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2017-11-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.11.fix@2839 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 22158e5d4aae2b6c0e5502c585cb6c513c08ac63
2017-11-06Add Alpha complex 3d fix for cgal 4.11vrouvrea
Add weighted_periodic_alpha_complex_3d_persistence example git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.11.fix@2837 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 07d016f7879220064b53ccfe19b169f06e79c86f
2017-11-06Rollback commented linesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2831 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 052a8f264877e7ffa87f8c81abf0f0c83cb60d54
2017-10-26Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2811 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a37c02ca51d0df28a981207db6ecc1bd0991ffa
2017-10-10Fix tests and homogenize codevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2775 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bdcc278981e2683a5b49f241f07704f3d5c7ca4e
2017-10-10Fix CGAL 4.11 bug and remove old_interface file. Better done with #ifvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2774 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9a905b04cfa2718f9d5abc80e14ab1ee26d16279
2017-10-02Fix weighted periodic alpa complex 3d example testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2748 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ddf754a1f8046c7b17db89668cf8d4dd95f69dac
2017-10-02remove test_cgalvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2747 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b036eb3ccef79e012eacb045a0dda37db1de994
2017-10-02Fix weighted periodicvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2746 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bf90bfffbc00efe5f391e45ac8ece6ff6e9d57ea
2017-10-02Fix weighted_alpha_complex_3d_persistence to work with CGAL 4.11 (2 cpp and ↵vrouvrea
cmake compiles the correct one) Homogeneize alpha_complex_3d* codes Fix weighted_periodic_alpha_complex_3d_persistence with CGAL doc help Add grid off file with weights to test weighted_periodic_alpha_complex_3d_persistence git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2744 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ecc4f3629e75bd986ffd22ec348f0412163e4dbd
2017-09-29Doc issue fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2733 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ea0323fed1ca42ecee50d6fbf9db9fbfb3e64cc9
2017-09-27Merge last trunk modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_remove_useless_global_filtration@2720 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 37cec1ea1e06c9e9656962614fcddc0fa022c5d0
2017-09-26adding a version of periodic weighted alpha shape (that unfortunatelly do ↵pdlotko
not work yet...) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2718 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 611967b7fc8257fb2ae27ecc42f0e303c183755a
2017-09-26Merge weighted alpha complex fix branchvrouvrea
Add some text to 3d alpha complexes in the usage function git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2716 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6f2ee1897438a6bf75b484c2c625c43f2571ab41
2017-09-25Fix weighted alpha complex 3dvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2709 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3e7d1f73038d193b566e790a3095b6f802c48b48
2017-09-22Remove global filtration attribute of te simplex tree (including getter and ↵vrouvrea
setter) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_remove_useless_global_filtration@2705 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a6c179ae47e61d1ca12d1f54c4ae1fc0e3c1fde2
2017-09-20Merge modifications for simplex_tree automatic dimension setvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2689 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c18c6316d51f476a795b59c8b870db1aaf0b4591
2017-08-17Add file formats for Python.vrouvrea
Binding for persistence write files Launch py.test with the command "python -m pytest" (shall work everywhere) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2611 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9443a7eb5b580ece7708ff57949ad08339c1c5c3
2017-07-04Add Gudhi namespace for reader_utilsvrouvrea
Add confidence band in persistence_graphical_tools.py Persistence_diagram returns a plot that is no more showed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2582 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4125f4f525057e89c8b0d5d164ea0b9d1df1bd72
2017-06-02Get rid of Boost_system library linkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52deba0f2212767b99b801810d356e55417225db
2017-05-30Make install examples mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2467 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 018b6e55c392b37d02503e7822e0a586061c987d
2017-05-09Doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2407 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59aa4cbeef583b93f5e0e4416a4cd2903643d8f0
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-11Fix some #include ""vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2332 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2c15320d156c2b928e9eb664a2afed8fa9809e7e
2017-04-11Move Euclidean_distance in Gudhi namespacevrouvrea
Fix cpplints git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2331 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bc5609c2df490db50e82b56a5e6d899dc6370182
2017-03-24Merge cgal_4.8_issue branch into the trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2242 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 094b70b4141e7456651263b1619240aff6a5d562
2017-03-24Workaround for CGAL version 4.8 compilation issuevrouvrea
New target CGAL_WITH_EIGEN3_VERSION set with CGAL_VERSION when CGAL and Eigen3 found to ease CMakeLists.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2241 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2fbf1f9397aa1549ba05aa26ac6852b882dce147
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2237 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e320827b0f22160d6645f9ac89d7d7790964cf00
2017-03-24cpplint fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2236 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d3680e5085b858b2d5930179ca345f708688cbae
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2232 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ac02d5dd3b2aedd4795f775c228fe5ef7e1b3320
2017-03-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2194 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8fa0a9eeb6b7064cb1d3d3780d5ab58818f49ec
2017-03-16Merge Last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2192 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 737b10fe34bcc842a1e64522f1eb14c16c7cfec0
2017-03-08Add sphere points on the grid example and document itvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2177 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f746ffbf946df64df9221304bbb3eb55e5db6b4f
2017-03-08Weighted alpha complex 3d featurevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2176 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a5bb0995c4aa75783666adc174245d4639057b8a
2017-03-07Add doc for exact alphavrouvrea
CMake for exact alpha Factorization git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2170 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b2ac281dd21313602590fc834e7ad22bbf081021
2017-03-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2169 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f8526767e8002cb106f46b8eeb93442b596786de
2017-03-07Factorization of from functionsvrouvrea
Add exact alpha complex 3d example git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_3d_fix@2168 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1c55851fd2ebcf8ec553854baca803c08b6634c4
2017-03-03Merge last trunk modificatinosvrouvrea
make sphinx depends on cython target git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2155 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ebb1709872963ffd30a6d31ab596f2715ca14436
2017-03-03Add GPL copyrights on images directoriesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2142 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d6bdcfdefb00263199b22fcc39cdb8826f8f3dbe
2017-02-28Move boost flags for MSVC compilation issue (already moved on rev. 2115)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/relaxed-witness@2121 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f2f185fbfbbd56ef9fb5a96b2d75a65db4c850e
2017-01-25Code review fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_doc_fixes@2011 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0f2751802f4a6f4e75dfd3dbea08d57fe081e8f9
2017-01-24Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1989 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0743b9beb802b839357ecce17e11af5d4ef2a163
2017-01-20Fix code reviewvrouvrea
Remove unused include git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1968 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dc983a4be66296869cbeddd66b9d48e25a24b5ef
2017-01-19Only OFF filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1961 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 884285c899de8de4495b8372305052137b8448f6
2017-01-19Strange Floating Point Exception : 8 on MacOSX since global type removalvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1958 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e0afcd91aa3b8e166f2ed439a7542934ffe0b1b5
2017-01-19Fix ccplint issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1956 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 01ffb1d403c65a90d081cf17fe8f595c11a34bab
2017-01-17Add of a rips_persistence example step by step (without Rips_complex module)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1941 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0e1a13775b50d71474ff7317511a4f7f8ceec05b
2017-01-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1938 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8af39a00b9134dbcc77883412c29d7184479979b
2017-01-06Test of thread_local solutionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/thread_local_no_static@1932 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1f31ab16d2a086d38d0d019bbdc59152f8e02e7
2016-12-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1910 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1f6716dcc5c0ad17abe248bdeddb868e04a94fc0
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