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2017-10-02Fix weighted_alpha_complex_3d_persistence to work with CGAL 4.11 (2 cpp and ↵vrouvrea
cmake compiles the correct one) Homogeneize alpha_complex_3d* codes Fix weighted_periodic_alpha_complex_3d_persistence with CGAL doc help Add grid off file with weights to test weighted_periodic_alpha_complex_3d_persistence git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2744 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ecc4f3629e75bd986ffd22ec348f0412163e4dbd
2017-09-26adding a version of periodic weighted alpha shape (that unfortunatelly do ↵pdlotko
not work yet...) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2718 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 611967b7fc8257fb2ae27ecc42f0e303c183755a
2017-09-25Fix weighted alpha complex 3dvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2709 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3e7d1f73038d193b566e790a3095b6f802c48b48
2017-08-17Add file formats for Python.vrouvrea
Binding for persistence write files Launch py.test with the command "python -m pytest" (shall work everywhere) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2611 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9443a7eb5b580ece7708ff57949ad08339c1c5c3
2017-07-04Add Gudhi namespace for reader_utilsvrouvrea
Add confidence band in persistence_graphical_tools.py Persistence_diagram returns a plot that is no more showed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2582 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4125f4f525057e89c8b0d5d164ea0b9d1df1bd72
2017-06-02Get rid of Boost_system library linkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52deba0f2212767b99b801810d356e55417225db
2017-05-30Make install examples mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2467 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 018b6e55c392b37d02503e7822e0a586061c987d
2017-05-09Doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2407 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59aa4cbeef583b93f5e0e4416a4cd2903643d8f0
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-11Fix some #include ""vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c15320d156c2b928e9eb664a2afed8fa9809e7e
2017-04-11Move Euclidean_distance in Gudhi namespacevrouvrea
Fix cpplints git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2331 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bc5609c2df490db50e82b56a5e6d899dc6370182
2017-03-24Merge cgal_4.8_issue branch into the trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2242 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 094b70b4141e7456651263b1619240aff6a5d562
2017-03-24Workaround for CGAL version 4.8 compilation issuevrouvrea
New target CGAL_WITH_EIGEN3_VERSION set with CGAL_VERSION when CGAL and Eigen3 found to ease CMakeLists.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2241 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2fbf1f9397aa1549ba05aa26ac6852b882dce147
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2237 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e320827b0f22160d6645f9ac89d7d7790964cf00
2017-03-24cpplint fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2236 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d3680e5085b858b2d5930179ca345f708688cbae
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2232 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ac02d5dd3b2aedd4795f775c228fe5ef7e1b3320
2017-03-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2194 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8fa0a9eeb6b7064cb1d3d3780d5ab58818f49ec
2017-03-16Merge Last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2192 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 737b10fe34bcc842a1e64522f1eb14c16c7cfec0
2017-03-08Add sphere points on the grid example and document itvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2177 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f746ffbf946df64df9221304bbb3eb55e5db6b4f
2017-03-08Weighted alpha complex 3d featurevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2176 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a5bb0995c4aa75783666adc174245d4639057b8a
2017-03-07Add doc for exact alphavrouvrea
CMake for exact alpha Factorization git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2170 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b2ac281dd21313602590fc834e7ad22bbf081021
2017-03-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2169 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f8526767e8002cb106f46b8eeb93442b596786de
2017-03-07Factorization of from functionsvrouvrea
Add exact alpha complex 3d example git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2168 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1c55851fd2ebcf8ec553854baca803c08b6634c4
2017-03-03Merge last trunk modificatinosvrouvrea
make sphinx depends on cython target git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2155 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ebb1709872963ffd30a6d31ab596f2715ca14436
2017-03-03Add GPL copyrights on images directoriesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2142 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d6bdcfdefb00263199b22fcc39cdb8826f8f3dbe
2017-02-28Move boost flags for MSVC compilation issue (already moved on rev. 2115)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2121 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f2f185fbfbbd56ef9fb5a96b2d75a65db4c850e
2017-01-25Code review fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_doc_fixes@2011 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0f2751802f4a6f4e75dfd3dbea08d57fe081e8f9
2017-01-24Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1989 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0743b9beb802b839357ecce17e11af5d4ef2a163
2017-01-20Fix code reviewvrouvrea
Remove unused include git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1968 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc983a4be66296869cbeddd66b9d48e25a24b5ef
2017-01-19Only OFF filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1961 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 884285c899de8de4495b8372305052137b8448f6
2017-01-19Strange Floating Point Exception : 8 on MacOSX since global type removalvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1958 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e0afcd91aa3b8e166f2ed439a7542934ffe0b1b5
2017-01-19Fix ccplint issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1956 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 01ffb1d403c65a90d081cf17fe8f595c11a34bab
2017-01-17Add of a rips_persistence example step by step (without Rips_complex module)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1941 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0e1a13775b50d71474ff7317511a4f7f8ceec05b
2017-01-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1938 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8af39a00b9134dbcc77883412c29d7184479979b
2017-01-06Test of thread_local solutionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/thread_local_no_static@1932 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1f31ab16d2a086d38d0d019bbdc59152f8e02e7
2016-12-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1910 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f6716dcc5c0ad17abe248bdeddb868e04a94fc0
2016-12-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1909 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f4f6704025290938a46455fcc488fcb7642567e
2016-12-16Fix cppcheck warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1906 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: abb0875f5cfe3b3d0ce738257efc3f4c0fb57adc
2016-12-16Fix cpplint and warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1902 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 24c5aacf579eb1ceb35c680770d5168524c4c84b
2016-12-16Fix persistence rips after create_complex voidificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1896 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d4a1258ea01bae048f30621594d0daf280fd8abb
2016-12-15Fix after code reviewvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1889 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ec3dcd290042159c313a83be3a3e8fb7bafa6e8
2016-12-15New pairs in dimension function in Persistence cohomologyvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1887 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 76bc9a951d752a6ca0f62244012965b5b6597a17
2016-12-08replace euclidean_distance with a class Euclidean_distance containing an ↵vrouvrea
operator() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1840 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b1619401ac0ef978257709c5deeb7e19fbcff32c
2016-11-23Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1771 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 994e3bf769d236d230ac2f7e751aa310dabb74bb
2016-11-22Add rips distance matrix example to be more visible in the docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1769 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 921a2702188a587c93600440a7e5cee675a8cd63
2016-11-22Fix examples and testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1767 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4a1c78aec05d443e0525bf24a0cc7f7b5c628629
2016-11-17Modify examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1757 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b6f26947ad16f440ea4d4b7cb5e145a58f28dcb
2016-11-16Merged last trunk modificationsvrouvrea
Make Witness compile and test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1755 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e6eec55ac0a4cc66da3bb081a222cae5b998c1cf
2016-10-20Merge last trunk modificationvrouvrea
Fix doc issue Still doc issue git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1739 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a99345f06e93a3525691699a6fe1505979e8e8e
2016-10-12Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1715 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 68b171b536522a45c4304e40bafe11d08c8921dd
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