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2017-08-18Fix sphinx bug when python3 is not in /usr/binvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2613 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 07f67d4cc1f3b558b191115e0979ce3ce0580206
2017-08-17Add file formats for Python.vrouvrea
Binding for persistence write files Launch py.test with the command "python -m pytest" (shall work everywhere) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2611 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9443a7eb5b580ece7708ff57949ad08339c1c5c3
2017-06-14Add traces for debugvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2542 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a9e8098443114a4fe6e9c19e6410169580c134c6
2017-06-13Try to fix Windows compilation for Condavrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2541 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: afa1b10e300aafbc92a85b3519f4b39add2ae6e4
2017-06-09Remove boost date_time dependenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2529 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: daa13fc0046ffdd72577bb1b399fcbdc8ef5033c
2017-06-09Remove boost timer and chrono dependenciesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2528 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5bfb8bd5a6e49dbea9fbfbdc1d748423fc930913
2017-06-09No more need of find_the_lib cmake macro to find Windows boost lib namevrouvrea
Fix cmake warning on if with quotes git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2527 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a352820ab0a596961b9851d4a30c40196a70ff98
2017-06-09Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2526 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 307d82b1c9be8629bdcb89d88e4e6d9deb1ade29
2017-06-09Add BOOST_SYSTEM_NO_DEPRECATED definitionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2524 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4718264666a9289a46f282cfcf3200481966c0db
2017-06-08Add modules as CMake options in order to be able to activate/desactivate ↵vrouvrea
compilation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2515 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 53d5e669ad310c9d8d17c7f95f1e07c3bf658d77
2017-06-02Try to remove boost systemvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2504 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd12c45af5ebeb72c4b49142abab91b46ce1a9da
2017-05-19Move src/common/utilities/hypergenerator.cpp in src/common/utilitiesvrouvrea
Management of Python distribution packages make install is now installing utilities and GUDHI python module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2453 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a85576c7ae062718900f0db2bfb0dd3f26e87177
2017-05-18Modify the way cmake handles utilities, examples, test and benchmarks with ↵vrouvrea
new options to activate/desactivate them. Move hypergenerator as a common utility. Move random point generation from hypergenerator in src/common/include/gudhi/random_point_generators.h git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2442 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e2d13e4b0c09455fb604b684f6d71530352271eb
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-18Rename CMake testsvrouvrea
Add specific GUDHI test coverage function Rename cmake/modules/GUDHI_*.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2362 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 071b1eda7d11b1781a9601a013b88a0b2a9b7bf7
2017-04-14Remove scripts/generate_version.sh, use make user_versionvrouvrea
Remove GUDHIVersion.cmake.in (was for scripts/generate_version.sh) and CMakeLists.txt mechanism Modify src/Bitmap_cubical_complex/example/CMakeLists.txt to generate files in build directory git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2358 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32c73be6aa9a0a6fcfde09ebf21ff38d48abf5e0
2017-04-14Try of a fix for Windows cython find mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2347 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4c93e7042d79bfea7c758e726f6393b97334c798
2017-03-30Move example tests in a new CMakeLists.txtvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2288 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8b2bce4c8be8a34b8fba9c664d2f0b3b60a50c20
2017-03-28Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2263 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b430e79ecc94bee975d748eb3e2106c7dbab3ce
2017-03-24Workaround for CGAL version 4.8 compilation issuevrouvrea
New target CGAL_WITH_EIGEN3_VERSION set with CGAL_VERSION when CGAL and Eigen3 found to ease CMakeLists.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2241 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2fbf1f9397aa1549ba05aa26ac6852b882dce147
2017-03-24Factorize third party management and extract them from CMakeLists.txtvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2239 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ed246b649418a623919b8b337ce366f5cc1d27f
2017-03-03Merge last trunk modificatinosvrouvrea
make sphinx depends on cython target git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@2155 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ebb1709872963ffd30a6d31ab596f2715ca14436
2017-03-02Move variable definition in if statementvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2136 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cb72284bc8962d4d5ec89c8a6d7f10ec559a4d52
2017-03-02Add gudhi patches to user_versionvrouvrea
