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2016-09-15Fix cpplint warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1503 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b4e1ec1b6cc95a6a7207e68fb31e064c0e3bd065
2016-09-15Fix cpplint and warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1502 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: afc7d137b66225954ebfe37a823f1f0b6bcfe7a5
2016-09-12Intro_simplex_tree.h for filtered complexes module documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1488 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9dfa3d056b4216efe02c8cb0323bdd8805b2756
2016-09-12Modify filtered complexes sections and examples.vrouvrea
Modify persistence sections and examples git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1487 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b0bdc7199f7229ac152175c4cbc6ebd79c9bc67
2016-08-25Modify SimpleyKey, SimplexTreeOptions concept and SimplexTree documentation ↵vrouvrea
about Simplex_key type (can be signed or unsigned). git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1454 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 562aadf6d7491ea7f7144a3394dc78bdabc9e9f1
2016-08-05bad tag termination for doxygenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1421 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7665d06c502a1ed93d87d0393e630083e34bc846
2016-08-05Fix the 3 billions of simplices limitvrouvrea
Add some comment and documentation about the new limit (4 billions) Rephrase third party library installation documentation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1420 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95b20677e455b61578da74aabbd3764b4a27816d
2016-06-10Rename namespaces according to conventioncjamin
+ Missing Boost_THREAD_LIBRARY + Useless typename + Use TBB_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c02ec481b62ef52b40d849e76e3d333e2ca4e7c
2016-06-10Use TBB_LIBRARIES instead of TBB_RELEASE_LIBRARY + missing boost dependencycjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1269 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d39ecf562678c53f960467e7cb14eeaff4b938c4
2016-06-07Rename projects in CMakeLists.txtcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1257 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a51e43d795b0c246d0949c7566aa57d3e15925c7
2016-04-14Remove debug traces for TBB fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1115 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ec74747e3c30dfccf67e0e39e82aa407f3287d7
2016-04-08Merge of alpha complex feature from trunkvrouvrea
Add Eigen3 in installation Add alpha complex in introduction All examples directory moved to example (was example/common, example/Alpha_complex) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1110 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0b88a4f2b102e2189f4b916b8358ffb2458a72f0
2016-04-08Merge last trunk developmentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1107 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8fcecf0beb0517a1da01c57d2e1c2e32a2aba89
2016-04-07Fix Doxygen warningvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1104 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c5873a4a207f01e20729d3ce964ae67f6cf55331
2016-04-01cpplint/cppcheck fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1091 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1c274cd8c8a3c76fe35f96c7186bcbf3d8bee3e8
2016-03-31Fix TBB issue in CMakevrouvrea
Add TBB in Doxygen git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1086 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e3d3251431193d21ebf9344c230d12df624cd905
2016-03-30Add cubical complex to main pagevrouvrea
Homogeneize the author/copyright sections of modules Exclude data and GudhUI from doxygen git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1085 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b89161f3253553a02935885334b2fc6cf58055e
2016-03-24prune_above_filtration version that is no more using filtration vector.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1073 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95dca83fa459abd902624bf2a5f631925e4cf9b0
2016-03-23An alternative to prune_above_filtration in comment. Fix UT for alternativevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1072 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1958a5ee06c339d8cd8cdaae92358d2fff445a7a
2016-03-23prune_above_filtration returns filtration vector modification information ↵vrouvrea
instead of calling initialize_filtration() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1071 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6fdc1797ac6e7b452abe150643f0ec9578c3bbab
2016-03-22GUDHI_CHECK was not intuitive.vrouvrea
Reverse GUDHI_CHECK calls. No exception when no point is given in contrction. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1070 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bf6a08d48b5b29a5b24bf5107116e399dfc0a6bc
2016-03-21Merge of trunk Witness feature + add witness in package top listvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1064 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5555f6096c5d3786d519679f118467303ac6172
2016-03-21fix #include "gudhi/Simplex_tree.h" in generated docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1062 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f7d2fad28cb01ea0970b63d695f53ec9e65723c3
2016-03-20Quiet a signed/unsigned comparison warning.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1060 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e7640912b59f8bb7357316e4a5cf3d75898dca21
