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2016-11-18Add distance matrix read from csv filesvrouvrea
Distance template instead of Point_d for distance matrices git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/distance_matrix_in_rips_module@1762 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 695bead714228c57e1be1650048125aa0b841683
2016-11-17Modify examplesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1757 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4b6f26947ad16f440ea4d4b7cb5e145a58f28dcb
2016-11-16Merged last trunk modificationsvrouvrea
Make Witness compile and test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1755 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e6eec55ac0a4cc66da3bb081a222cae5b998c1cf
2016-10-11Problem of merge with tangentialcomplex branch.vrouvrea
Redo in an integration branch git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tangential_integration@1701 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa029e8e90b3e203ea675f02098ec6fe95596f9f
2016-10-03Fix euclidean distance for ripsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1610 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a07dfd4ffe3f17bf242ffb5b57058e99171a8016
2016-09-30Fix compilation issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1596 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 343308ef914e6a6617890f49a55eb0bb8db15ee9
2016-09-28Add rips complex module and first modification stepvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1577 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc949570c6cffa4756f84a15c41fadc8c45b2af2
2016-09-23Fix doxygen warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1550 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 39ef2513b5d84cb392677ba10718f5e47734884c
2016-09-19Merge of warning_fix branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1512 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8fd75ab3cb6a02013df18f6d5048755d39524b70
2016-09-19Rename off file reader as stands in convention.vrouvrea
Add an example with a vector of double for point type. Fix SO3 OFF files accordingly to OFF file standard. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1510 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff61bed1f1895bc5bf1af4ae946e2a84a692c390
2016-09-16No more need of Test.hvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1508 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a0436136ab366116b61d0630a3da2b6407291db9
2016-04-15Doc bug fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1122 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc0c6e2065540b300e012a4e39b33b5eda4e5318
2016-04-15Doc bug fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1121 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 48bb0bb605dfdb9c20bcf5d8de049aef6caf15a5
2016-04-15Merge of periodic_alpha_complex_3d_persistence featurevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1119 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a77050d737aa008a1bd0c71a4e4c8eb21c7fef6
2016-04-14Add of src/common/include/gudhi/Points_3D_off_io.h to read specific 3D OFF ↵vrouvrea
Files for CGAL Point_3 Add an example to read 3D OFF Files for CGAL Point_3 Modify alpha_complex_3d_persistence.cpp to read OFF files Add periodic_alpha_complex_3d_persistence.cpp in Persistent_cohomology examples Add info about new examples in README git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/periodic_alpha_complex_3d@1116 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6b423b598869a0f4f9c62d93c93b69efd93c0161
2016-04-08Merge of alpha complex feature from trunkvrouvrea
Add Eigen3 in installation Add alpha complex in introduction All examples directory moved to example (was example/common, example/Alpha_complex) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1110 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0b88a4f2b102e2189f4b916b8358ffb2458a72f0
2016-04-07get_point_cloud can be constvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1105 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c9b905e8f01c671964b4151883a6385e47adaa06
2016-04-06Marc review fixvrouvrea
cpplint/cppcheck fix git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1102 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f47277da05debb56dd9a4a96bf89ec7b3ffa2e27
2016-04-06Replace Delaunay_triangulation_off_io.h and ↵vrouvrea
Delaunay_triangulation_off_rw.cpp with Points_off_io.h and CGAL_points_off_reader.cpp Adapt UT and examples for this Adapt Alpha complex for it Alpha complex is now inserting points in a faster way (after a spatial_sort). Remove Alpha complex construction from a pointer on Delaunay triangulation (no more needed). Adapt documentation to all these modifications Forbid copy/move constructor/assignment operator on Alpha complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1098 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 08a673b66451b5cb03fbdf482d696d93b35d220f
2016-04-06Last modifvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1097 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d02c8b6bf27616ef515464a35e48b7871a69f9a8
2016-04-01cpplint/cppcheck fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1091 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1c274cd8c8a3c76fe35f96c7186bcbf3d8bee3e8
2016-03-22GUDHI_CHECK was not intuitive.vrouvrea
Reverse GUDHI_CHECK calls. No exception when no point is given in contrction. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1070 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bf6a08d48b5b29a5b24bf5107116e399dfc0a6bc
2016-03-17Use post and exception doxygen tag instead of warnings everywhere.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1053 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5e263835e662d66ef068c73d3efe71f72f90de10
2016-03-16CppCheck and CppLint fixes for alpha complexesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1047 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a9b42ad2f8751384b5227fa3da8f380cda9b3696
2016-03-15In Delaunay_triangulation_off_io.h, constructing the Triangulation from a ↵vrouvrea
