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2017-10-26Code review: downgrade_dimension renamed lower_upper_bound_dimension and ↵vrouvrea
make it private. Automatically when dimension_to_be_lowered_ is set (on removal) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2810 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c764433bcc5357acc6454683d4f4182c7c960d6d
2017-09-22Remove automatic_dimension_set call from remove and prune functionsvrouvrea
Make it public to be available Modify tests accordingly git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2703 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2ff42d5327ae76b121390a913c4e548d6f59ea99
2017-09-20Merge modifications for simplex_tree automatic dimension setvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2689 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c18c6316d51f476a795b59c8b870db1aaf0b4591
2017-06-02Get rid of Boost_system library linkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52deba0f2212767b99b801810d356e55417225db
2017-06-02Try to remove boost systemvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2504 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd12c45af5ebeb72c4b49142abab91b46ce1a9da
2017-05-30Make install examples mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2467 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 018b6e55c392b37d02503e7822e0a586061c987d
2017-05-15Use MATHJAX for doxygen documentation generation.vrouvrea
Fix pseudo code for alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/doxygen_using_mathjax@2428 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 05ce587c4ba46e164dad02766cbaca40373e3ad8
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-18Rename CMake testsvrouvrea
Add specific GUDHI test coverage function Rename cmake/modules/GUDHI_*.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2362 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 071b1eda7d11b1781a9601a013b88a0b2a9b7bf7
2017-03-24Workaround for CGAL version 4.8 compilation issuevrouvrea
New target CGAL_WITH_EIGEN3_VERSION set with CGAL_VERSION when CGAL and Eigen3 found to ease CMakeLists.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2241 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2fbf1f9397aa1549ba05aa26ac6852b882dce147
2017-03-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2194 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8fa0a9eeb6b7064cb1d3d3780d5ab58818f49ec
2017-03-03Add GPL copyrights on images directoriesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2142 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d6bdcfdefb00263199b22fcc39cdb8826f8f3dbe
2017-01-31Rename Rips and Alpha concept file namesvrouvrea
GUDHI version 2.0.0 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2038 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: be93fae5a69b15de05bfabe75a2d84ef606b589f
2016-12-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1910 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f6716dcc5c0ad17abe248bdeddb868e04a94fc0
2016-12-16Fix cppcheck warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1907 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa45fd8721733a07c8d218930e545ee590788de5
2016-12-01Merge last trunk modificationsvrouvrea
add Py test for subsampling Add choose_n_furthest from off file git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1810 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a23746a3dd427edc958b375f9f0ac4b4d2901fcb
2016-10-20Merge last trunk modificationvrouvrea
Fix doc issue Still doc issue git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1739 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a99345f06e93a3525691699a6fe1505979e8e8e
2016-10-14Fix Alpha complex UT for limit casevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1727 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c5c93e0a4d78fc2441de966aebac72ba9419da8
2016-10-13This test fails on Win 32 and 64vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1726 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3f5820af954fb6185d938b3e67bc533954b41f7f
2016-10-13Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1725 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d56056e39c28b013ef71b87aae055502bd86314e
2016-10-13Add CGAL::Identity_property_map proper include. Was not working with CGAL < 4.9vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1718 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8a42c2cfe003e18066f49e526048c020da8d7269
2016-10-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1715 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 68b171b536522a45c4304e40bafe11d08c8921dd
2016-10-12Using a pointer as a property map is deprecated in boost. Fixes the reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1714 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09c2eb41ce80813afb950e5712e5aefa5c6bfd34
2016-10-11CMake message modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1705 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cc129ae74df9da178e781bc05fe612cc34a282ed
2016-10-05Fix review commentsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1648 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: de0b4f12b6eb814224df13c5cec1069310115efa
2016-10-03Rephrase create_complex.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1609 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8e21ddb519ab3dc87f6de08f6f7fcb38848bfc78
2016-10-03No need of complex.dimension(void). It reduces the concept.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1608 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95cf6a9b453349e032c1d553bb9b5c3981c92b0a
