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2017-06-02Get rid of Boost_system library linkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52deba0f2212767b99b801810d356e55417225db
2017-05-30Make install examples mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2467 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 018b6e55c392b37d02503e7822e0a586061c987d
2017-05-02typosglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2392 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6f20690dcf711382a244eef6ce6eccab76315710
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-03-24cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2232 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ac02d5dd3b2aedd4795f775c228fe5ef7e1b3320
2017-03-03Add GPL copyrights on images directoriesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/gudhi_doc_2.0.0@2142 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d6bdcfdefb00263199b22fcc39cdb8826f8f3dbe
2017-01-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1938 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8af39a00b9134dbcc77883412c29d7184479979b
2017-01-06Test of thread_local solutionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/thread_local_no_static@1932 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1f31ab16d2a086d38d0d019bbdc59152f8e02e7
2016-12-08Remove inline from read_graph (now inline)vrouvrea
Remove Edge_t template (not needed) Add documentation on template params git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1839 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a011b11cddf1a20e29743e6b170dac054ac79c12
2016-11-23Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1771 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 994e3bf769d236d230ac2f7e751aa310dabb74bb
2016-11-17Modify examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1757 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b6f26947ad16f440ea4d4b7cb5e145a58f28dcb
2016-11-16Merged last trunk modificationsvrouvrea
Make Witness compile and test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1755 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e6eec55ac0a4cc66da3bb081a222cae5b998c1cf
2016-10-11Fix doxygen warningvrouvrea
CMake message fix CMake test tangential examples git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1704 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: efa3c76e767d6ba55367b57c10ab87844c968457
2016-10-06Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1650 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 38704453638793e50aa1432eb4eabd9121cf0a26
2016-10-05Rename cliques_of_graph with filtered_simplicial_complexvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/off_files_only@1637 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ca064800d5bab02c0dea01f1cf5b0b6d08755889
2016-09-30Fix compilation issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1596 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 343308ef914e6a6617890f49a55eb0bb8db15ee9
2016-09-28Add rips complex module and first modification stepvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1577 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc949570c6cffa4756f84a15c41fadc8c45b2af2
2016-09-23Examples shall use only off filesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/off_files_only@1555 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 73833d163f3b76604a5111dc4374b635d60afade
2016-09-15Fix cpplint warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1503 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b4e1ec1b6cc95a6a7207e68fb31e064c0e3bd065
2016-09-15Fix cpplint and warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1502 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: afc7d137b66225954ebfe37a823f1f0b6bcfe7a5
2016-09-12Intro_simplex_tree.h for filtered complexes module documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1488 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9dfa3d056b4216efe02c8cb0323bdd8805b2756
2016-09-12Modify filtered complexes sections and examples.vrouvrea
Modify persistence sections and examples git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1487 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b0bdc7199f7229ac152175c4cbc6ebd79c9bc67
2016-08-25Modify SimpleyKey, SimplexTreeOptions concept and SimplexTree documentation ↵vrouvrea
about Simplex_key type (can be signed or unsigned). git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1454 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 562aadf6d7491ea7f7144a3394dc78bdabc9e9f1
2016-08-05bad tag termination for doxygenvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1421 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7665d06c502a1ed93d87d0393e630083e34bc846
2016-08-05Fix the 3 billions of simplices limitvrouvrea
Add some comment and documentation about the new limit (4 billions) Rephrase third party library installation documentation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/3billions_simplices_fix@1420 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95b20677e455b61578da74aabbd3764b4a27816d
2016-06-10Rename namespaces according to conventioncjamin
+ Missing Boost_THREAD_LIBRARY + Useless typename + Use TBB_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c02ec481b62ef52b40d849e76e3d333e2ca4e7c
2016-06-10Use TBB_LIBRARIES instead of TBB_RELEASE_LIBRARY + missing boost dependencycjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1269 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d39ecf562678c53f960467e7cb14eeaff4b938c4
