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2016-06-10Rename namespaces according to conventioncjamin
+ Missing Boost_THREAD_LIBRARY + Useless typename + Use TBB_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c02ec481b62ef52b40d849e76e3d333e2ca4e7c
2016-06-10Use TBB_LIBRARIES instead of TBB_RELEASE_LIBRARY + missing boost dependencycjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1269 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d39ecf562678c53f960467e7cb14eeaff4b938c4
2016-06-07Rename projects in CMakeLists.txtcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1257 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a51e43d795b0c246d0949c7566aa57d3e15925c7
2016-04-16Minor tweaks to alpha-complexglisse
* use the dimension of the kernel for the TDS * recycle a vector git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1134 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 590f625287629dd041afd5ce479c99b48a476b64
2016-04-08Merge of alpha complex feature from trunkvrouvrea
Add Eigen3 in installation Add alpha complex in introduction All examples directory moved to example (was example/common, example/Alpha_complex) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1110 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0b88a4f2b102e2189f4b916b8358ffb2458a72f0
2016-04-07Remove insertion check for duplicate points case.vrouvrea
Cpplint fixes git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1103 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ee7cf0ca7085966039d048199c35b6adf945aa2
2016-04-06Marc review fixvrouvrea
cpplint/cppcheck fix git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1102 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f47277da05debb56dd9a4a96bf89ec7b3ffa2e27
2016-04-06Replace Delaunay_triangulation_off_io.h and ↵vrouvrea
Delaunay_triangulation_off_rw.cpp with Points_off_io.h and CGAL_points_off_reader.cpp Adapt UT and examples for this Adapt Alpha complex for it Alpha complex is now inserting points in a faster way (after a spatial_sort). Remove Alpha complex construction from a pointer on Delaunay triangulation (no more needed). Adapt documentation to all these modifications Forbid copy/move constructor/assignment operator on Alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1098 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 08a673b66451b5cb03fbdf482d696d93b35d220f
2016-03-24prune_above_filtration version that is no more using filtration vector.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1073 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95dca83fa459abd902624bf2a5f631925e4cf9b0
2016-03-23prune_above_filtration returns filtration vector modification information ↵vrouvrea
instead of calling initialize_filtration() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1071 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6fdc1797ac6e7b452abe150643f0ec9578c3bbab
2016-03-22GUDHI_CHECK was not intuitive.vrouvrea
Reverse GUDHI_CHECK calls. No exception when no point is given in contrction. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1070 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bf6a08d48b5b29a5b24bf5107116e399dfc0a6bc
2016-03-22Add a comment to say Alpha complex takes the ownership of the pointer on the ↵vrouvrea
Delaunay Triangulation. Add public typedef Delaunay_triangulation, Point_d and Geom_traits git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1067 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1137a9912ebac38a14d680921e62cd36e0068153
2016-03-22Delaunay triangulation is point dimension.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1066 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 672164328b3b1ac104811fb2fd79a3771c92d60e
2016-03-17Use post and exception doxygen tag instead of warnings everywhere.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1053 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5e263835e662d66ef068c73d3efe71f72f90de10
2016-03-17Fix cpplint/cppcheckvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1052 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d598999dec360fb4a80ca3e228128d889bfed3c7
2016-03-16CppCheck and CppLint fixes for alpha complexesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1047 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a9b42ad2f8751384b5227fa3da8f380cda9b3696
2016-03-15In Delaunay_triangulation_off_io.h, constructing the Triangulation from a ↵vrouvrea
vector of Points is a more efficient way (instead of inserting points on the fly). As consequence, the documentation needs to be rewritten as the points index are changed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1046 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bdb0196b61418a983cfaf7f6781a3a2906e8b136
2016-03-14Alpha complex documentation generated had no scrolling menu for alpha complexesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1039 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 91b8bc91510c4605956682db729f80c03f9b982f
2016-02-20Details in the doc of alpha-complex.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1033 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7cc1b51ef8e93ee987710a8ea2ed4ac98638f099
2016-02-19Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1032 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0e5b89e0ea0d69ebfdb74ba3bbf29518f7ce5ce8
2016-02-03Mentionning Delaunay complex in Alpha complex documentation (user and reference)vrouvrea
Specifying Alpha complex Kernel must be an Epick_d dD kernel (user and reference) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@998 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b1a7a0cadd236bbfa6c529f2979ad2096414e207
2016-02-02alpha off reader test strategy modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@995 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa4ba97eecefb03e01a53ae1e2b50248a0857043
2016-02-02Make example for doc shorter. Include strategy reviewalvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@992 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 23d3e71d7d0fb4d649f73e53959626c5cbb0acd8
2016-01-19make_filtration_non_decreasing fixvrouvrea
