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2018-09-20fixed small bug on persistence diagramsmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3901 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cbeecd2f928b4c4df13acf5a7a2083882fdc98d2
2018-09-18git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3897 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5fe42a6f42443ca7217c69f8a18780cdb85669e
2018-08-28added function to read point cloud from array in memory + changed a little ↵mcarrier
bit the API git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3841 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f31a3a60b2438d7b767a1ee310d859477330a743
2018-07-02Merge Nerve_GIC modifications from Mathieu (11th of June 2018)vrouvrea
svn merge -r3468:3579 ^/branches/Nerve_GIC git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3659 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9e0e70cccf2829d7d55d241b807aeff0b73094bc
2018-07-02Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3656 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f02e2f3b3e716d6578be49437e7d0b33fa99e5b
2018-06-11git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3579 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4fe9f0185421f9c2be697f0db323c042f7c8e7ca
2018-06-11minor changemcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3578 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 262dc4f45eba9f5ada23b078d52be54b4eb60a41
2018-06-11small change in bootstrap codemcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3577 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: da8a421316d545b400f82eca3f426912b4767a8d
2018-06-07Code review : Use thread_local when necessaryvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3558 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0893cfa1065dcd9988c9d910e764b7a1edbcdc11
2018-06-06Merge of branch thread_local_optional_vincent to take into account XCode < ↵vrouvrea
v.8 as thread local is not available git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3554 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9dcf072a4606d1131a925bca4571f0f1b5547d14
2018-06-06Merge paralellized version of Nerve_GIC fix for CoordGIC from Nerve_GIC branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3552 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 384a6362a19da625b09879ad6eb7573c48a52940
2018-05-28added mutexmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3468 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0527349c20f3e44c4f3db196df13ccdd4c265bbb
2018-05-25small modif to avoid assert on compute_PD()mcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3459 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b0e73b4e1e77743419b06d142467ebfceacf83cf
2018-05-15CMake minimal version is now 3.1vrouvrea
Compilation flags are now externalized in cmake/modules Add NO_POLICY_SCOPE for GUDHI_third_parties to fix warnings Try to fix CGAL 4.12 that is no more setting CGAL_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3445 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0ac7613f016e28cc634606f76e85ecaf5bacb2d4
2018-04-26Fix Copyrightsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/copyright_clarification_vincent@3400 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff348beedf92656c6913c2a1df983b5804b33988
2018-04-05Merge last modifications of Nerve_GIC branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3342 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 268968d6b446db88bdaab48bbdb5c91882d4a820
2018-04-04No need to repeat title, automatically done by the websitevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3338 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 51d295377d2b3235e9316f199bf95d3c5aeaeab3
2018-03-30changed functions for bootstrapmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3322 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b26ac991e90767fb0de3d91d01ffe1ef25c572fe
2018-03-29git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3320 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 21f1574da074759d38553d2a7c87f6c979f77934
2018-03-28Merge last Nerve_GIC development from eponym branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3311 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c57e5f6f364b6162f607edd07f3a31577e640fcb
2018-03-28git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3309 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1af850057913b691b237bde016ef11de9d65b91b
2018-03-20Finish the documentation and examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3299 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d60f4db274962c1c6aaef3c4ab6787bda8c0640f
2018-03-15Fisrst version of the bindingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_nerve_gic_vincent@3291 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 082f786e6b7b2f3377ebeab8cfb49029ea809d27
2018-03-08Web site review after Editorial Boardvrouvrea
Do not need to import gudhi twice in py git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3270 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d7a4bba27f4cbcad5f8b18cb86587a15e6a8435
2018-02-27added parallelization with TBB + some map changed to vector + construction of PDmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3258 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b1990a9f139015217e5a59cc87e1f6b5296be6b3
2018-02-26git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3257 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 25ee894f17d60c05f961faec7bfa41f510d91827
2018-02-02Fix after version release of Cover complex and Persistence representation ↵vrouvrea
installations Fix utils download link git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3211 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9596df8b0d0cdc3d8df79aa367a26b34a96d7f5e
2018-01-30Fix after web reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3189 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd42bab9b27a3c086adeaf75068c83a911ede000
2018-01-30Copy test files in build directory for not to pollute sourcesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3185 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4926f0a4e3c02ce77bdbf5847d421b6152a24a65
2018-01-30Fix --v to -v for Cover complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3182 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 46e36af1a3e9aae8f1b12d2ee7fc749eb531f505
2018-01-29Code review : with C++11 fstream constructor from std::string is availablevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3178 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 31485d70d2d4a475b70d0c07859084b36139b56f
2018-01-29Fix doc issue for utilities part on the web sitevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3176 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3bafd9e13a5646ca93023144705d3ac7ed7c9b3a
2018-01-29Using std::string instead of char array for file names (overflow detected by ↵vrouvrea
fortify) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3171 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b590989d278e00aec79d6a7bc2b72088b5cb0e57
2018-01-26Move documentation Copyright in footervrouvrea
Removed from each module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3167 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7595f2d18cdc3773bbd96fa9fed414876ff9fdc7
2018-01-26Seperate installation and examples from main pagevrouvrea
Move cover complex utilities from examples GIC.cpp example was not compiled, nor tested. It is removed. Persistence representation : no need to link with Boost_SYSTEM git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3164 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cf2bfa6c6de2ed359aaa165b9f80bca7e06defb1
2018-01-25Small changes suggested by Marcmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3157 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 011f3638ca7b0c51cdd0d0983bb9e2f6fd256ad9
2018-01-25Code review : fix camel case for types and use of std::log instead of logvrouvrea
Add CGAL dependency for Nerve_GIC (link to bottleneck) Add persistence representation in bibtex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3155 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8a45497b3d1f34a5c4a1c7856113c6b7680a12a2
2018-01-22Fix some cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3148 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34a01d0b7d9b59e72fd14e7616a09dde50e1dbd1
2018-01-22Merge branch Nerve_GIC - using boost Dijkstra instead of Simplex treevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3147 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 82ab3eca5c907cbbb716a7ef47cc84b0a0d1000d
2018-01-03git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3112 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0e3300cbc4d9c1375a7a162d175a982c3145c42b
2017-12-22git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3099 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa1505962b7b6140611935cd960edcdb0c48dd5c
2017-12-22cleaned the codemcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3096 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a24fb8ff0300dc06c48fdb163d053387ae21c29
2017-12-21git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3094 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 277086858a1634a27fc271f18b3d85f2b669f9bd
2017-12-20added extended persistencemcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3092 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a20ecf24407ce88654ad01257d8e44f8395c6b62
2017-12-19removed namespace boost and stdmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3091 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1c367d57f6d2874c4008e08be68a39d6f821706
2017-12-19git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3087 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0d5e8163d4ea01c9a34ec6b6c6d4bd4fbedffb68
2017-12-19changed data structure to use boost graphsmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@3085 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 614b6362ceeb8237c224d12b523677dcbc82fba8
2017-11-17Homogenize shebang for Python scripts used as executablesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2903 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 904aff059b880e4e197fd81c46160d53b5794998
2017-11-16cpplint fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2901 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e3bcc2ee7393216cb37422bc9133bf9649695a82
2017-11-16Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2899 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a9ae3db0198920608159e57b246f19c3d1acb9dc
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