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2018-08-07Fix issue #13 : [Global - utilities] use exit(-1) instead of std::abort in ↵vrouvrea
utilities git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3749 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3235f72cc618dcb6ab70b1826a4d3ce2608fa168
2018-06-06Merge of branch thread_local_optional_vincent to take into account XCode < ↵vrouvrea
v.8 as thread local is not available git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3554 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9dcf072a4606d1131a925bca4571f0f1b5547d14
2018-06-05Fix warning from branch warning_fix_vincentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3537 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 830cd74dcec65ed8944639732acd9e72d4a19632
2018-05-30Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3495 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4033114216c767ad4028e3f6d4ccb5f5dfb88f78
2018-05-28Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3479 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95377921626dc6294d4560571023692567db49b7
2018-05-23Modify documentation for Simplex_tree make_filtration_non_decreasingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3452 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 304779c7952985d651750aded78cb32c6e583555
2018-05-15CMake minimal version is now 3.1vrouvrea
Compilation flags are now externalized in cmake/modules Add NO_POLICY_SCOPE for GUDHI_third_parties to fix warnings Try to fix CGAL 4.12 that is no more setting CGAL_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3445 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0ac7613f016e28cc634606f76e85ecaf5bacb2d4
2018-04-27Merge Copyright clarificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3402 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c24c2226a76df7a6a95d2531e98850c7c19580e1
2018-04-26Fix Copyrightsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/copyright_clarification_vincent@3400 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff348beedf92656c6913c2a1df983b5804b33988
2018-02-14Fix copyright issues for Simplex treevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cechcomplex_vincent@3248 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d13758f0059174863de260efac88b32aef256753
2018-01-26Move documentation Copyright in footervrouvrea
Removed from each module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3167 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7595f2d18cdc3773bbd96fa9fed414876ff9fdc7
2018-01-22Fix cpplintvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3149 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e1cc797f8c24015168a1f84430666e8a156ababa
2018-01-16Merge of branch misc-glissevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3135 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7b678c4b6accf796920ca9582fa57e13f5f1f8cb
2018-01-08Fix std::max Windows issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3120 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9aad5e17fb5b93b9b9054ce093dd54a56ca4b08a
2018-01-08Add include <iterator> for std::distancevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3119 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 92438c70043c4ee0d200b8906400b059d176196f
2017-12-22Prettify find_simplex().glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3105 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 34ce3d49fb8f9e64df8b492b2e9091e5e0ca6be4
2017-12-22Use contiguous_vertices in find_simplex().glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3104 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b8d7996b0c3a020d1b67003e4250e557c3cebee9
2017-12-22Comment pointing out where we use null_vertex.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3101 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b6fa96bd51ef95767c10310262951339f7971442
2017-12-22Check that user does not try to insert null_vertex in the complex.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3100 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b44cf48f810de029f3bd8c3a18cc8a9959c34bff
2017-12-18Merge of ST-insert branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3082 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: efc5affb65a1c41d7d86247269cb3eef5e3e792c
2017-12-17Fix graph insertion.glisse
It currently ignores edge (i, j) with j<i, but nothing in the concept forbids such an edge. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3080 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 305f58b4995878da23b0fa07dc783c0bdceab6db
2017-12-17Hyperlink to boost concepts.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3079 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ded02fd1e50098d8295c4f6e2b7a9a3adc4018f
2017-12-17Remove unused AdjacencyGraph requirement.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3078 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e7b92734bc7fbcaf070bd2439cb8aa6af3c2c8e1
2017-12-02Copy insert_simplex_and_subfaces from the gforge TODO, updated to set the ↵glisse
dimension. Passes the testsuite. Not benchmarked yet. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST-insert@3017 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a1abbf9d60d14129431f9152a43d2d6d69a647d
2017-12-02Cleanup checks in Simplex_treeglisse
Rewrite GUDHi_CHECK so we don't get nasty surprises with: if(cond) GUDHI_CHECK(...) else ... where the else would have been matched with the if in GUDHI_CHECK. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST-glisse@3010 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1385540710d0079567b7e4566766bd0da53c584
2017-12-02Use contiguous_vertices also for the boundary of segments.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST-glisse@3009 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c341d1b9951a3afbbc5b45f1fe3f7a6e4d7f396e
