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2018-01-08Merge of branch persistence_representation_integration_cmake_improvementvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3117 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 673143bd16e06d990aeb104a506cfd71f91a8717
2017-12-22data files should not be executableglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3098 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 86e0117c9853753119cccde167a17dc7aa91f954
2017-12-20Merge 1_fold_cover_periodic_alpha_complexes branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3093 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 16709f47787220b4bb4a96936b211c932b03102d
2017-12-14Add cmake improvement for Persistence representation module.vrouvrea
Was bad tested and too hard to maintain git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3071 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa4684701edbe6d172e75f119afa912eb3b5dad7
2017-12-06Merge C++ version of persistence representationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_bis@3043 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6421c7cbe670fad1a8900ccc0ea6ff32297dd5e7
2017-11-16Merge last trunk modificationsvrouvrea
Fix copyright issues Add Nerve_GIC as examples git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2897 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ee046c4c043c7fb76f4b2ad6772229f3a837ae8f
2017-11-07git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2838 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa674c458f110c5c7cc3f5c987b921fcc96e3e7e
2017-10-23git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2801 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1cfabdf6c0eb9cfbbcdc4445438bdcd0b83df8f
2017-10-10Fix tests and homogenize codevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2775 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bdcc278981e2683a5b49f241f07704f3d5c7ca4e
2017-10-09git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2771 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cd87a5b72b67d27b21f765fac822ea69f9496019
2017-10-02Fix weighted periodic alpa complex 3d example testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2748 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ddf754a1f8046c7b17db89668cf8d4dd95f69dac
2017-10-02Fix weighted periodicvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2746 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bf90bfffbc00efe5f391e45ac8ece6ff6e9d57ea
2017-10-02Fix weighted_alpha_complex_3d_persistence to work with CGAL 4.11 (2 cpp and ↵vrouvrea
cmake compiles the correct one) Homogeneize alpha_complex_3d* codes Fix weighted_periodic_alpha_complex_3d_persistence with CGAL doc help Add grid off file with weights to test weighted_periodic_alpha_complex_3d_persistence git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2744 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ecc4f3629e75bd986ffd22ec348f0412163e4dbd
2017-09-18git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2683 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cacaa8d543cb35bfd709092262809deb102230d5
2017-07-03git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2579 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 697cb9e3146f0b068c6df4e74d972958e793d94b
2017-06-15Add files for test purposevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2546 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52cfcde5f64e0d79f51d09ad6d4ee3169ee498fc
2017-05-31Add persistence diagram samplescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/read_persistence_from_file@2489 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bcad955589cbfccdb5f887e409df17a07288c9e4
2017-05-30Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2479 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bfadffa81f3cd05c8d4a4c911853ad2f2cd0ac36
2017-05-30Merge gudhi_stat branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration@2470 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2067fcd13bd6d8549fccf63f1d03fd31bc783cc8
2017-05-18Modify the way cmake handles utilities, examples, test and benchmarks with ↵vrouvrea
new options to activate/desactivate them. Move hypergenerator as a common utility. Move random point generation from hypergenerator in src/common/include/gudhi/random_point_generators.h git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2442 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2d13e4b0c09455fb604b684f6d71530352271eb
2017-05-16Merged latest trunk changes to Nerve_GICmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2431 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 866ddfadee8160dfaa46b8d703fd8d8d4476892a
2017-05-15Add GPL copyright to the software used to generate the data.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2427 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3aa8a0a8847b57db28ec26a38af72abf3bf509ad
2017-05-12git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2413 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a0a65ae49ca0bb6e5ed614f44cabb060fa0e7490
2017-05-05git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2404 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 317b90b79f730ea15282d3864ab20d10e148b6e0
2017-05-04git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2397 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a58d8b1539aeb53957e843dcfa3deb87cc59ebbd
2017-04-21git-svn-id: ↵pdlotko
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_stat@2373 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cf3cba466fd55883491a108b47360a768f7bae4e
2017-04-18Rename CMake testsvrouvrea
Add specific GUDHI test coverage function Rename cmake/modules/GUDHI_*.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2362 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 071b1eda7d11b1781a9601a013b88a0b2a9b7bf7
2017-03-24Workaround for CGAL version 4.8 compilation issuevrouvrea
New target CGAL_WITH_EIGEN3_VERSION set with CGAL_VERSION when CGAL and Eigen3 found to ease CMakeLists.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2241 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2fbf1f9397aa1549ba05aa26ac6852b882dce147
2017-03-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2194 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8fa0a9eeb6b7064cb1d3d3780d5ab58818f49ec
2017-03-16Merge Last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2192 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 737b10fe34bcc842a1e64522f1eb14c16c7cfec0
2017-03-08Add sphere points on the grid example and document itvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2177 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f746ffbf946df64df9221304bbb3eb55e5db6b4f
2017-03-08Weighted alpha complex 3d featurevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2176 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a5bb0995c4aa75783666adc174245d4639057b8a
2017-03-03Add copyrights on datasetvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2139 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5453960e09145bcee3c6b73fd6c57e73b58c3142
2017-02-16Remove pandas examples and use of OFF files interfaces to be more consistent ↵vrouvrea
(pandas interface is not that hard to be done) Add of distance matrix in Rips git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2081 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3a3b24f0824eed2710edb5bf17d120039973bf62
2017-01-24Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1989 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0743b9beb802b839357ecce17e11af5d4ef2a163
2017-01-20Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1973 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e96278cb0c55788b6aa78fa4a52dae7197b09adb
2017-01-20cpplint fixesvrouvrea
doxygen warning fixes git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_misc_fixes@1972 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5b2328016edb6b5b30de668a0488c576d3d92c40
2017-01-19Only OFF filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1961 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 884285c899de8de4495b8372305052137b8448f6
2017-01-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1938 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8af39a00b9134dbcc77883412c29d7184479979b
2016-12-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1909 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f4f6704025290938a46455fcc488fcb7642567e
2016-12-02Indicate ambient dimcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1815 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a6fb388505a43878c7a31592f5ccc4b29fda12a6
2016-11-22Fix examples and testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1767 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a1c78aec05d443e0525bf24a0cc7f7b5c628629
2016-11-21Add distance matrix reader test casesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1763 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cae9765c56ff6e0a213a7835bab56f3618e4d942
2016-10-20Merge last trunk modificationvrouvrea
Fix doc issue Still doc issue git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1739 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a99345f06e93a3525691699a6fe1505979e8e8e
2016-10-05Rename cliques_of_graph with filtered_simplicial_complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/off_files_only@1637 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ca064800d5bab02c0dea01f1cf5b0b6d08755889
2016-10-04witness_complex_from_file uses off files nowvrouvrea
Remove non-OFF files from repository git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/off_files_only@1613 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d663eec701576a64c4c4af03d61da334a055c3d4
2016-09-23Examples shall use only off filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/off_files_only@1555 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 73833d163f3b76604a5111dc4374b635d60afade
2016-09-19Rename off file reader as stands in convention.vrouvrea
Add an example with a vector of double for point type. Fix SO3 OFF files accordingly to OFF file standard. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1510 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff61bed1f1895bc5bf1af4ae946e2a84a692c390
2016-08-18Move pandas files points into data/pandasvrouvrea
Fix example and tests New persistence constructor for cubical to increase max_persistence_dim (and only for cubical, periodic or not) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1442 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 243a843a65a82b9d3d8d564aa906c0a17eda176a
2016-08-12Fix tests and documentationvrouvrea
Add OFF file read for Alpha complex Add PeriodicCubicalComplex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1432 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5a769f5402522fae801ebafee4d398d47d657be8
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