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2018-11-16Doc review : "shall be of complexity ***type***"vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3992 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8ab7645755e3aa0211d39935db6edeb059c05b43
2018-11-16Code review : Boost minimal version is now 1.56. No more need to test if < 1.53.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3991 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a38b391f763d9aa0aff7746f3a82ee305386b28e
2018-11-16Doc review : User version bad description for Alpha complex 3dvrouvrea
Add a comment for alpha complex 3d example creation for templates Code review : SAFE is now the default version git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3990 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a283cc630ac78634d6700aefb981d130c9464024
2018-11-14Fix https://github.com/CGAL/cgal/issues/3153vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3978 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 41b598d277452a2ebcf9eedc3a7e144d96e46b1d
2018-09-25clang-format all filesvrouvrea
Add safe version alpha complex 3d persistence utility git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3907 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 54b2d0de9231511864df9fa637b60b7ccf34f50f
2018-09-25Constants shall be upper casevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3906 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fcafbe39665a69c6645f8b9d73fc67b98709540e
2018-09-25Code review : use std::unordered_map instead of std::mapvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3903 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 73dd93e44ea8c4029bffd5e6fb5bcbcb634bb525
2018-09-17Add benchmarkvrouvrea
Safe version for Alpha complex 3d (missing part if not weighted and not periodic) Need to fix Alpha_complex_3d_unit_test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3893 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 304c9f89826008eab67a72f3742caa8d6d80f36b
2018-09-11Code review : rephrase a commentvrouvrea
Make tests successfull. Still need to investigate why it fails git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3882 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5649bbe00e6aa39d6f8e7f494d0c3071883bf500
2018-09-07Code review : Only one create_complex function with a default argument valuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3876 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 36c2f8ebf6f60d85613c3bad6fa95433780e13bc
2018-09-07Code review : rearrange documentation and examples according to making ↵vrouvrea
choices more orthogonal Rename Alpha_complex_3d_options.h Alpha_complex_options.h as it can be used by Alpha complex dD git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3875 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6c5b105248e4766a44438a187bb130a3722b310f
2018-08-31Fix weighted periodic compilation issuevrouvrea
Test is commented, to be investigated. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3865 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e334d3f27e648cfc23f2d46fb2e2199a4b1922ff
2018-08-29weighted/non-weighted and periodic/non-periodic with fast/exact are working ↵vrouvrea
well (test suites and examples) Still utilities to rewrite Modify GUDHI_TEST_FLOAT_EQUALITY_CHECK as one test was reaching exactly std::numeric_limits<FloatingType>::epsilon() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3842 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bbd17f90644b4b8444d480ca95da0909e8fe5048
2018-08-28Make fast/safe/exact, weighted/non-weighted, periodic/non-periodic more ↵vrouvrea
orthogonal choices Only examples work for the moment. Periodic to be tested. Add Alpha_complex_3d_from_points.cpp example. Maybe to be removed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3840 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5621df603bdb149c52400a6095271ea0f54b84c
2018-07-31Add unitary tests and documentationvrouvrea
Fix debug exception mechanism git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3712 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 43f66f3843981ab9cd74c117c2b1c6bb9b94810b
2018-07-04Fix SimplicialComplexForAlpha (dD version)vrouvrea
Write SimplicialComplexForAlpha3d concept Add make_filtration_non_decreasing and prune_above_filtration mechanism for Alpha_complex_3d Write documentation for Alpha_complex_3d ( still missing the user version) Remove exact static bool from Alpha_complex_3d_options mechanism and add some comments on value_from_iterator functions Fix Alpha_complex/utilities/CMakeLists.txt warnings git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3667 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32e15aaf98df14a43eaef4a4af00de2ec418924c
2018-07-03Documentation for Alpha complex 3dvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3664 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c6d824cdab7ac5ea79ce458dac666d35a9a21ab7
2018-06-27Fix examples and utilitiesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3645 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 67ac8f8151a85988303c48c9453ee42fecb7a97a
2018-06-26Add insert_simplex in Alpha_complex_3d.hvrouvrea
Modify periodic_alpha_complex_3d_persistence.cpp with new module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3636 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 271e55ce7363a1af991fb107896307887827df65
2018-06-22Compiles run and tests for Alpha_3d, exact, weighted, periodic and weighted ↵vrouvrea
periodic git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3627 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e24d7de108d3e77eaf6319a8165a7c65bec57884
2018-06-22Use unique_ptr to store cgal alpha_shapes_3. Required for not objects_ to be ↵vrouvrea
freed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3626 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6dc9bbe25757a1a7bef2178ef63876c20d3a38b1
2018-06-19First create_complex versionvrouvrea
weighted periodic option git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3624 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d22e307b12aac1390593541f77cabcccffbc6ad
2018-06-18Add periodic 3d Alpha shapesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3622 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a97b603cf83c5f9a80404dd5786896e51015ee08