CMake code factorisation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2133 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: eaf54902bad1a9e2609828f4325b6c465181f553
2017-03-01Remove Debian directory.glisse
It will be handled separately in Debian. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2124 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e1b94bc17059f1bbaa88c1117e044d205efb5582
2017-01-24Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1989 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0743b9beb802b839357ecce17e11af5d4ef2a163
2017-01-20Merge last trunk modifications in qt5 branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/qt5@1976 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7f8c5b9443bf0996347fe459fe21c42a2fed0cca
2017-01-16Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1938 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8af39a00b9134dbcc77883412c29d7184479979b
2017-01-07Fix user version for gudhi patchesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1936 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 462555b65b7b3c724a08d11e9b5a2776bf3a1bd8
2017-01-07Fix user version for patchesvrouvrea
Bad include type in CGAL/Orthogonal_incremental_neighbor_search.h git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1935 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1fc3888dd7af8624d3b501b32b76194215e0b7cf
2016-12-15Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1888 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 951a081ac634f829fa49265005ea1e620f2c08ca
2016-12-12Merge from trunk.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/qt5@1848 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c8e1376894207c8c08896f750f71c115e07f6d95
2016-11-16Merged last trunk modificationsvrouvrea
Make Witness compile and test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1755 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e6eec55ac0a4cc66da3bb081a222cae5b998c1cf
2016-10-20Merge last trunk modificationvrouvrea
Fix doc issue Still doc issue git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1739 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a99345f06e93a3525691699a6fe1505979e8e8e
2016-10-11Problem of merge with tangentialcomplex branch.vrouvrea
Redo in an integration branch git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tangential_integration@1701 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa029e8e90b3e203ea675f02098ec6fe95596f9f
2016-10-06Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1653 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3f11061ff76ea31b08bf6560a19e94fb3546f0f8
2016-10-06Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1650 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 38704453638793e50aa1432eb4eabd9121cf0a26
2016-09-30New name for qglviewer on Debian.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1594 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: adcfb859f07edcc68442bda54a8b26997ba1498c
2016-09-29Fix doxygenvrouvrea
Add tests git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1589 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3b03e969f43f4f41c7bca1b2de96a71688475742
2016-09-27Fix naming conventions and cpplintvrouvrea
Add Bottleneck_distance to GUDHI_MODULES in GUDHI_user_version_target.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/bottleneck_integration@1569 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b96a2be25477ddf227e43d9941989f93a0f626bb
2016-09-21Add packages in GUDHI_MODULEScjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/subsampling_and_spatialsearching@1522 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa1d4b4f1e0f6c437817e7bf6453d9fb1ca09df6
2016-09-08Add doxygen target for user and developper version.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1481 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b76661a6d3e91508ffa21f1e183a5e822f6a92bf
2016-09-08Make directory fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1480 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a8515623b6556f183d849ea1ec6e667d23afeff2
2016-09-07Add GUDHI user_version target to replace generate_version.shvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/make_user_version@1479 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b41a86ec3bed234b8fa1988b48de058ab501c392
2016-07-01Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1375 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e09c451302009b8a4f8882bb286829b485c605ab
2016-06-28Modify FindGMPXX.cmake to set directoryvrouvrea
Cython CmakeLists.txt for compilation and tests (still export PYTHONPATH to be solved) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1349 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cc46d7ef7c34ce2bc0408eb612e5ab9241b4c9c0
2016-06-16Fix find TBB package for msvc 2015vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb_msvc2015@1301 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a76105ff52729d8170eb88f5a5cbbce06b65b0ad
2016-04-16Less CRLF line endings.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1135 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 83328005a983668b00961f069672e97493e42a34
2016-01-07TBB find package mechanism with definition for code purpose.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@952 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b4dcb962d1af208feccf831171029479d37831e
2015-12-10Forgot UseTBB.cmakecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@940 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bf6c4d9a54798895a34b89d655f7817534feb8b5
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