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2016-03-14Boost flat_map erase on an iterator is most efficientvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1040 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1b20d31e129b9aa7f2d884aa935a53959a288650
2016-02-19Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1032 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0e5b89e0ea0d69ebfdb74ba3bbf29518f7ce5ce8
2016-02-05Merge of last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1005 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd102773dade2672c47e27892782e7b29330f112
2016-02-04CMake strategy modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1003 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c917934525e020b54b2f4506b5c9d060a28c9d89
2016-02-04requires boost alsovrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1001 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aca5ee1d5587d2e613691a539bb166ac592c137c
2016-02-04test with include CGAL_USE_FILE to fix windows issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1000 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 11a5fb78933306cfc83951174b38a03837fef58a
2016-02-03it is a simplex and not a simplex handlevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@999 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4bfc8fe6051480854acbd68fdb5c6f09624aa3da
2016-02-03make_filtration_non_decreasing and rec_make_filtration_non_decreasing must ↵vrouvrea
go through the tree in reverse mode (starting from the right part) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@997 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0c8f8aeabd7dcba26971381c425ef7b0b417138c
2016-02-03Merge of AddressSanitizer bug fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@996 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20e4b949af8e4481c13e8a91181fe772c696f01a
2016-02-02alpha off reader test strategy modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@995 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa4ba97eecefb03e01a53ae1e2b50248a0857043
2016-01-19rollbackvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@978 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6aeb45f999861185cda0d0961f22b4a08b413927
2016-01-19Try different values for xUnitvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@977 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b3e39a4858a4be139236be0a87619164a35ea7c0
2016-01-19make_filtration_non_decreasing fixvrouvrea
Ut rewrite git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@974 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3326338b9454923b59d3e42add0f3530c6dbe16f
2016-01-15make_filtration_non_decreasing fix.vrouvrea
Make it non decreasing for border and not only for parent. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@972 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e71f40baa56de53e68b02603b64fb504b1f5d978
2016-01-14AddressSanitizer bug fixes on Simplex tree copy constructor.vrouvrea
debug_tree function git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_insert_with_subfaces_fix@967 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dd4b15dc8f2a4795d3a0b6fdcf4938aff152906b
2016-01-12Backmerge of last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@959 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a5c6ef0ae2ee1e18fff88b98131ff4d14a252152
2016-01-12Fix alpha complex remarks and bugsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@957 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa837fd1a4373c2322db16353d98767907f34c79
2016-01-08cpplint and cppcheck fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@956 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f54c0a2a375e8818c7162aec05249e446361834b
2016-01-07Backmerge from trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@953 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 06624ae4ed4031c7bae56e0b8fa305a318b934bc
2016-01-07Cppcheck fixes after mergevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@951 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b66d24e46b604e2066c4c2e506b147af4be7e6a
2016-01-07Backmerge of trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@949 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b20b49bab38fdcbc6571c159200125148e9a1bd6
2015-12-11Commit code and doc reviewvrouvrea
Still issue and lot of logs in simplex_tree::prune_above_filtration git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@945 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cd4f60ddcacb0444e0eb3b9323d8042eb49b132e
2015-11-23Backmerge of trunkvrouvrea
Add alpha complex in bibtex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@929 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c8975be439b3e9e91d1fd6ad988db12c75d0395b
2015-11-18rev911 rollbackvrouvrea
code review fix fix prune_above_filtration removing every simplices git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@927 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1660da972bd5198214a0f0384be9be66a5312e74
2015-11-13Utils.h -> Debug_utils.hvrouvrea
More verbose in debug mode (use NDEBUG instead of DEBUG_TRACES) GUDHI_CHECK function to throw in debug or ignore in release mode git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@911 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 250dc0c0f5146f0b9e3fce0e9a8ca0da6af7cf98
2015-11-12code review fixvrouvrea
prune_above_filtration and remove_maximal_simplex in Simplex_tree.h make_filtration_non_decreasing and rec_make_filtration_non_decreasing in Simplex_tree.h git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@910 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a20c9da65a5a3294e42ad2dd45a399d77fb5ad30
2015-11-11Allow st.find({1,2,3}) on good compilers. That includes VS 2015 but not ↵glisse
