubical betti numbers function and remove simplicial ↵vrouvrea
references for cubical git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3546 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 41399f9e8aec2ab914368822cd288b1a08839085
2018-06-06Merge of branch python_2.1.0_vincent branch to fix sphinx warnings and issue ↵vrouvrea
with new version of sphinx git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3545 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1bae865ddef6b92c5c3426bbbb8172e876b6d8d2
2018-06-06Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3544 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52665a1261ca785f1afe641c483bd65d28045f62
2018-06-06Fix sphinx warning and issues due to new version of sphinxvrouvrea
Modify the doc for persistence diagram git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3543 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3efbc052bce9a11a6b4a758f8229e91eece2a7f4
2018-06-05Add new layout for documentation website for Doxygen (C++) and sphinx (Python)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3539 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2dc9edea317426fad7a7d99d849145845eb75bb9
2018-06-05Fix warning from branch warning_fix_vincentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3537 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 830cd74dcec65ed8944639732acd9e72d4a19632
2018-06-05Add author name on main pagevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3536 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7fc4d6de9bc65d51f4f0fb263b01a88adcab77d3
2018-05-30Merge branch python_2.1.0_fix_vincentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3496 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d4f09bc2e10151cec21fe3026e8dc1a530d15563
2018-05-30Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3495 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4033114216c767ad4028e3f6d4ccb5f5dfb88f78
2018-05-30Add install requires matplotlib and numpy in setup.pyvrouvrea
Add Python test fail explanation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3494 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1bac18228a22ea718bb8c77d38efdf84f9b228eb
2018-05-29Merge cechcomplex_vincent branch for new Cech complex modulevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3489 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c6c41bed2d00c72f13c6446063323316ee07b315
2018-05-29Clang format filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3488 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d1da847f4c39a191afd5d8e56fe34ee79ade495
2018-05-28Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3479 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95377921626dc6294d4560571023692567db49b7
2018-05-28Code review: ForwardPointRange instead of InputPointRangevrouvrea
Point cloud deep copy git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3478 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 29e77a605f85552bc5b31f2907e26b7e5a9da92f
2018-05-25forgot -inf from patch sent by Marcvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3462 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8e7fe4acb33ee785ef918052f3111d2845542450
2018-05-25Fix bug on Cubical reported by user.vrouvrea
Add test on Python level. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3461 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fffa8df624f81427d0feef6ddc3f8a567aa2d366
2018-05-23Legend in the right bottom cornervrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3453 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 221e39777dd55397a0260a2c83f590db610fdb76
2018-05-23Modify documentation for Simplex_tree make_filtration_non_decreasingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3452 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 304779c7952985d651750aded78cb32c6e583555
2018-05-22Add CMake 3.1 in installation requirements.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3450 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bae61cf108841dae3ff1be5953eb9f87f1713e41
2018-05-22Merge cmake_v3_vincent branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3449 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 42f89daaccbee17bdb44894b1cef781bba64e5df
2018-05-22-pedantic is only for developpersvrouvrea
Bug fix in gudhi_patches mechanism git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3448 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0ecb0da6e6c63733a800a2f30b0f50d2c7e29441
2018-05-18Try once more to clarify what 'keys' do in the FilteredComplex concept.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3447 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59ba4649eb53b4da2b24e4a147196c2a93641aec
2018-05-15Seems to be fixed.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3446 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 01f10ae61484982dc99fd67573d9ca61ffbbec0a
2018-05-15CMake minimal version is now 3.1vrouvrea
Compilation flags are now externalized in cmake/modules Add NO_POLICY_SCOPE for GUDHI_third_parties to fix warnings Try to fix CGAL 4.12 that is no more setting CGAL_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3445 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0ac7613f016e28cc634606f76e85ecaf5bacb2d4
2018-05-14A new branch for cmake v.3 minimum required modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3436 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 991f26241b81af961c308dd3f63284434d87ea5b
2018-05-14Fix CGAL 4.12 build errors - include missingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3435 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59e1e78f26032154a8b81146b0f4d5b4ecead992
2018-05-02Add Python Simplex_tree make_filtration_non_decreasing interface and its testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3409 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a3af66b3d90c6114886e54c5c34287a13f4b863
2018-04-27Remove show_palette_valuesvrouvrea
Add legend flag to display the legend Set rips threshold to 0.3 for users not to be surprised when playing with threshold git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3406 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 03999711eafb81748a82b5725482a9f0d4307861
2018-04-27persistence_graphical_tools documentation clarificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3405 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5b38ba745e20585c35263e2880b8511299e11129
2018-04-27Code and doc review with IFPEN :vrouvrea
plot_*: c'est quoi ce paramètre alpha ? band_boot: Renommer en 'band', sans référence au bootstrap. Ne pas l'utiliser dans la majorité des exemples / tutos. max_plots: mettre une valeur par défaut, pour éviter qu'on se retrouve trop facilement coincé à attendre 1h qu'il affiche des points. Éventuellement afficher un message indiquant que certains points n'ont pas été affichés et comment changer ça. barcode: trier les barres par date de naissance (le faire tout le temps ou avoir une option et le faire par défaut). git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3404 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cfa775e425fbf12da1758d601ccbd80a2c7d3bc9
2018-04-27Merge Copyright clarificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3402 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c24c2226a76df7a6a95d2531e98850c7c19580e1
2018-04-27Merge copyright_clarification_vincent branch in trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3401 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4aac79bc289d93cd77bf712d7efcc3a893ee652c
2018-04-26Fix Copyrightsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/copyright_clarification_vincent@3400 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff348beedf92656c6913c2a1df983b5804b33988
2018-04-26A branch to clarify copyrights - necessary for Debian packagevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/copyright_clarification_vincent@3399 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7c05904320b8e67549719f1de5c852e8edf324ee
2018-04-25persistence_pairs Python versionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3393 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5ee633545ca5754b605cdd789ca9720f5936998a
2018-04-24Fix Python tangential complex versionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3392 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f0d9e008229a6cd7868f4afd11eaf3c566e81adf
2018-04-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3376 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6d1270a8145be1f57d0a597426b550dd9770249f
2018-04-12Add a CMake option in order to use TBB or not. Default is ONvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3375 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fbe41ee9e7771095e34b6c12adbacddf9484f1b1
2018-04-12A new branch to fix some bugs in GUDHI 2.1.0 Python versionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3374 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 30c37e171b1196e670854267be182365d65fd5dd
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