2016-06-07Rename projects in CMakeLists.txtcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1257 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a51e43d795b0c246d0949c7566aa57d3e15925c7
2016-04-14Remove debug traces for TBB fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1115 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ec74747e3c30dfccf67e0e39e82aa407f3287d7
2016-04-08Merge of alpha complex feature from trunkvrouvrea
Add Eigen3 in installation Add alpha complex in introduction All examples directory moved to example (was example/common, example/Alpha_complex) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1110 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0b88a4f2b102e2189f4b916b8358ffb2458a72f0
2016-04-08Merge last trunk developmentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1107 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8fcecf0beb0517a1da01c57d2e1c2e32a2aba89
2016-04-07Fix Doxygen warningvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1104 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c5873a4a207f01e20729d3ce964ae67f6cf55331
2016-04-01cpplint/cppcheck fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1091 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1c274cd8c8a3c76fe35f96c7186bcbf3d8bee3e8
2016-03-31Fix TBB issue in CMakevrouvrea
Add TBB in Doxygen git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1086 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e3d3251431193d21ebf9344c230d12df624cd905
2016-03-30Add cubical complex to main pagevrouvrea
Homogeneize the author/copyright sections of modules Exclude data and GudhUI from doxygen git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1085 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b89161f3253553a02935885334b2fc6cf58055e
2016-03-24prune_above_filtration version that is no more using filtration vector.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1073 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95dca83fa459abd902624bf2a5f631925e4cf9b0
2016-03-23An alternative to prune_above_filtration in comment. Fix UT for alternativevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1072 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1958a5ee06c339d8cd8cdaae92358d2fff445a7a
2016-03-23prune_above_filtration returns filtration vector modification information ↵vrouvrea
instead of calling initialize_filtration() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1071 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6fdc1797ac6e7b452abe150643f0ec9578c3bbab
2016-03-22GUDHI_CHECK was not intuitive.vrouvrea
Reverse GUDHI_CHECK calls. No exception when no point is given in contrction. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1070 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bf6a08d48b5b29a5b24bf5107116e399dfc0a6bc
2016-03-21Merge of trunk Witness feature + add witness in package top listvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1064 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5555f6096c5d3786d519679f118467303ac6172
2016-03-21fix #include "gudhi/Simplex_tree.h" in generated docvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1062 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f7d2fad28cb01ea0970b63d695f53ec9e65723c3
2016-03-20Quiet a signed/unsigned comparison warning.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1060 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e7640912b59f8bb7357316e4a5cf3d75898dca21
2016-03-17Use post and exception doxygen tag instead of warnings everywhere.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1053 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5e263835e662d66ef068c73d3efe71f72f90de10
2016-03-17Add in a comment an alternative version of prune_above_filtrationvrouvrea
Fix some cpplint/cppcheck defaults git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1051 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9cfd8c7f7f9c82998a4c9d2d00f105ed16690208
2016-03-14Remove Options::store_filtration check is true in prune_above_filtration ↵vrouvrea
function in order to let the user empty the tree To empty the tree, call initialize_filtration() and prune_above_filtration(-1) Add a UT to test this case git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1044 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bb4a916fb547c6312f2138d355903ef87525e9c4
2016-03-14No more use of threshold_ for prune_above_filtration because threshold may ↵vrouvrea
be not up to date git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1043 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b17d8ef63bc173b4c4b6b0bde31f97d85672a754
2016-03-14Use GUDHI_CHECK on null_simplex instead of "if"vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1041 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 783218b56e34ef53fbca5bb52e8a467504c0eddc
2016-03-14Boost flat_map erase on an iterator is most efficientvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1040 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b20d31e129b9aa7f2d884aa935a53959a288650
2016-03-09Add header and footer to generated documentation in order to fit with the ↵vrouvrea
web site. Add a package overview on top page. Remove text that was redundant with the web site. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1035 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95d6c0e2f0ed8389620c27c03e37d441f93787ee
2016-02-19Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1032 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0e5b89e0ea0d69ebfdb74ba3bbf29518f7ce5ce8
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