Ut rewrite git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@974 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3326338b9454923b59d3e42add0f3530c6dbe16f
2016-01-12Fix alpha complex remarks and bugsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@957 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa837fd1a4373c2322db16353d98767907f34c79
2015-12-11Commit code and doc reviewvrouvrea
Still issue and lot of logs in simplex_tree::prune_above_filtration git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@945 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cd4f60ddcacb0444e0eb3b9323d8042eb49b132e
2015-11-27After doc reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@931 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 578da0e6fff453560e666e8f00147f9e10cb6de6
2015-11-18rev911 rollbackvrouvrea
code review fix fix prune_above_filtration removing every simplices git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@927 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1660da972bd5198214a0f0384be9be66a5312e74
2015-11-13Utils.h -> Debug_utils.hvrouvrea
More verbose in debug mode (use NDEBUG instead of DEBUG_TRACES) GUDHI_CHECK function to throw in debug or ignore in release mode git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@911 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 250dc0c0f5146f0b9e3fce0e9a8ca0da6af7cf98
2015-11-12code review fixvrouvrea
prune_above_filtration and remove_maximal_simplex in Simplex_tree.h make_filtration_non_decreasing and rec_make_filtration_non_decreasing in Simplex_tree.h git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@910 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a20c9da65a5a3294e42ad2dd45a399d77fb5ad30
2015-11-09Code review fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@895 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa5f6a30b847dd8a2add83fab50762338095de26
2015-11-09Backmerge from trunk.vrouvrea
Alpha complex code review. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@894 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 702c4d667de4e7191d1050e6d855d2f79117f954
2015-11-09Modification for Porquerolles Workshopvrouvrea
Bar_code_persistence and alpha_complex_persistence git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@893 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 63d2d21d5ff7c9a94a67eafc326bf8a561bf8166
2015-10-13Backmerge from trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@853 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3f1b56bf4986df7bb2938ea2fff944eb9bf9b653
2015-10-02Review fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@816 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d112bf6b1b07a75947392576baa53321326e65c4
2015-09-01UT fix to compile and run under osXvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@768 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8351f5bd12a2d5e4869a61c298ddf76ad04f91d
2015-09-01doc images size was not correct. bad cut in simplex_tree.h (assign_key was ↵vrouvrea
badly removed). git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@766 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 05761f615e4518d7816c08121402980625409014
2015-09-01Documentation fix (starts at 0 and not 1 + alpha shape was not correct)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@765 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 99f8d4cd274778f5d7aac04afa84b780dc3678ec
2015-08-31insert_simplex_and_subfaces no more factoriel complexity.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@764 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34fd4f5e0221a3899ec98a0cdcbdc83fb83bf463
2015-08-24get_point is constvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@754 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fb4be75f9438bab94b68f551ae3bde73c980d131
2015-08-24Merge trunk + alpha complex fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@753 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a0a1f71420736a0a702e6dbc76bc010b36bf5e13
2015-08-18exception throw on get_point not foundvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@740 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd2efc725a140f978d2624fe7879dc32f5566ab0
2015-08-18It is not the loop that must be skipped, but only the propagation, ↵vrouvrea
otherwise, points are missed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@739 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ce88511e64685ee68630db77eddc922dcf8a016e
2015-08-17Alpha complex fix for only inserting when alpha is less thanvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@736 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0bc6560fa08b72d823681d36c49e80f0437d99f1
2015-08-10fix bad merge in src/CMakeLists.txtvrouvrea
Remove commented lines from UT git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@726 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c0d0c1412205aacbedaa0a562ba5e1e12513020b
2015-08-05Debug traces in DEBUG modevrouvrea
Alpha complex from delaunay triangulation in static dimension git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@725 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9dda5a16874ae009c24be39c5a9c9d4124a29063
2015-08-04get_point method in alpha_complex structure and its UTvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@723 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ad36d7617f4aade5c85e2a8fb7a0c60180aa59f
2015-06-25Modification for doxygen to be generated from user version (to fix bad path ↵vrouvrea
in doc) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@642 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 68362c2ab9d83a8daa31bcb9d7799216c8ccf94c
2015-06-24Alpha complex construction from a list of CGAL pointsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@641 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 521269f793f9c16c2305db8c97678bea2bf95092
2015-06-23Separate main alpha documentation from class documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@635 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c1a775a032fc5e5ee6da473b91d07cfc3f1930c6
generated by cgit v1.2.3 (git 2.39.1) at 2024-07-02 14:03:01 +0000