2016-10-03Precise insert_simplex_and_subfaces conceptvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1607 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8686088820bac273354d451b237953f984c7bd02
2016-10-03get_point can return a const Point&vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1606 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44cec97d381409fdc2a707300c2fe93c67428e09
2016-10-03Remove confusing post condition of ctorvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1605 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8ba221d495b3ab167e3e151af07e68bfcfa015e4
2016-10-03Rephrase the alpha complex data structurevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1604 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9d99909027944d2a98096830646bda36b18ec9b
2016-09-23Fix cpplintsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1548 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b8d7d5b4bde8aeec92d6bfc79b8c146c551317c0
2016-09-23Modify the Alpha complex doc wit a concept to create a simplicial complex ↵vrouvrea
from alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1546 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d8083c3b0e03e1cf0033e5c7c1ba6f95618efdc1
2016-09-22New template function create_complex for Alpha_complex to create the ↵vrouvrea
simplicial complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1540 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 24e53dc58d158166b976dd09760ad0e2acaf8e36
2016-09-09isnan must be preceeded by std::vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1486 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94adb015da0957f3b4ce3f5742f9cb0cf57b6284
2016-08-04Make GUDHI Cmake less verbose on CGAL package findingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1415 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2eebce43b0f75ab1cef3a2fe6f2c1bd0b38672a9
2016-07-01Eigen3 find_package factorizationvrouvrea
CGAL find package in root CMakeLists.txt for Witness complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/eigen3_cmake_factorization@1377 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32137f7687837c63ecfab3a2d11114b27873a1f2
2016-07-01Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1375 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e09c451302009b8a4f8882bb286829b485c605ab
2016-06-14data points generator to follow convention namingvrouvrea
Alpha_complex instead of Alpha_shape git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1278 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 680d599dce4b87a570083ac16c6574166d7af47d
2016-06-10Rename namespaces according to conventioncjamin
+ Missing Boost_THREAD_LIBRARY + Useless typename + Use TBB_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c02ec481b62ef52b40d849e76e3d333e2ca4e7c
2016-06-10Use TBB_LIBRARIES instead of TBB_RELEASE_LIBRARY + missing boost dependencycjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1269 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d39ecf562678c53f960467e7cb14eeaff4b938c4
2016-06-07Rename projects in CMakeLists.txtcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1257 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a51e43d795b0c246d0949c7566aa57d3e15925c7
2016-05-30C++11 stylevrouvrea
remove cython directory from doxygen parser git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1223 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d991c7be2a45d54f928225edb5a6a8a4f9ce2671
2016-04-16Minor tweaks to alpha-complexglisse
* use the dimension of the kernel for the TDS * recycle a vector git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1134 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 590f625287629dd041afd5ce479c99b48a476b64
2016-04-08Merge of alpha complex feature from trunkvrouvrea
Add Eigen3 in installation Add alpha complex in introduction All examples directory moved to example (was example/common, example/Alpha_complex) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1110 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0b88a4f2b102e2189f4b916b8358ffb2458a72f0
2016-04-07Remove insertion check for duplicate points case.vrouvrea
Cpplint fixes git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1103 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ee7cf0ca7085966039d048199c35b6adf945aa2
2016-04-06Marc review fixvrouvrea
cpplint/cppcheck fix git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1102 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f47277da05debb56dd9a4a96bf89ec7b3ffa2e27
2016-04-06Replace Delaunay_triangulation_off_io.h and ↵vrouvrea
Delaunay_triangulation_off_rw.cpp with Points_off_io.h and CGAL_points_off_reader.cpp Adapt UT and examples for this Adapt Alpha complex for it Alpha complex is now inserting points in a faster way (after a spatial_sort). Remove Alpha complex construction from a pointer on Delaunay triangulation (no more needed). Adapt documentation to all these modifications Forbid copy/move constructor/assignment operator on Alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1098 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 08a673b66451b5cb03fbdf482d696d93b35d220f
2016-03-24prune_above_filtration version that is no more using filtration vector.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1073 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95dca83fa459abd902624bf2a5f631925e4cf9b0
2016-03-23prune_above_filtration returns filtration vector modification information ↵vrouvrea
instead of calling initialize_filtration() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1071 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6fdc1797ac6e7b452abe150643f0ec9578c3bbab
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