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2017-09-20Roll back simplex tree set_filtration modification (assign_filtration ↵vrouvrea
asserts in debug) and modify test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2694 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d08cc4b4f310784975b81d10b7ebd78063c42378
2017-09-20Separate and improve simplex tree iostream operators to test automatic ↵vrouvrea
dimension set on iostream operators git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2693 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dafd077f3ed20eafaccdb27d56e02b3d9e5c44a7
2017-09-20Merge modifications for simplex_tree automatic dimension setvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2689 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c18c6316d51f476a795b59c8b870db1aaf0b4591
2017-09-11Doc review: bad doc review fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2660 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a024a1570e282c5ebd1c675d687372ee3dab0ed0
2017-09-11Doc review: rephrasevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2659 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b8a04218fa043e2bd273f77233d794e2c9522060
2017-09-11Code review: remove reference and explicit type (instead of auto)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2658 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3ba33efc13a3a650f2c2d20bb803aca3b475603a
2017-09-11Code review: constify find_child and for instead of while loopvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2657 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e136c1a8b6d5bbc213383f1e6a2e00a875424ad1
2017-08-30Code review better use a break to end loop when we know it is not needed to ↵vrouvrea
be inserted. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2640 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2f5fe60856598f0b45c86fd91beda407bcf6938d
2017-08-25Code review : dimension_ is now set on the flyvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2634 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 12974878db3242c442c09268437de4d56e704593
2017-08-25Code review : no need to clear intersectionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2633 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9a59d20c5786b012229cc5db45181ba165af8f8a
2017-08-25Code review : find_child implementation improvementvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2632 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c4024b5a56b64dd168a5de1422a857ccebd606fb
2017-08-25Doc review : expansion_with_blockers docvrouvrea
Code review : blocker_expansion_function reamed block_simplex. Add of concept in doc. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2631 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5746beb589e80e329cc7233c5cb54d733256f793
2017-08-25Code review : use boost::adaptors::reverse(intersection) instead of std::reversevrouvrea
Doc review : siblings make no sense to a user git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2630 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0c9f2b3159294687241ad994e0c7fa7098d31285
2017-07-06Doc example additionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2587 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eec20e1b4242460fbe97a9622d69ad35bfdca8b7
2017-07-05Fix default filtration value given by the graph_expansion method with blockervrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2585 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 38586e3c9a622c74c6b6658bdc0a6776c5ea5d5a
2017-06-29First working version of expansion insertion (different from rips expansion).vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2570 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a6bb4052c3111e783e9e138619f1e945c856708
2017-06-26A test of Cech complex with oracle blockervrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2563 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6c4325dd1ca53a92f4f3de3ed32323c8b6505f5d
2017-06-23First version of expansion with blocker oraclevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2562 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 755af58e3688d00b43edd9616fd903cce1eca704
2017-01-06Test of thread_local solutionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/thread_local_no_static@1932 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1f31ab16d2a086d38d0d019bbdc59152f8e02e7
2016-09-12Modify filtered complexes sections and examples.vrouvrea
Modify persistence sections and examples git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1487 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b0bdc7199f7229ac152175c4cbc6ebd79c9bc67
2016-08-25Modify SimpleyKey, SimplexTreeOptions concept and SimplexTree documentation ↵vrouvrea
about Simplex_key type (can be signed or unsigned). git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1454 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 562aadf6d7491ea7f7144a3394dc78bdabc9e9f1
2016-08-05bad tag termination for doxygenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1421 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7665d06c502a1ed93d87d0393e630083e34bc846
2016-08-05Fix the 3 billions of simplices limitvrouvrea
Add some comment and documentation about the new limit (4 billions) Rephrase third party library installation documentation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1420 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95b20677e455b61578da74aabbd3764b4a27816d
2016-04-14Remove debug traces for TBB fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1115 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ec74747e3c30dfccf67e0e39e82aa407f3287d7
2016-04-08Merge of alpha complex feature from trunkvrouvrea
Add Eigen3 in installation Add alpha complex in introduction All examples directory moved to example (was example/common, example/Alpha_complex) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1110 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0b88a4f2b102e2189f4b916b8358ffb2458a72f0