2013, however I believe it will just ignore the change so it should not hurt. (I'll revert otherwise) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@904 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8f29072c7f5bfa24de5033ada6b377deaf0c8689
2015-11-10Merge from trunk.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@900 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b9e886cd54b1a91c5c794242fe099e57e6d6a19
2015-11-10Use Simplex_tree_options_fast_persistence in one more place.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@899 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b22785182c0140dd36d1a4876c240aa4deabef75
2015-11-09Specific test for non-contiguous vertices.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@898 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5295613117e6a66147dec38327b437bcf5b253c3
2015-11-09Change SimplexTreeUT so it can test several versions of Simplex_tree.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@897 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 55d2cf5d87323a54675fe787df3e76dc31a2d684
2015-11-09New Simplex_tree_options_fast_persistence, while ↵glisse
Simplex_tree_options_full_featured switches to the safe default of allowing non-contiguous vertices. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@896 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 60bc11a90027ed17233903d22a6494198f30eeb1
2015-11-09Backmerge from trunk.vrouvrea
Alpha complex code review. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@894 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 702c4d667de4e7191d1050e6d855d2f79117f954
2015-11-09Modification for Porquerolles Workshopvrouvrea
Bar_code_persistence and alpha_complex_persistence git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@893 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 63d2d21d5ff7c9a94a67eafc326bf8a561bf8166
2015-10-23generate_version excludes bottleneck for version 1.2.0 - to be removed for 1.3.0vrouvrea
generate_version copies concept for doxygen purpose Contact gudhi-users on skbl and contraction page Doxygen warning fixes Doxygen Software section git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@871 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bd7e252c2d0528f4bbc40c33a9221e1d6b386510
2015-10-17Simplify operator== for the boundary iterator.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@862 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 48228705e9f310ed842e214c5d8849e8f1e0c670
2015-10-16Merge from trunk.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@859 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ba38ae19afbfbb095dddd6b7203c8ff18d876c70
2015-10-16Sort in parallel in initialize_filtration using TBB.glisse
No build machinery support for now. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@858 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94071e9da20993dff60743ac75125f26ad62e55e
2015-10-14Update old comment about stable_sort.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@856 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20773a87a3a40113ad8a051be7972289144cd1d7
2015-10-13Backmerge from trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@853 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3f1b56bf4986df7bb2938ea2fff944eb9bf9b653
2015-10-12Workaround for include(${CGAL_USE_FILE}) in GudhUI and hypergeneratorvrouvrea
Fix make test issue when cmake in a build directory for SimplexTreeUT and skbl TestGeometricComplex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@849 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d6b35ba4b697c7ee61fcd39b998a0fd717a3716a
2015-10-08cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@845 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8b15f0805527b494f3a57625de5c69d836b287dd
2015-10-08cpplint fixes on Contraction + warning fixes + Hide Hasse complex for Gudhi ↵vrouvrea
version 1.2.0 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@841 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ed7bf90a9ae0b000b995c6ae4bbdaedbb1a65dd5
2015-10-08Fix contiguous_vertices(). Use it in boundary iterator.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@838 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5b4475f39fe6adf2190223a753625057260e8805
2015-10-06Introduce Options::contiguous_vertices.glisse
For now only used and checked in find_vertex. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/contiguous_vertices@833 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ceee8ba85eb21991a836b8f1d1117bcaafeb8c1b
2015-10-05cpplint fixes - simplex_tree_from_file.cpp renamed ↵vrouvrea
simplex_tree_from_cliques_of_graph.cpp - #include "" vs #include <> for skeleton blockers git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@826 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1bd1ad535e4283bce35eeb31fa8d7896b9de474b
2015-10-05Use boost static_vector instead of std::vector in the boundary iterator of ↵glisse
Simplex_tree. The size can never grow very large (bounded by the dimension, which is bounded by the log of the number of simplices) and this avoids a lot of dynamic memory handling. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@825 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9f6bdc1ed7bae4c44432a05278a719f9aee26b99
2015-10-05cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@822 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1cab7ed83b02fd90ab57550ad5363dc36f8b8d05
2015-10-02Doxygen to be made from user version. Hypergenerator fix. Add definitions ↵vrouvrea
for debug traces. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@821 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5625aaab792264df86d7d442a2e6ff9886cf5d24
2015-10-02Backmerge of trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@820 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 812e0b84d187dd5e30a6a18c12612ebc9bf9206a
generated by cgit v1.2.3 (git 2.39.1) at 2024-07-04 05:35:08 +0000