2016-03-17Use post and exception doxygen tag instead of warnings everywhere.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1053 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5e263835e662d66ef068c73d3efe71f72f90de10
2016-03-17Add in a comment an alternative version of prune_above_filtrationvrouvrea
Fix some cpplint/cppcheck defaults git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1051 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9cfd8c7f7f9c82998a4c9d2d00f105ed16690208
2016-03-14Remove Options::store_filtration check is true in prune_above_filtration ↵vrouvrea
function in order to let the user empty the tree To empty the tree, call initialize_filtration() and prune_above_filtration(-1) Add a UT to test this case git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1044 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bb4a916fb547c6312f2138d355903ef87525e9c4
2016-03-14No more use of threshold_ for prune_above_filtration because threshold may ↵vrouvrea
be not up to date git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1043 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b17d8ef63bc173b4c4b6b0bde31f97d85672a754
2016-03-14Use GUDHI_CHECK on null_simplex instead of "if"vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1041 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 783218b56e34ef53fbca5bb52e8a467504c0eddc
2016-03-14Boost flat_map erase on an iterator is most efficientvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1040 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b20d31e129b9aa7f2d884aa935a53959a288650
2016-03-09Add header and footer to generated documentation in order to fit with the ↵vrouvrea
web site. Add a package overview on top page. Remove text that was redundant with the web site. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1035 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95d6c0e2f0ed8389620c27c03e37d441f93787ee
2016-02-19Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1032 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0e5b89e0ea0d69ebfdb74ba3bbf29518f7ce5ce8
2016-02-05Merge of last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1005 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd102773dade2672c47e27892782e7b29330f112
2016-02-04CMake strategy modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1003 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c917934525e020b54b2f4506b5c9d060a28c9d89
2016-02-04requires boost alsovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1001 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aca5ee1d5587d2e613691a539bb166ac592c137c
2016-02-04test with include CGAL_USE_FILE to fix windows issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1000 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 11a5fb78933306cfc83951174b38a03837fef58a
2016-02-03it is a simplex and not a simplex handlevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@999 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4bfc8fe6051480854acbd68fdb5c6f09624aa3da
2016-02-03make_filtration_non_decreasing and rec_make_filtration_non_decreasing must ↵vrouvrea
go through the tree in reverse mode (starting from the right part) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@997 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0c8f8aeabd7dcba26971381c425ef7b0b417138c
2016-02-03Merge of AddressSanitizer bug fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@996 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20e4b949af8e4481c13e8a91181fe772c696f01a
2016-02-02alpha off reader test strategy modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@995 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa4ba97eecefb03e01a53ae1e2b50248a0857043
2016-01-19rollbackvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@978 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6aeb45f999861185cda0d0961f22b4a08b413927
2016-01-19Try different values for xUnitvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@977 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b3e39a4858a4be139236be0a87619164a35ea7c0
2016-01-19make_filtration_non_decreasing fixvrouvrea
Ut rewrite git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@974 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3326338b9454923b59d3e42add0f3530c6dbe16f
2016-01-15make_filtration_non_decreasing fix.vrouvrea
Make it non decreasing for border and not only for parent. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@972 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e71f40baa56de53e68b02603b64fb504b1f5d978
2016-01-14AddressSanitizer bug fixes on Simplex tree copy constructor.vrouvrea
debug_tree function git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_insert_with_subfaces_fix@967 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dd4b15dc8f2a4795d3a0b6fdcf4938aff152906b
2016-01-12Backmerge of last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@959 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a5c6ef0ae2ee1e18fff88b98131ff4d14a252152
2016-01-12Fix alpha complex remarks and bugsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@957 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa837fd1a4373c2322db16353d98767907f34c79
2016-01-08cpplint and cppcheck fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@956 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f54c0a2a375e8818c7162aec05249e446361834b
2016-01-07Backmerge from trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@953 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 06624ae4ed4031c7bae56e0b8fa305a318b934bc
2016-01-07Cppcheck fixes after mergevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@951 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b66d24e46b604e2066c4c2e506b147af4be7e6a
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