2016-04-08Merge last trunk developmentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1107 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8fcecf0beb0517a1da01c57d2e1c2e32a2aba89
2016-04-07Fix Doxygen warningvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1104 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c5873a4a207f01e20729d3ce964ae67f6cf55331
2016-04-01cpplint/cppcheck fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1091 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1c274cd8c8a3c76fe35f96c7186bcbf3d8bee3e8
2016-03-31Fix TBB issue in CMakevrouvrea
Add TBB in Doxygen git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1086 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e3d3251431193d21ebf9344c230d12df624cd905
2016-03-30Add cubical complex to main pagevrouvrea
Homogeneize the author/copyright sections of modules Exclude data and GudhUI from doxygen git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1085 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b89161f3253553a02935885334b2fc6cf58055e
2016-03-24prune_above_filtration version that is no more using filtration vector.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1073 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95dca83fa459abd902624bf2a5f631925e4cf9b0
2016-03-23An alternative to prune_above_filtration in comment. Fix UT for alternativevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1072 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1958a5ee06c339d8cd8cdaae92358d2fff445a7a
2016-03-23prune_above_filtration returns filtration vector modification information ↵vrouvrea
instead of calling initialize_filtration() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1071 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6fdc1797ac6e7b452abe150643f0ec9578c3bbab
2016-03-22GUDHI_CHECK was not intuitive.vrouvrea
Reverse GUDHI_CHECK calls. No exception when no point is given in contrction. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1070 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bf6a08d48b5b29a5b24bf5107116e399dfc0a6bc
2016-03-21Merge of trunk Witness feature + add witness in package top listvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1064 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5555f6096c5d3786d519679f118467303ac6172
2016-03-21fix #include "gudhi/Simplex_tree.h" in generated docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1062 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f7d2fad28cb01ea0970b63d695f53ec9e65723c3
2016-03-20Quiet a signed/unsigned comparison warning.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1060 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e7640912b59f8bb7357316e4a5cf3d75898dca21
2016-03-17Use post and exception doxygen tag instead of warnings everywhere.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1053 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5e263835e662d66ef068c73d3efe71f72f90de10
2016-03-17Add in a comment an alternative version of prune_above_filtrationvrouvrea
Fix some cpplint/cppcheck defaults git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1051 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9cfd8c7f7f9c82998a4c9d2d00f105ed16690208
2016-03-14Remove Options::store_filtration check is true in prune_above_filtration ↵vrouvrea
function in order to let the user empty the tree To empty the tree, call initialize_filtration() and prune_above_filtration(-1) Add a UT to test this case git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1044 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bb4a916fb547c6312f2138d355903ef87525e9c4
2016-03-14No more use of threshold_ for prune_above_filtration because threshold may ↵vrouvrea
be not up to date git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1043 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b17d8ef63bc173b4c4b6b0bde31f97d85672a754
2016-03-14Use GUDHI_CHECK on null_simplex instead of "if"vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1041 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 783218b56e34ef53fbca5bb52e8a467504c0eddc
2016-03-14Boost flat_map erase on an iterator is most efficientvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1040 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b20d31e129b9aa7f2d884aa935a53959a288650
2016-03-09Add header and footer to generated documentation in order to fit with the ↵vrouvrea
web site. Add a package overview on top page. Remove text that was redundant with the web site. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1035 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95d6c0e2f0ed8389620c27c03e37d441f93787ee
2016-02-03it is a simplex and not a simplex handlevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@999 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4bfc8fe6051480854acbd68fdb5c6f09624aa3da
2016-02-03make_filtration_non_decreasing and rec_make_filtration_non_decreasing must ↵vrouvrea
go through the tree in reverse mode (starting from the right part) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@997 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0c8f8aeabd7dcba26971381c425ef7b0b417138c
2016-02-03Merge of AddressSanitizer bug fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@996 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20e4b949af8e4481c13e8a91181fe772c696f01a
2016-02-02alpha off reader test strategy modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@995 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa4ba97eecefb03e01a53ae1e2b50248a0857043
2016-01-19make_filtration_non_decreasing fixvrouvrea
Ut rewrite git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@974 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3326338b9454923b59d3e42add0f3530c6dbe16f
2016-01-15make_filtration_non_decreasing fix.vrouvrea
Make it non decreasing for border and not only for parent. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@972 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e71f40baa56de53e68b02603b64fb504b1f5d978
generated by cgit v1.2.3 (git 2.39.1) at 2024-07-03 11:36:22 +0000