vector of Points is a more efficient way (instead of inserting points on the fly). As consequence, the documentation needs to be rewritten as the points index are changed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1046 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bdb0196b61418a983cfaf7f6781a3a2906e8b136
2016-01-12Backmerge of last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@959 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a5c6ef0ae2ee1e18fff88b98131ff4d14a252152
2016-01-12Fix alpha complex remarks and bugsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@957 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa837fd1a4373c2322db16353d98767907f34c79
2016-01-08cpplint and cppcheck fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@956 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f54c0a2a375e8818c7162aec05249e446361834b
2015-12-11Commit code and doc reviewvrouvrea
Still issue and lot of logs in simplex_tree::prune_above_filtration git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@945 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cd4f60ddcacb0444e0eb3b9323d8042eb49b132e
2015-11-23Backmerge of trunkvrouvrea
Add alpha complex in bibtex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@929 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c8975be439b3e9e91d1fd6ad988db12c75d0395b
2015-11-18rev911 rollbackvrouvrea
code review fix fix prune_above_filtration removing every simplices git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@927 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1660da972bd5198214a0f0384be9be66a5312e74
2015-11-13Utils.h -> Debug_utils.hvrouvrea
More verbose in debug mode (use NDEBUG instead of DEBUG_TRACES) GUDHI_CHECK function to throw in debug or ignore in release mode git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@911 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 250dc0c0f5146f0b9e3fce0e9a8ca0da6af7cf98
2015-11-12code review fixvrouvrea
prune_above_filtration and remove_maximal_simplex in Simplex_tree.h make_filtration_non_decreasing and rec_make_filtration_non_decreasing in Simplex_tree.h git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@910 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a20c9da65a5a3294e42ad2dd45a399d77fb5ad30
2015-11-09Modification for Porquerolles Workshopvrouvrea
Bar_code_persistence and alpha_complex_persistence git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@893 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 63d2d21d5ff7c9a94a67eafc326bf8a561bf8166
2015-10-18Also use TBB to build Hasse_complex in parallel.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/tbb@870 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6633f9b8261cfb2acfb62d1f4748df73375086bd
2015-10-13Backmerge from trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@853 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3f1b56bf4986df7bb2938ea2fff944eb9bf9b653
2015-10-08cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@845 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8b15f0805527b494f3a57625de5c69d836b287dd
2015-10-08cpplint fixes on Contraction + warning fixes + Hide Hasse complex for Gudhi ↵vrouvrea
version 1.2.0 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@841 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ed7bf90a9ae0b000b995c6ae4bbdaedbb1a65dd5
2015-10-05cpplint fixes - simplex_tree_from_file.cpp renamed ↵vrouvrea
simplex_tree_from_cliques_of_graph.cpp - #include "" vs #include <> for skeleton blockers git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@826 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1bd1ad535e4283bce35eeb31fa8d7896b9de474b
2015-10-05cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@824 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f34c7f0d3632534f272be5c941d71cdc1556e4a9
2015-10-05cpplint fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@823 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fac8cffb3f24a993f4bd6f4429b36c5770bb5560
2015-10-05cpplint fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@822 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1cab7ed83b02fd90ab57550ad5363dc36f8b8d05
2015-10-02Backmerge of trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@820 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 812e0b84d187dd5e30a6a18c12612ebc9bf9206a
2015-10-02Review fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@816 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d112bf6b1b07a75947392576baa53321326e65c4
2015-09-26Replace boost::object_pool by a simpler, more scalable version.glisse
Not ready for trunk, it causes a memory leak, visible for instance with valgrind on PersistentCohomologyMultiFieldUT. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/pool@797 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 20a8296db22f253d49c10edd565557123fdc7c6f
2015-06-18Moved alphashapedoc.off in data/pointsvrouvrea
Moved Delaunay triangulation OFF files read and write in src/common Delaunay triangulation OFF files read and write documentation, examples and tests git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@623 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e03902736a79436e97dbf77a88504f3faa8bd9c6
2015-06-12delaunay off reader/writer fix.vrouvrea
alpha complex algo seems ok. tests are Nok. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@611 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 37cea3b33d783a77a23fa3a54a1bee106508d981
2015-02-23skbl renaming, new link methods for abstract link of geometrical complexsalinasd
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@468 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cb85e1ae86635857fbaaa0781526cb3eeaa9a50a
2015-01-30skbl constructor from list a simplices more efficientsalinasd
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@449 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 86c4a4e285e8776a993b6202a8e411bdc559fd6e
2015-01-30skbl constructor from list a simplices more efficientsalinasd
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@448 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3e3b30cd496da0a96df0379b11acf554aad6b5ae
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