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2017-09-28Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@2725 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 78f35b92214c207f00b26ea87ca88d20abeea53d
2017-09-27Merge last trunk modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_remove_useless_global_filtration@2720 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 37cec1ea1e06c9e9656962614fcddc0fa022c5d0
2017-09-26Merge weighted alpha complex fix branchvrouvrea
Add some text to 3d alpha complexes in the usage function git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2716 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6f2ee1897438a6bf75b484c2c625c43f2571ab41
2017-09-25Adding all that is needed for Rips complex construction from correlation ↵pdlotko
matrix. Moduo the fact that I cannot see the doc (althoug make doxygen do not create any errors), this is ready for review. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@2712 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e8e7acceaf2be6f17baa3d77c85e207a74a4fb33
2017-09-25Fix weighted alpha complex 3dvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2709 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3e7d1f73038d193b566e790a3095b6f802c48b48
2017-09-22Remove global filtration attribute of te simplex tree (including getter and ↵vrouvrea
setter) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_remove_useless_global_filtration@2705 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a6c179ae47e61d1ca12d1f54c4ae1fc0e3c1fde2
2017-07-04Add Gudhi namespace for reader_utilsvrouvrea
Add confidence band in persistence_graphical_tools.py Persistence_diagram returns a plot that is no more showed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2582 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4125f4f525057e89c8b0d5d164ea0b9d1df1bd72
2017-06-02Get rid of Boost_system library linkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52deba0f2212767b99b801810d356e55417225db
2017-05-30Make install examples mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2467 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 018b6e55c392b37d02503e7822e0a586061c987d
2017-05-09Doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2407 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59aa4cbeef583b93f5e0e4416a4cd2903643d8f0
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-11Move Euclidean_distance in Gudhi namespacevrouvrea
Fix cpplints git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2331 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bc5609c2df490db50e82b56a5e6d899dc6370182
2017-03-24Merge cgal_4.8_issue branch into the trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2242 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 094b70b4141e7456651263b1619240aff6a5d562
2017-03-24Workaround for CGAL version 4.8 compilation issuevrouvrea
New target CGAL_WITH_EIGEN3_VERSION set with CGAL_VERSION when CGAL and Eigen3 found to ease CMakeLists.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2241 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2fbf1f9397aa1549ba05aa26ac6852b882dce147
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2237 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e320827b0f22160d6645f9ac89d7d7790964cf00
2017-03-24cpplint fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2236 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d3680e5085b858b2d5930179ca345f708688cbae
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2232 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ac02d5dd3b2aedd4795f775c228fe5ef7e1b3320
2017-03-08Weighted alpha complex 3d featurevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2176 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a5bb0995c4aa75783666adc174245d4639057b8a
2017-03-07Add doc for exact alphavrouvrea
CMake for exact alpha Factorization git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2170 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b2ac281dd21313602590fc834e7ad22bbf081021
2017-03-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2169 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f8526767e8002cb106f46b8eeb93442b596786de
2017-03-07Factorization of from functionsvrouvrea
Add exact alpha complex 3d example git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2168 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1c55851fd2ebcf8ec553854baca803c08b6634c4
2017-02-28Move boost flags for MSVC compilation issue (already moved on rev. 2115)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2121 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f2f185fbfbbd56ef9fb5a96b2d75a65db4c850e
2017-01-25Code review fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_doc_fixes@2011 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0f2751802f4a6f4e75dfd3dbea08d57fe081e8f9
2017-01-20Fix code reviewvrouvrea
Remove unused include git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1968 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc983a4be66296869cbeddd66b9d48e25a24b5ef
2017-01-19Only OFF filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1961 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 884285c899de8de4495b8372305052137b8448f6
2017-01-19Strange Floating Point Exception : 8 on MacOSX since global type removalvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1958 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e0afcd91aa3b8e166f2ed439a7542934ffe0b1b5
2017-01-19Fix ccplint issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1956 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 01ffb1d403c65a90d081cf17fe8f595c11a34bab
2017-01-17Add of a rips_persistence example step by step (without Rips_complex module)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1941 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0e1a13775b50d71474ff7317511a4f7f8ceec05b
2016-12-16Fix persistence rips after create_complex voidificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1896 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d4a1258ea01bae048f30621594d0daf280fd8abb
2016-12-08replace euclidean_distance with a class Euclidean_distance containing an ↵vrouvrea
operator() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1840 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b1619401ac0ef978257709c5deeb7e19fbcff32c
2016-11-23Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1771 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 994e3bf769d236d230ac2f7e751aa310dabb74bb
2016-11-22Fix examples and testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1767 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a1c78aec05d443e0525bf24a0cc7f7b5c628629
2016-11-17Modify examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1757 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b6f26947ad16f440ea4d4b7cb5e145a58f28dcb
2016-11-16Merged last trunk modificationsvrouvrea
Make Witness compile and test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1755 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e6eec55ac0a4cc66da3bb081a222cae5b998c1cf
2016-10-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1715 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 68b171b536522a45c4304e40bafe11d08c8921dd
2016-10-06Tests are too longvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1672 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a2c79e443983f4f643b0ab3e21ab5e4fa978e27d
2016-10-06Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1650 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 38704453638793e50aa1432eb4eabd9121cf0a26
2016-10-06Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1649 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7922bc81bedad2be83951857a518edb73f9ca54e
2016-10-05Fix UTvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1644 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 66eca6d5355fbdfc100fb74db70328501c6d7feb
2016-10-05Fix Windows failed UTvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1641 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a85234208799a35da37cabcea4704018873cf13f
2016-10-03Fix euclidean distance for ripsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1610 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a07dfd4ffe3f17bf242ffb5b57058e99171a8016
2016-09-30Fix compilation issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1596 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 343308ef914e6a6617890f49a55eb0bb8db15ee9
2016-09-28Add rips complex module and first modification stepvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1577 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc949570c6cffa4756f84a15c41fadc8c45b2af2
2016-09-23Fix cpplintsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1548 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b8d7d5b4bde8aeec92d6bfc79b8c146c551317c0
2016-09-22New template function create_complex for Alpha_complex to create the ↵vrouvrea
simplicial complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1540 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 24e53dc58d158166b976dd09760ad0e2acaf8e36
2016-08-25Modify the comment about uint_8 -> max is 255vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1455 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ca626c7d0f4a690587946bf7b9e4d31c8effc23
2016-08-05With the good include cstdvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1419 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 864b9995ec8675e1578bccf81126959a4a5a22c4
2016-08-05Modify plain_homology to show a Simplex_key type modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1418 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9d9c99b8d8acd8a6fdbfe09601ffe6826ca04857
2016-08-04Make GUDHI Cmake less verbose on CGAL package findingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1415 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2eebce43b0f75ab1cef3a2fe6f2c1bd0b38672a9
2016-07-01Eigen3 find_package factorizationvrouvrea
CGAL find package in root CMakeLists.txt for Witness complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/eigen3_cmake_factorization@1377 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32137f7687837c63ecfab3a2d11114b27873a1f2
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