2017-11-24Merge ST-doc-simplex branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2953 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a2e9879d7374ce337b2be7a445d8f4adce1f332
2017-11-22Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/set_dimension_mechanism_precision@2933 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 35002d0ff4808310af630a0dd7a5697e7c069812
2017-11-22Merge graph_expansion_blocker fix from cech_complex branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2932 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c6397609dbf92cad0fdd6c0fc5365b96657edec9
2017-11-22Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/set_dimension_mechanism_precision@2931 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44ca09283b600e6af453eb3507bb4ec92b31948b
2017-11-20Copy the doc from FilteredComplex::simplex to the Simplex_tree.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST-doc-simplex@2920 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0323c23e4cd46f79439f477475df4273847aafc2
2017-11-20Add upper_bound_dimension and associated documentation for automatic ↵vrouvrea
dimension set. prune_above_filtration cythonization git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/set_dimension_mechanism_precision@2917 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 12af3c5c2d6012c43d80cc95e1ecc8a2c0df340e
2017-11-16Add missing includescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2890 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ddda864abff7b9509984dcbc657225ea1c80b1a
2017-11-06Doc review : dimension() method documentation can not mention ↵vrouvrea
lower_upper_bound_dimension as it is a private method. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2830 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fec09d2a0b0f896c848a13c54d21625d08efc997
2017-11-06doc review : upper_bond_dimension to be replaced with upper_bound_dimensionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2829 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ca70d79176d406f63c3372dd7e062f108365b99f
2017-10-26Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2811 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a37c02ca51d0df28a981207db6ecc1bd0991ffa
2017-10-26Code review: downgrade_dimension renamed lower_upper_bound_dimension and ↵vrouvrea
make it private. Automatically when dimension_to_be_lowered_ is set (on removal) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2810 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c764433bcc5357acc6454683d4f4182c7c960d6d
2017-10-20Use simplices iterator instead of skeleton iteratorvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2798 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 856d2655901b01dd3e75f428f364ab7ac4f07aee
2017-10-20Code review : rename automatic_dimension_set with downgrade_dimensionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2796 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3b094bc579367d40790c3791f2c4a3700a3d93ae
2017-10-20Doc review: remove_maximal_simplex about automatic_dimension_set mechanism ↵vrouvrea
was too strict. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2795 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0226b3ee6a082b109185c9eff8c1601b61d4f667
2017-10-19Code review : remove template specification for std::maxvrouvrea
Fix cython tests accordingly to the other modifications git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2794 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e1009a3304455fa26fbd368c4cce4451bc3d7784
2017-10-05Doc review : automatic_dimension_set return documentation was not clearvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2761 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 04b4dee9d228923f36062001529476251eac4ef0
2017-10-05Doc review : prune_above_filtration about automatic_dimension_set mechanism ↵vrouvrea
was too strict. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2760 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bccef80ba3f70f87dff28cfa3a85c50f072f695e
2017-10-05Merge the branch graph_expansion_with_blocker_oracle for the Simplex_treevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2759 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa4cf79042f8e9b162617a5a571e06a3feb4c191
2017-10-05Doc review : fix find_child explanationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2758 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 30759214110b29a525cbbf2d97ff84b92b4eace2
2017-09-27Replace INFINITY with std::numeric_limits<Filtration_value>::infinity()vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_remove_useless_global_filtration@2719 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b24d3381da60cd634142e3024d5f5ed53294f8e8
2017-09-26Doc review : Simplex tree remove maximal simplex is an implementatino detail ↵vrouvrea
that is not needed by the developper git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2717 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d096485bf30e50c804cf349f040f57764770136f
2017-09-22Remove global filtration attribute of te simplex tree (including getter and ↵vrouvrea
setter) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_remove_useless_global_filtration@2705 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a6c179ae47e61d1ca12d1f54c4ae1fc0e3c1fde2
2017-09-22Remove automatic_dimension_set call from remove and prune functionsvrouvrea
Make it public to be available Modify tests accordingly git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2703 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2ff42d5327ae76b121390a913c4e548d6f59ea99
2017-09-21Remove set_dimension from examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2698 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cde0919e6bb53ad8ace21f1c6894708468449276
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