2018-06-18Separate options from codevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3621 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d72667f205e03d652c67aa0b4e2546a483c02fb1
2018-06-15Weighted, normal and exact version of Alpha_shapes_3vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3618 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1b2014fe34b3e7814d9c3d02881c63e10f047b2
2018-04-26Fix Copyrightsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/copyright_clarification_vincent@3400 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff348beedf92656c6913c2a1df983b5804b33988
2018-03-29Use CGAL::NT_converter to convert filtration values.glisse
Alpha_complex may produce something different from what the Simplex_tree expects, convert it explicitly. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3317 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d6c7492bbf48401a9f63f6462c7704e380eff6e1
2017-12-02Don't return 'const int', that's equivalent to int and causes a warning.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3018 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bbefd89e01293f0d34645979318d745b683cd769
2017-09-20Merge modifications for simplex_tree automatic dimension setvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2689 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c18c6316d51f476a795b59c8b870db1aaf0b4591
2016-12-16Fix cppcheck warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1907 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa45fd8721733a07c8d218930e545ee590788de5
2016-10-14Fix Alpha complex UT for limit casevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1727 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c5c93e0a4d78fc2441de966aebac72ba9419da8
2016-10-13Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1725 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d56056e39c28b013ef71b87aae055502bd86314e
2016-10-13Add CGAL::Identity_property_map proper include. Was not working with CGAL < 4.9vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1718 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8a42c2cfe003e18066f49e526048c020da8d7269
2016-10-12Using a pointer as a property map is deprecated in boost. Fixes the reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1714 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09c2eb41ce80813afb950e5712e5aefa5c6bfd34
2016-10-05Fix review commentsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1648 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: de0b4f12b6eb814224df13c5cec1069310115efa
2016-10-03Rephrase create_complex.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1609 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8e21ddb519ab3dc87f6de08f6f7fcb38848bfc78
2016-10-03No need of complex.dimension(void). It reduces the concept.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1608 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95cf6a9b453349e032c1d553bb9b5c3981c92b0a
2016-10-03get_point can return a const Point&vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1606 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44cec97d381409fdc2a707300c2fe93c67428e09
2016-10-03Remove confusing post condition of ctorvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1605 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8ba221d495b3ab167e3e151af07e68bfcfa015e4
2016-10-03Rephrase the alpha complex data structurevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1604 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9d99909027944d2a98096830646bda36b18ec9b
2016-09-23Fix cpplintsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1548 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b8d7d5b4bde8aeec92d6bfc79b8c146c551317c0
2016-09-23Modify the Alpha complex doc wit a concept to create a simplicial complex ↵vrouvrea
from alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1546 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d8083c3b0e03e1cf0033e5c7c1ba6f95618efdc1
2016-09-22New template function create_complex for Alpha_complex to create the ↵vrouvrea
simplicial complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1540 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 24e53dc58d158166b976dd09760ad0e2acaf8e36
2016-09-09isnan must be preceeded by std::vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1486 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94adb015da0957f3b4ce3f5742f9cb0cf57b6284
2016-06-10Rename namespaces according to conventioncjamin
+ Missing Boost_THREAD_LIBRARY + Useless typename + Use TBB_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c02ec481b62ef52b40d849e76e3d333e2ca4e7c
2016-04-16Minor tweaks to alpha-complexglisse
* use the dimension of the kernel for the TDS * recycle a vector git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1134 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 590f625287629dd041afd5ce479c99b48a476b64
2016-04-07Remove insertion check for duplicate points case.vrouvrea
Cpplint fixes git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1103 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ee7cf0ca7085966039d048199c35b6adf945aa2
2016-04-06Marc review fixvrouvrea
cpplint/cppcheck fix git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1102 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f47277da05debb56dd9a4a96bf89ec7b3ffa2e27
2016-04-06Replace Delaunay_triangulation_off_io.h and ↵vrouvrea
Delaunay_triangulation_off_rw.cpp with Points_off_io.h and CGAL_points_off_reader.cpp Adapt UT and examples for this Adapt Alpha complex for it Alpha complex is now inserting points in a faster way (after a spatial_sort). Remove Alpha complex construction from a pointer on Delaunay triangulation (no more needed). Adapt documentation to all these modifications Forbid copy/move constructor/assignment operator on Alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1098 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 08a673b66451b5cb03fbdf482d696d93b35d220f
2016-03-24prune_above_filtration version that is no more using filtration vector.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1073 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95dca83fa459abd902624bf2a5f631925e4cf9b0
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